mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 37 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 936,169 | 0 | T | . | 37.1% | 239.9 / 150.6 | 106 | intergenic (‑13/+21) | ECDH1_RS04615/ECDH1_RS04620 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 3,906,832 | 0 | C | A | 36.1% | 108.7 / 18.3 | 92 | intergenic (+3/‑32) | ECDH1_RS19315/ECDH1_RS19320 | tRNA‑Leu/tRNA‑Leu |
| * | DH1 | 936,293 | 0 | T | . | 34.2% | 362.5 / 210.9 | 163 | intergenic (‑27/+7) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 2,169,548 | 0 | G | T | 30.6% | 502.2 / 82.1 | 276 | P671Q (CCG→CAG) | rsxC | electron transporter RsxC |
| * | DH1 | 2,326,287 | 0 | G | T | 29.9% | 972.9 / 171.0 | 544 | intergenic (+207/+200) | yddM/fdnI | transcriptional regulator/formate dehydrogenase nitrate‑inducible cytochrome b556(Fdn) subunit |
| * | DH1 | 2,169,577 | 0 | T | G | 29.5% | 263.7 / 65.6 | 253 | R661R (CGA→CGC) | rsxC | electron transporter RsxC |
| * | DH1 | 936,297 | 0 | A | G | 29.0% | 391.8 / 181.0 | 226 | intergenic (‑31/+3) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 3,448,526 | 0 | A | C | 27.8% | 795.3 / 120.0 | 450 | intergenic (‑86/+70) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 2,591,513 | 0 | T | G | 27.1% | 269.1 / 59.1 | 297 | D86A (GAC→GCC) | ECDH1_RS12815 | hypothetical protein |
| * | DH1 | 613,597 | 0 | G | C | 26.4% | 333.6 / 54.0 | 258 | intergenic (+458/+565) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 2,169,673 | 0 | A | T | 25.9% | 140.8 / 35.2 | 161 | R629R (CGT→CGA) | rsxC | electron transporter RsxC |
| * | DH1 | 936,278 | 1 | . | T | 25.7% | 249.0 / 135.3 | 102 | intergenic (‑12/+22) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 2,169,598 | 0 | G | T | 25.6% | 307.1 / 30.7 | 216 | A654A (GCC→GCA) | rsxC | electron transporter RsxC |
| * | DH1 | 613,613 | 0 | T | G | 25.5% | 241.7 / 35.4 | 225 | intergenic (+474/+549) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 4,122,124 | 0 | C | A | 25.2% | 426.7 / 18.5 | 291 | intergenic (‑15/+22) | ECDH1_RS20430/ECDH1_RS20435 | tRNA‑Gly/tRNA‑Gly |
| * | DH1 | 1,065,605 | 0 | A | T | 24.9% | 342.5 / 112.6 | 218 | intergenic (+40/‑23) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 3,906,837 | 0 | C | G | 24.2% | 163.6 / 17.6 | 105 | intergenic (+8/‑27) | ECDH1_RS19315/ECDH1_RS19320 | tRNA‑Leu/tRNA‑Leu |
| * | DH1 | 1,065,618 | 0 | A | G | 23.7% | 377.7 / 132.5 | 240 | intergenic (+53/‑10) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 2,169,568 | 0 | C | G | 23.2% | 499.4 / 28.1 | 254 | A664A (GCG→GCC) | rsxC | electron transporter RsxC |
| * | DH1 | 2,169,595 | 0 | G | T | 22.9% | 340.5 / 13.1 | 236 | V655V (GTC→GTA) | rsxC | electron transporter RsxC |
| Marginal new junction evidence (lowest skew 10 of 38 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | 2668875 = | 353 (0.750) | 88 (0.190) | 75/268 | 19.6 | 20.1% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | 2670674 = | NA (NA) | noncoding (1/242 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 2668875 | 402 (0.760) | 75 (0.160) | 65/268 | 23.0 | 16.5% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | = 2670672 | 399 (0.850) | coding (306/789 nt) | stfP | integrase | |||||
| * | ? | DH1 | 1355966 = | 202 (0.380) | 152 (0.300) +CTTC |
58/292 | 28.4 | 37.4% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3099750 | 321 (0.610) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355966 = | 202 (0.380) | 229 (0.450) +CTTC |
58/292 | 28.4 | 53.8% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3099542 | NA (NA) | noncoding (268/268 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 1355966 = | 202 (0.380) | 129 (0.250) +CTTC |
56/292 | 29.2 | 25.2% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3100565 | 586 (1.110) | noncoding (1/76 nt) | ECDH1_RS15385 | tRNA‑Lys | |||||
| * | ? | DH1 | = 1355505 | 502 (0.950) | 83 (0.180) | 47/260 | 29.3 | 20.2% | noncoding (54/348 nt) | repeat_region | repeat region |
| ? | DH1 | 3099693 = | 220 (0.480) | noncoding (58/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | = 3099328 | 447 (0.850) | 75 (0.160) | 41/260 | 32.1 | 19.8% | noncoding (54/268 nt) | repeat_region | repeat region |
| ? | DH1 | 3099693 = | 220 (0.480) | noncoding (58/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | = 2590941 | 455 (0.860) | 81 (0.180) | 37/260 | 34.1 | 23.2% | intergenic (+1/‑209) | ECDH1_RS12805/ECDH1_RS12810 | tRNA‑Tyr/tRNA‑Tyr |
| ? | DH1 | 2591414 = | 142 (0.310) | noncoding (199/555 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 3183985 = | 509 (0.970) | 74 (0.150) +GATTGTTTCTTC |
36/276 | 36.5 | 19.9% | intergenic (+379/‑1) | asnB/ECDH1_RS15770 | asparagine synthetase B/tRNA‑Met |
| ? | DH1 | = 3184256 | 141 (0.270) | intergenic (+2/‑33) | ECDH1_RS15780/ECDH1_RS15785 | tRNA‑Gln/tRNA‑Gln | |||||
| * | ? | DH1 | = 1519281 | 367 (0.700) | 52 (0.110) +AACCTTCTAATT |
32/276 | 38.7 | 13.4% | coding (788/900 nt) | yfaD | transposase |
| ? | DH1 | 1519282 = | 367 (0.700) | coding (787/900 nt) | yfaD | transposase | |||||