mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 38 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM406671 | = 1321046 | 843 (0.700) | 68 (0.070) | 61/248 | 13.6 | 8.9% | intergenic (‑192/+485) | xpt/llmg_1347 | xanthine phosphoribosyltransferase/hypothetical protein |
| ? | AM406671 | 1380521 = | 690 (0.680) | intergenic (‑458/+78) | llmg_1411/guaC | hypothetical protein/GMP reductase | |||||
| * | ? | AM406671 | = 2143826 | 1096 (0.950) | 197 (0.170) +TTTTTTTTT |
62/266 | 14.2 | 15.5% | pseudogene (144/675 nt) | tnp1077 | pseudogene |
| ? | AM406671 | 2143827 = | 1140 (0.940) | pseudogene (143/675 nt) | tnp1077 | pseudogene | |||||
| * | ? | AM406671 | 1333548 = | NA (NA) | 144 (0.130) | 61/270 | 14.5 | 15.8% | intergenic (‑831/+481) | llmg_1358/llmg_1359 | conserved hypothetical protein/conserved hypothetical protein |
| ? | AM406671 | = 1380520 | 841 (0.700) | intergenic (‑457/+79) | llmg_1411/guaC | hypothetical protein/GMP reductase | |||||
| * | ? | AM406671 | 778852 = | 1170 (0.970) | 30 (0.030) | 26/270 | 21.8 | 2.9% | intergenic (+11/+180) | rbsB/ps301 | ribose ABC transporter substrate binding protein RbsB/putative integrase |
| ? | AM406671 | = 820924 | 940 (0.850) | intergenic (+251/‑254) | ps358/llmg_0854 | conserved hypothetical protein/hypothetical protein predicted by Glimmer/Critica | |||||
| * | ? | AM406671 | 778852 = | 1170 (0.970) | 130 (0.190) +62 bp |
11/172 | 22.8 | 15.7% | intergenic (+11/+180) | rbsB/ps301 | ribose ABC transporter substrate binding protein RbsB/putative integrase |
| ? | AM406671 | 2063454 = | 1243 (1.030) | intergenic (‑244/+964) | sunL/ps461 | Ribosomal RNA small subunit methyltransferase B/bacteriophage lysin | |||||
| * | ? | AM406671 | 1336332 = | 581 (0.480) | 155 (0.130) | 17/288 | 25.4 | 21.4% | intergenic (‑167/+816) | llmg_1362/llmg_1364 | hypothetical protein/hypothetical protein |
| ? | AM406671 | = 1336703 | 573 (0.490) | intergenic (‑538/+445) | llmg_1362/llmg_1364 | hypothetical protein/hypothetical protein | |||||
| * | ? | AM406671 | = 374043 | 1369 (1.130) | 14 (0.010) | 14/272 | 26.0 | 1.2% | coding (139/660 nt) | llmg_0382 | putative GTP pyrophosphokinase |
| ? | AM406671 | 374438 = | 1145 (1.030) | coding (534/660 nt) | llmg_0382 | putative GTP pyrophosphokinase | |||||
| * | ? | AM406671 | = 2143835 | 1144 (1.000) | 3523 (3.110) +ACTTTTCCA |
13/262 | 26.1 | 75.6% | pseudogene (135/675 nt) | tnp1077 | pseudogene |
| ? | AM406671 | 2143836 = | 1207 (1.000) | pseudogene (134/675 nt) | tnp1077 | pseudogene | |||||
| * | ? | AM406671 | 1336332 = | 581 (0.480) | 246 (0.220) +TGGGGTCA |
14/280 | 26.3 | 30.5% | intergenic (‑167/+816) | llmg_1362/llmg_1364 | hypothetical protein/hypothetical protein |
| ? | AM406671 | = 1336707 | 605 (0.500) | intergenic (‑542/+441) | llmg_1362/llmg_1364 | hypothetical protein/hypothetical protein | |||||
| * | ? | AM406671 | = 2220751 | 1285 (1.070) | 15 (0.010) +AAGAAAAA |
12/278 | 27.1 | 1.2% | intergenic (+105/‑796) | ps507/ps506 | hypothetical protein predicted by Glimmer/Critica/hypothetical protein predicted by Glimmer/Critica |
| ? | AM406671 | 2220770 = | 1282 (1.060) | intergenic (+124/‑777) | ps507/ps506 | hypothetical protein predicted by Glimmer/Critica/hypothetical protein predicted by Glimmer/Critica | |||||