mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,292,848 | 0 | A | T | 74.7% | 364.5 / 261.3 | 464 | noncoding (11/132 nt) | CXP41_RS06830 | RtT sRNA |
| * | NZ_CP025268 | 1,293,000 | 0 | A | G | 64.2% | 283.6 / inf | 344 | noncoding (37/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 1,292,810 | 0 | G | A | 63.6% | 203.6 / inf | 593 | noncoding (49/132 nt) | CXP41_RS06830 | RtT sRNA |
| * | NZ_CP025268 | 1,292,991 | 0 | C | T | 61.3% | 270.1 / inf | 344 | noncoding (46/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 1,292,982 | 0 | A | G | 49.1% | 34.4 / inf | 309 | noncoding (55/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 2,474,461 | 0 | C | A | 31.0% | 86.7 / 12.6 | 73 | Q433K (CAA→AAA) | CXP41_RS13000 | hypothetical protein |
| * | NZ_CP025268 | 2,233,239 | 0 | T | A | 30.5% | 321.8 / 69.0 | 202 | intergenic (+139/+234) | yohP/dusC | small membrane protein YohP/tRNA dihydrouridine(16) synthase DusC |
| * | NZ_CP025268 | 164,412 | 0 | A | C | 25.4% | 260.6 / 22.8 | 197 | intergenic (+47/‑149) | hrpB/mrcB | ATP‑dependent helicase HrpB/bifunctional glycosyl transferase/transpeptidase |
| * | NZ_CP025268 | 2,181,292 | 0 | G | T | 23.3% | 325.1 / 55.4 | 236 | intergenic (‑51/+257) | gatY/fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| * | NZ_CP025268 | 2,233,225 | 0 | T | A | 23.0% | 349.2 / 43.6 | 197 | intergenic (+125/+248) | yohP/dusC | small membrane protein YohP/tRNA dihydrouridine(16) synthase DusC |
| * | NZ_CP025268 | 2,233,248 | 0 | G | C | 22.5% | 445.2 / 81.2 | 215 | intergenic (+148/+225) | yohP/dusC | small membrane protein YohP/tRNA dihydrouridine(16) synthase DusC |
| * | NZ_CP025268 | 623,647 | 0 | A | T | 21.0% | 792.0 / 62.6 | 395 | intergenic (‑88/‑287) | fepB/entC | Fe2+‑enterobactin ABC transporter substrate‑binding protein/isochorismate synthase EntC |
| * | NZ_CP025268 | 4,414,705 | 0 | T | G | 20.9% | 976.4 / 72.9 | 460 | V131V (GTT→GTG) | yjfM | DUF1190 domain‑containing protein |
| * | NZ_CP025268 | 164,444 | 0 | T | A | 20.1% | 345.5 / 17.9 | 149 | intergenic (+79/‑117) | hrpB/mrcB | ATP‑dependent helicase HrpB/bifunctional glycosyl transferase/transpeptidase |
| Marginal new junction evidence (lowest skew 10 of 610 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | 1214891 = | 693 (1.020) | 168 (0.280) | 68/242 | 3.1 | 23.8% | coding (290/630 nt) | CXP41_RS06370 | protein StfP |
| ? | NZ_CP025268 | 1216719 = | 461 (0.770) | coding (40/540 nt) | CXP41_RS06385 | phage tail protein | |||||
| * | ? | NZ_CP025268 | = 1214906 | 688 (1.020) | 142 (0.240) | 60/242 | 3.9 | 21.1% | coding (305/630 nt) | CXP41_RS06370 | protein StfP |
| ? | NZ_CP025268 | = 1216702 | 454 (0.760) | coding (57/540 nt) | CXP41_RS06385 | phage tail protein | |||||
| * | ? | NZ_CP025268 | 695911 = | 0 (0.000) | 306 (0.500) +GAAGAAACAATC |
47/250 | 5.9 | 54.5% | intergenic (‑33/+2) | CXP41_RS03680/CXP41_RS03685 | tRNA‑Gln/tRNA‑Gln |
| ? | NZ_CP025268 | = 696182 | 560 (0.830) | intergenic (‑1/+379) | CXP41_RS03695/asnB | tRNA‑Met/asparagine synthase B | |||||
| * | ? | NZ_CP025268 | 373973 = | 651 (0.960) | 179 (0.260) | 47/274 | 6.7 | 22.2% | intergenic (+41/‑537) | dmpG/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter |
| ? | NZ_CP025268 | = 374376 | 605 (0.890) | intergenic (+444/‑134) | dmpG/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter | |||||
| * | ? | NZ_CP025268 | 780418 = | 440 (0.650) | 141 (0.210) +GG |
36/270 | 8.5 | 23.9% | noncoding (1/76 nt) | CXP41_RS04110 | tRNA‑Lys |
| ? | NZ_CP025268 | = 2525041 | 469 (0.690) | noncoding (76/76 nt) | CXP41_RS13255 | tRNA‑Val | |||||
| * | ? | NZ_CP025268 | = 780371 | 483 (0.710) | 32 (0.070) | 21/196 | 9.3 | 10.1% | intergenic (+100/‑47) | CXP41_RS04105/CXP41_RS04110 | tRNA‑Lys/tRNA‑Lys |
| ? | NZ_CP025268 | 780860 = | 222 (0.460) | intergenic (+3/‑274) | CXP41_RS04120/nadA | RtT sRNA/quinolinate synthase NadA | |||||
| * | ? | NZ_CP025268 | = 684590 | 744 (1.100) | 41 (0.070) | 27/250 | 9.9 | 5.7% | coding (388/675 nt) | gltK | glutamate/aspartate ABC transporter permease GltK |
| ? | NZ_CP025268 | 685289 = | 670 (1.090) | coding (429/741 nt) | gltJ | glutamate/aspartate ABC transporter permease GltJ | |||||
| * | ? | NZ_CP025268 | = 3482513 | 457 (0.680) | 28 (0.050) | 20/212 | 10.4 | 7.2% | coding (539/1914 nt) | yheS | ABC transporter ATP‑binding protein |
| ? | NZ_CP025268 | 3483357 = | 365 (0.700) | coding (1383/1914 nt) | yheS | ABC transporter ATP‑binding protein | |||||
| * | ? | NZ_CP025268 | 780418 = | 440 (0.650) | 129 (0.190) +G |
28/272 | 10.4 | 22.4% | noncoding (1/76 nt) | CXP41_RS04110 | tRNA‑Lys |
| ? | NZ_CP025268 | = 2525162 | 461 (0.680) | intergenic (+1/‑46) | CXP41_RS13260/CXP41_RS13265 | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NZ_CP025268 | = 780271 | 543 (0.800) | 39 (0.070) | 23/238 | 10.5 | 9.4% | noncoding (76/76 nt) | CXP41_RS04105 | tRNA‑Lys |
| ? | NZ_CP025268 | 780858 = | 280 (0.480) | intergenic (+1/‑276) | CXP41_RS04120/nadA | RtT sRNA/quinolinate synthase NadA | |||||