mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 30,364 | G→C | A6P (GCC→CCC) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| MC JC | 474,383 | Δ9 bp | coding (915‑923/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| RA | 1,305,536 | G→T | A235E (GCG→GAG) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,446,999 | C→T | intergenic (‑68/‑268) | mntH ← / → nupC | manganese transport protein MntH/nucleoside (except guanosine) transporter |
| JC JC | 2,448,493 | IS186 (–) +6 bp | intergenic (+24/+21) | nupC → / ← yfeA | nucleoside (except guanosine) transporter/predicted diguanylate cyclase |
| RA | 3,252,023 | A→T | D246E (GAT→GAA) | nusA ← | transcription elongation factor NusA |
| RA | 3,465,213 | A→C | L19R (CTG→CGG) | ompR ← | osmolarity response regulator |
| RA | 3,498,010 | G→A | S9L (TCG→TTG) | glgP ← | glycogen phosphorylase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 4,162,513 | C→T | T553I (ACT→ATT) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 4,184,059 | G→T | A385A (GCG→GCT) | zraR → | fused DNA‑binding response regulator in two‑component regulatory system with ZraS: response regulator/sigma54 interaction protein |
| RA | 4,194,135 | G→T | S137S (TCG→TCT) | metA → | homoserine O‑succinyltransferase |
| RA | 4,194,420 | G→T | V232V (GTG→GTT) | metA → | homoserine O‑succinyltransferase |
| RA | 4,194,694 | Δ1 bp | intergenic (+40/‑229) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase |
| RA | 4,421,946 | T→A | D66E (GAT→GAA) | cysQ → | PAPS (adenosine 3'‑phosphate 5'‑phosphosulfate) 3'(2'),5'‑bisphosphate nucleotidase |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |