mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 35,427 | 0 | T | G | 64.7% | 3.7 / 16.8 | 17 | G180G (GGT→GGG) | carB | carbamoyl‑phosphate synthase large subunit |
| * | REL606 | 3,401,024 | 0 | T | . | 43.9% | 183.9 / 156.6 | 82 | coding (396/2115 nt) | fusA | elongation factor EF‑2 |
| * | REL606 | 4,254,741 | 0 | T | G | 43.6% | 7.1 / 255.8 | 134 | pseudogene (338/936 nt) | yjcC | hypothetical protein; b4061_1 |
| * | REL606 | 4,393,061 | 0 | T | G | 40.0% | 111.8 / 33.2 | 70 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 2,296,329 | 0 | A | C | 37.2% | 71.8 / 24.9 | 43 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 3,492,082 | 0 | T | G | 35.0% | 107.3 / 20.6 | 60 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,747,903 | 0 | G | T | 33.3% | 155.8 / 79.6 | 84 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 3,733,719 | 0 | C | G | 31.2% | 61.8 / 13.0 | 32 | G63G (GGC→GGG) | gumD | ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding |
| * | REL606 | 3,235,452 | 0 | T | G | 30.6% | 46.7 / 21.0 | 37 | F85V (TTT→GTT) | yhbQ | hypothetical protein |
| * | REL606 | 254,101 | 0 | T | G | 28.6% | 21.7 / 11.1 | 21 | pseudogene (530/1710 nt) | fhiA | b0229; flagellar system protein |
| * | REL606 | 4,195,874 | 0 | A | C | 28.4% | 153.8 / 12.5 | 67 | T318P (ACC→CCC) | aceB | malate synthase |
| Marginal new junction evidence (lowest skew 10 of 59 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2037295 | 40 (0.730) | 8 (0.160) | 7/134 | 4.9 | 19.1% | coding (836/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | = 2037489 | 32 (0.660) | coding (642/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| * | ? | REL606 | 2041277 = | 34 (0.620) | 7 (0.140) | 7/136 | 5.0 | 13.9% | coding (107/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041470 = | 56 (1.130) | coding (1351/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | = 2036917 | 56 (1.030) | 9 (0.180) | 7/140 | 5.1 | 18.3% | coding (42/1113 nt) | wbbC | putative glycosyltransferase WbbC |
| ? | REL606 | = 2037192 | 28 (0.550) | coding (939/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| * | ? | REL606 | 2041220 = | 38 (0.700) | 7 (0.140) | 7/142 | 5.2 | 12.8% | coding (164/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041465 = | 59 (1.140) | coding (1356/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2039283 = | 29 (0.530) | 10 (0.190) | 7/142 | 5.2 | 23.1% | coding (412/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | 2039547 = | 39 (0.760) | coding (148/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | = 2038833 | 30 (0.550) | 7 (0.140) | 6/134 | 5.3 | 21.6% | coding (116/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | = 2039157 | 24 (0.490) | coding (538/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | 21891 = | 46 (0.840) | 8 (0.160) | 6/134 | 5.3 | 13.4% | intergenic (‑116/+317) | ECB_00021/ECB_00022 | putative usher protein/conserved hypothetical protein |
| ? | REL606 | 22087 = | 62 (1.270) | intergenic (‑312/+121) | ECB_00021/ECB_00022 | putative usher protein/conserved hypothetical protein | |||||
| * | ? | REL606 | 4487211 = | 115 (2.110) | 7 (0.140) | 6/140 | 5.5 | 6.2% | coding (33/1119 nt) | yjhC | predicted oxidoreductase |
| ? | REL606 | 4487425 = | 103 (2.030) | coding (247/1119 nt) | yjhC | predicted oxidoreductase | |||||
| * | ? | REL606 | 2039335 = | 28 (0.510) | 7 (0.140) | 6/138 | 5.5 | 19.0% | coding (360/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | 2039563 = | 34 (0.680) | coding (132/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | 4486353 = | 102 (1.870) | 6 (0.130) | 5/130 | 5.7 | 6.1% | coding (404/1218 nt) | yjhB | predicted transporter |
| ? | REL606 | 4486544 = | 97 (2.060) | coding (595/1218 nt) | yjhB | predicted transporter | |||||