mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 115 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,142,838 | 0 | A | G | 74.8% | 160.6 / 48.9 | 116 | N304N (AAT→AAC) | asmA | predicted assembly protein |
| * | W3110S.gb | 75,154 | 0 | G | A | 74.6% | 243.5 / 82.2 | 177 | P109P (CCC→CCT) | tbpA | thiamin transporter subunit |
| * | W3110S.gb | 2,142,832 | 0 | T | C | 74.6% | 164.6 / 51.1 | 118 | E306E (GAA→GAG) | asmA | predicted assembly protein |
| * | W3110S.gb | 4,459,476 | 0 | C | T | 73.7% | 69.5 / 24.8 | 57 | L272L (TTG→TTA) | fbp | fructose‑1,6‑bisphosphatase I |
| * | W3110S.gb | 4,459,482 | 0 | C | T | 73.7% | 69.3 / 24.0 | 57 | L270L (CTG→CTA) | fbp | fructose‑1,6‑bisphosphatase I |
| * | W3110S.gb | 3,396,868 | 0 | T | G | 73.6% | 149.3 / 50.0 | 87 | T261T (ACA→ACC) | rng | ribonuclease G |
| * | W3110S.gb | 4,269,458 | 0 | A | C | 73.3% | 93.6 / 41.3 | 75 | M29L (ATG→CTG) | alr | alanine racemase 1, PLP‑binding, biosynthetic |
| * | W3110S.gb | 4,333,658 | 0 | C | T | 73.3% | 162.2 / 64.5 | 131 | T615I (ACT→ATT) | yjdA | conserved hypothetical protein with nucleoside triphosphate hydrolase domain |
| * | W3110S.gb | 3,654,574 | 0 | A | G | 72.6% | 243.9 / 94.3 | 186 | N407N (AAT→AAC) | yifK | predicted transporter |
| * | W3110S.gb | 3,414,597 | 0 | T | C | 72.5% | 124.6 / 43.9 | 98 | R293R (CGT→CGC) | acrE | cytoplasmic membrane lipoprotein |
| * | W3110S.gb | 3,843,932 | 0 | A | G | 72.4% | 224.9 / 89.2 | 174 | F169F (TTT→TTC) | rfaC | ADP‑heptose:LPS heptosyl transferase I |
| * | W3110S.gb | 4,305,696 | 0 | A | G | 72.4% | 243.5 / 96.4 | 192 | A288A (GCT→GCC) | yjcQ | predicted multidrug efflux system component |
| * | W3110S.gb | 4,305,698 | 0 | C | T | 72.4% | 236.6 / 101.5 | 192 | A288T (GCT→ACT) | yjcQ | predicted multidrug efflux system component |
| * | W3110S.gb | 4,305,701 | 0 | C | T | 72.4% | 235.6 / 102.0 | 192 | V287I (GTT→ATT) | yjcQ | predicted multidrug efflux system component |
| * | W3110S.gb | 4,305,704 | 0 | C | A | 72.4% | 263.2 / 137.0 | 192 | A286S (GCC→TCC) | yjcQ | predicted multidrug efflux system component |
| * | W3110S.gb | 2,142,844 | 0 | G | T | 72.1% | 130.6 / 73.6 | 104 | T302T (ACC→ACA) | asmA | predicted assembly protein |
| * | W3110S.gb | 699,390 | 0 | G | A | 71.4% | 204.3 / 111.0 | 199 | H70H (CAC→CAT) | asnB | asparagine synthetase B |
| * | W3110S.gb | 699,387 | 0 | T | C | 71.0% | 218.8 / 107.0 | 200 | V71V (GTA→GTG) | asnB | asparagine synthetase B |
| * | W3110S.gb | 2,162,808 | 0 | G | A | 70.9% | 226.6 / 111.1 | 196 | A762A (GCG→GCA) | mdtC | multidrug efflux system, subunit C |
| * | W3110S.gb | 2,999,954 | 0 | G | T | 70.7% | 49.3 / 23.4 | 41 | A318A (GCG→GCT) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |