mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,174,648 | 0 | T | G | 35.3% | 56.1 / 12.1 | 35 | V409G (GTG→GGG) | dld | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
| * | REL606 | 3,492,082 | 0 | T | G | 35.1% | 91.3 / 22.5 | 57 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 2,296,329 | 0 | A | C | 33.9% | 112.0 / 20.4 | 56 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 4,574,252 | 0 | T | G | 28.2% | 78.3 / 11.7 | 39 | S5S (TCA→TCC) | hpaX | hypothetical 4‑hydroxyphenylacetate permease |
| * | REL606 | 1,484,105 | 0 | A | G | 27.3% | 65.8 / 11.9 | 33 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 1,882,526 | 0 | T | G | 25.3% | 159.0 / 10.9 | 79 | I21S (ATT→AGT) | manZ | mannose‑specific enzyme IID component of PTS |
| * | REL606 | 1,747,903 | 0 | G | T | 23.6% | 238.7 / 53.3 | 89 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 24 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2042274 | 120 (2.120) | 13 (0.260) | 6/134 | 4.4 | 12.1% | coding (547/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | = 2042743 | 82 (1.620) | coding (78/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | = 3022729 | 130 (2.300) | 7 (0.130) | 6/140 | 4.6 | 6.4% | intergenic (‑45/+529) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase |
| ? | REL606 | = 3023284 | 83 (1.570) | coding (439/465 nt) | ECB_02822 | bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||
| * | ? | REL606 | = 4520817 | 137 (2.420) | 6 (0.120) | 4/134 | 5.2 | 5.7% | intergenic (‑1178/‑278) | yjhA/fimB | N‑acetylnuraminic acid outer membrane channel protein/recombinase involved in phase variation; regulator for fimA; b4312_1 |
| ? | REL606 | = 4521290 | 77 (1.530) | pseudogene (196/498 nt) | fimB | recombinase involved in phase variation; regulator for fimA; b4312_1 | |||||
| * | ? | REL606 | = 3737265 | 145 (2.560) | 5 (0.100) | 4/134 | 5.2 | 4.6% | coding (562/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | = 3737614 | 76 (1.510) | coding (213/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| * | ? | REL606 | 2039854 = | 71 (1.250) | 6 (0.120) | 4/134 | 5.2 | 7.2% | coding (275/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040304 = | 91 (1.800) | coding (1080/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| * | ? | REL606 | = 2038439 | 66 (1.170) | 5 (0.100) | 4/134 | 5.2 | 7.6% | coding (510/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | = 2038932 | 63 (1.250) | coding (17/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | = 1600647 | 87 (1.540) | 5 (0.100) | 4/132 | 5.2 | 6.1% | intergenic (‑595/‑158) | ydfJ/ydfK | predicted transporter/predicted DNA‑binding transcriptional regulator |
| ? | REL606 | = 1601008 | NA (NA) | coding (204/267 nt) | ydfK | predicted DNA‑binding transcriptional regulator | |||||
| * | ? | REL606 | 3022392 = | 102 (1.800) | 6 (0.120) | 4/136 | 5.3 | 5.5% | coding (293/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022865 = | 114 (2.220) | intergenic (‑181/+393) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||
| * | ? | REL606 | 3021732 = | 106 (1.870) | 6 (0.120) | 4/138 | 5.3 | 5.8% | coding (953/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022271 = | 99 (1.900) | coding (414/1140 nt) | ECB_02821 | hypothetical protein | |||||
| * | ? | REL606 | = 3021607 | 118 (2.080) | 5 (0.100) | 4/138 | 5.3 | 5.1% | coding (1078/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | = 3022022 | 76 (1.460) | coding (663/1140 nt) | ECB_02821 | hypothetical protein | |||||