mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 936,169 | 0 | T | . | 40.6% | 148.3 / 107.7 | 70 | intergenic (‑13/+21) | ECDH1_RS04615/ECDH1_RS04620 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 936,293 | 0 | T | . | 34.6% | 230.4 / 137.5 | 112 | intergenic (‑27/+7) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 1,065,605 | 0 | A | T | 31.6% | 171.7 / 76.8 | 117 | intergenic (+40/‑23) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 936,297 | 0 | A | G | 31.5% | 247.8 / 130.9 | 156 | intergenic (‑31/+3) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 1,065,618 | 0 | A | G | 30.6% | 168.7 / 93.2 | 129 | intergenic (+53/‑10) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 1,065,614 | 0 | A | G | 28.7% | 171.7 / 80.1 | 122 | intergenic (+49/‑14) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 2,169,577 | 0 | T | G | 28.6% | 217.8 / 41.9 | 188 | R661R (CGA→CGC) | rsxC | electron transporter RsxC |
| * | DH1 | 3,448,526 | 0 | A | C | 28.0% | 588.1 / 85.8 | 318 | intergenic (‑86/+70) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 613,770 | 0 | C | A | 27.9% | 167.6 / 15.1 | 138 | intergenic (+631/+392) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 2,169,548 | 0 | G | T | 27.4% | 330.2 / 61.4 | 198 | P671Q (CCG→CAG) | rsxC | electron transporter RsxC |
| * | DH1 | 2,326,287 | 0 | G | T | 27.4% | 640.7 / 79.6 | 353 | intergenic (+207/+200) | yddM/fdnI | transcriptional regulator/formate dehydrogenase nitrate‑inducible cytochrome b556(Fdn) subunit |
| * | DH1 | 2,965,906 | 0 | T | G | 25.8% | 175.7 / 26.0 | 144 | intergenic (+139/‑356) | aqpZ/ybjE | aquaporin/transporter |
| * | DH1 | 4,122,124 | 0 | C | A | 25.6% | 320.5 / 17.8 | 211 | intergenic (‑15/+22) | ECDH1_RS20430/ECDH1_RS20435 | tRNA‑Gly/tRNA‑Gly |
| * | DH1 | 613,597 | 0 | G | C | 24.3% | 295.9 / 37.3 | 204 | intergenic (+458/+565) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 2,158,108 | 0 | C | G | 24.2% | 591.0 / 46.1 | 235 | intergenic (+20/+27) | slyA/slyB | SlyA family transcriptional regulator/hypothetical protein |
| * | DH1 | 936,278 | 1 | . | T | 24.1% | 142.1 / 68.7 | 58 | intergenic (‑12/+22) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 2,169,781 | 0 | G | T | 22.2% | 280.0 / 37.7 | 174 | A593A (GCC→GCA) | rsxC | electron transporter RsxC |
| * | DH1 | 2,945,535 | 0 | T | A | 21.9% | 379.6 / 38.3 | 232 | P787P (CCA→CCT) | ftsK | cell division protein FtsK |
| * | DH1 | 3,448,520 | 0 | A | C | 21.7% | 745.5 / 48.5 | 318 | intergenic (‑80/+76) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 2,945,554 | 0 | G | T | 21.5% | 450.2 / 17.1 | 220 | P781Q (CCG→CAG) | ftsK | cell division protein FtsK |
| Marginal new junction evidence (lowest skew 10 of 37 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 2668875 | 276 (0.790) | 89 (0.280) | 76/268 | 9.0 | 27.9% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | = 2670672 | 214 (0.680) | coding (306/789 nt) | stfP | integrase | |||||
| * | ? | DH1 | 2668875 = | 244 (0.770) | 64 (0.200) | 54/268 | 14.3 | 20.9% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | 2670674 = | NA (NA) | noncoding (1/242 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 1355505 | 348 (0.990) | 47 (0.150) | 31/260 | 21.7 | 17.1% | noncoding (54/348 nt) | repeat_region | repeat region |
| ? | DH1 | 3099693 = | 156 (0.510) | noncoding (58/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | = 2590941 | 297 (0.850) | 57 (0.190) | 30/260 | 22.1 | 25.3% | intergenic (+1/‑209) | ECDH1_RS12805/ECDH1_RS12810 | tRNA‑Tyr/tRNA‑Tyr |
| ? | DH1 | 2591414 = | 80 (0.260) | noncoding (199/555 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 3183985 = | 358 (1.020) | 62 (0.190) +GATTGTTTCTTC |
31/276 | 22.9 | 22.9% | intergenic (+379/‑1) | asnB/ECDH1_RS15770 | asparagine synthetase B/tRNA‑Met |
| ? | DH1 | = 3184256 | 97 (0.280) | intergenic (+2/‑33) | ECDH1_RS15780/ECDH1_RS15785 | tRNA‑Gln/tRNA‑Gln | |||||
| * | ? | DH1 | 1355843 = | 88 (0.250) | 85 (0.240) +C |
30/298 | 25.0 | 25.5% | intergenic (‑44/+3) | ECDH1_RS06675/ECDH1_RS06680 | tRNA‑Val/tRNA‑Val |
| ? | DH1 | = 3100565 | 413 (1.180) | noncoding (1/76 nt) | ECDH1_RS15385 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355843 = | 88 (0.250) | 98 (0.280) +C |
30/298 | 25.0 | 38.7% | intergenic (‑44/+3) | ECDH1_RS06675/ECDH1_RS06680 | tRNA‑Val/tRNA‑Val |
| ? | DH1 | = 3099750 | 225 (0.640) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355843 = | 88 (0.250) | 173 (0.500) +C |
30/298 | 25.0 | 66.4% | intergenic (‑44/+3) | ECDH1_RS06675/ECDH1_RS06680 | tRNA‑Val/tRNA‑Val |
| ? | DH1 | = 3099542 | NA (NA) | noncoding (268/268 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 3970042 | 433 (1.230) | 24 (0.070) | 24/282 | 26.6 | 5.5% | intergenic (‑128/‑86) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | = 3970338 | 420 (1.270) | intergenic (+22/+58) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||
| * | ? | DH1 | 3970034 = | 428 (1.220) | 22 (0.070) | 21/282 | 28.2 | 5.1% | intergenic (‑120/‑94) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | 3970348 = | 423 (1.280) | intergenic (+32/+48) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||