mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutation | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 4808205 | 4808218 | 14 | 32 [0] | [0] 36 | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 182013 | 76 (1.740) | 39 (0.930) +TTTCG |
11/254 | 2.8 | 34.8% | intergenic (+2/+63) | PP_5SB/PP_0160 | 5S ribosomal RNA/ferrioxamine receptor |
| ? | NC_002947 | = 1330518 | NA (NA) | intergenic (+43/‑264) | PP_5SE/PP_1157 | 5S ribosomal RNA/acetolactate synthase | |||||
| * | ? | NC_002947 | 337784 = | 58 (1.330) | 15 (0.440) | 14/208 | 1.6 | 29.5% | intergenic (‑31/+98) | PP_0279/PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| ? | NC_002947 | 337868 = | 26 (0.750) | intergenic (‑115/+14) | PP_0279/PP_0280 | hypothetical protein/amino acid ABC transporter permease | |||||
| * | ? | NC_002947 | = 652785 | 32 (0.730) | 20 (0.540) | 15/224 | 1.7 | 59.6% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4808204 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | NC_002947 | 1499443 = | 30 (0.690) | 15 (0.420) | 14/218 | 1.7 | 38.6% | intergenic (+13/‑153) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | 1499526 = | 23 (0.640) | intergenic (+96/‑70) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
| * | ? | NC_002947 | 1798193 = | 47 (1.080) | 14 (0.330) | 12/260 | 2.7 | 23.1% | coding (74/1128 nt) | lpxB | lipid‑A‑disaccharide synthase |
| ? | NC_002947 | 1798250 = | 47 (1.090) | coding (131/1128 nt) | lpxB | lipid‑A‑disaccharide synthase | |||||
| * | ? | NC_002947 | = 1851531 | 28 (0.660) | 22 (0.520) +CTA |
19/250 | 1.4 | 43.3% | coding (575/2241 nt) | relA | ATP:GTP 3'‑pyrophosphotransferase |
| ? | NC_002947 | 1851532 = | 30 (0.690) | coding (576/2241 nt) | relA | ATP:GTP 3'‑pyrophosphotransferase | |||||
| * | ? | NC_002947 | 1967188 = | 39 (0.890) | 15 (0.460) | 14/198 | 1.5 | 41.5% | intergenic (+15/+104) | PP_1762/yciK | hypothetical protein/putative oxidoreductase |
| ? | NC_002947 | 1967284 = | 13 (0.400) | intergenic (+111/+8) | PP_1762/yciK | hypothetical protein/putative oxidoreductase | |||||
| * | ? | NC_002947 | 4586063 = | 8 (0.180) | 8 (0.260) | 8/188 | 2.6 | 50.5% | intergenic (+102/+115) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | 4586167 = | 10 (0.320) | intergenic (+206/+11) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947 | = 4586100 | 8 (0.180) | 17 (0.550) | 14/188 | 1.3 | 68.4% | intergenic (+139/+78) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | = 4586128 | 10 (0.320) | intergenic (+167/+50) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947 | 4635429 = | 18 (0.410) | 26 (0.590) | 24/264 | 1.0 | 59.8% | coding (373/639 nt) | uvrY | BarA/UvrY two‑componenent system response regulator |
| ? | NC_002947 | = 4635455 | 17 (0.390) | coding (347/639 nt) | uvrY | BarA/UvrY two‑componenent system response regulator | |||||
| * | ? | NC_002947 | = 4647641 | 26 (0.590) | 9 (0.290) | 9/186 | 2.3 | 30.9% | intergenic (+48/+83) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
| ? | NC_002947 | = 4647671 | 22 (0.710) | intergenic (+78/+53) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
| * | ? | NC_002947 | 4808219 = | 0 (0.000) | 24 (0.750) | 17/194 | 1.0 | 61.5% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988991 | 30 (0.930) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | 5201627 = | 38 (0.870) | 14 (0.450) | 10/190 | 2.1 | 45.6% | intergenic (‑65/‑115) | PP_4582/PP_4583 | membrane protein/putative Peptidase |
| ? | NC_002947 | 5201722 = | 6 (0.190) | intergenic (‑160/‑20) | PP_4582/PP_4583 | membrane protein/putative Peptidase | |||||
| * | ? | NC_002947 | 5307722 = | NA (NA) | 28 (0.680) | 18/248 | 1.5 | 76.8% | intergenic (‑118/+14) | PP_5SG/PP_23SG | 5S ribosomal RNA/23S ribosomal RNA |
| ? | NC_002947 | 5307725 = | 9 (0.210) | intergenic (‑121/+11) | PP_5SG/PP_23SG | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NC_002947 | 5477138 = | 5 (0.110) | 15 (0.500) | 12/182 | 1.6 | 70.7% | intergenic (+3/+109) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | 5477237 = | 9 (0.300) | intergenic (+102/+10) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
| * | ? | NC_002947 | = 5477178 | 5 (0.110) | 9 (0.300) | 8/182 | 2.5 | 59.1% | intergenic (+43/+69) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | = 5477195 | 9 (0.300) | intergenic (+60/+52) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
| * | ? | NC_002947 | 5947161 = | 42 (0.960) | 15 (0.370) | 12/244 | 2.5 | 28.6% | intergenic (‑97/+109) | ubiD/rho | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho |
| ? | NC_002947 | 5947230 = | 36 (0.890) | intergenic (‑166/+40) | ubiD/rho | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho | |||||
| * | ? | NC_002947 | = 6060500 | 46 (1.050) | 16 (0.410) | 14/236 | 2.0 | 26.9% | intergenic (+80/+101) | PP_5311/PP_5312 | signal transduction protein/hypothetical protein |
| ? | NC_002947 | = 6060559 | 46 (1.180) | intergenic (+139/+42) | PP_5311/PP_5312 | signal transduction protein/hypothetical protein | |||||