mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 402 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,101,248 | 0 | A | G | 74.5% | 156.7 / 55.8 | 94 | P226P (CCT→CCC) | csgG | outer membrane lipoprotein |
| * | W3110S.gb | 2,696,430 | 0 | C | T | 74.3% | 118.4 / 42.4 | 74 | V39V (GTG→GTA) | tadA | tRNA‑specific adenosine deaminase |
| * | W3110S.gb | 2,696,454 | 0 | T | C | 74.3% | 123.9 / 40.8 | 74 | K31K (AAA→AAG) | tadA | tRNA‑specific adenosine deaminase |
| * | W3110S.gb | 1,487,144 | 0 | T | G | 74.3% | 194.7 / 60.0 | 101 | V771V (GTT→GTG) | hrpA | ATP‑dependent helicase |
| * | W3110S.gb | 3,724,547 | 0 | T | A | 74.3% | 180.5 / 68.4 | 101 | I511I (ATT→ATA) | glmS | L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| * | W3110S.gb | 2,007,769 | 0 | A | G | 74.0% | 171.5 / 63.1 | 104 | E110E (GAA→GAG) | fliS | flagellar protein potentiates polymerization |
| * | W3110S.gb | 1,157,018 | 0 | G | A | 73.6% | 111.1 / 43.8 | 72 | Q106Q (CAG→CAA) | tmk | thymidylate kinase |
| * | W3110S.gb | 1,157,021 | 0 | G | C | 73.6% | 121.2 / 49.9 | 72 | A107A (GCG→GCC) | tmk | thymidylate kinase |
| * | W3110S.gb | 3,186,293 | 1 | . | T | 73.3% | 30.8 / 10.0 | 15 | coding (238/2466 nt) | yqiG | predicted outer membrane usher protein |
| * | W3110S.gb | 3,937,998 | 1 | . | A | 73.3% | 30.3 / 10.4 | 15 | coding (450/1005 nt) | dppF | dipeptide transporter |
| * | W3110S.gb | 823,115 | 0 | T | C | 73.2% | 86.6 / 33.0 | 56 | E349E (GAA→GAG) | ybhO | cardiolipin synthase 2 |
| * | W3110S.gb | 36,385 | 0 | A | G | 73.1% | 77.4 / 30.4 | 52 | F485F (TTT→TTC) | caiC | predicted crotonobetaine CoA ligase:carnitine CoA ligase |
| * | W3110S.gb | 3,323,521 | 0 | C | T | 73.0% | 109.5 / 46.9 | 74 | K135K (AAG→AAA) | glmM | phosphoglucosamine mutase |
| * | W3110S.gb | 2,118,857 | 0 | G | T | 72.9% | 144.6 / 130.2 | 151 | L136L (CTC→CTA) | wcaL | predicted glycosyl transferase |
| * | W3110S.gb | 1,713,988 | 0 | G | A | 72.7% | 61.7 / 26.1 | 44 | intergenic (+116/‑495) | nth/ydgR | DNA glycosylase and apyrimidinic (AP) lyase/predicted transporter |
| * | W3110S.gb | 3,172,624 | 0 | G | A | 72.6% | 156.6 / 70.6 | 106 | L477L (CTG→TTG) | parE | DNA topoisomerase IV, subunit B |
| * | W3110S.gb | 3,323,554 | 0 | C | T | 72.6% | 108.6 / 46.5 | 73 | A124A (GCG→GCA) | glmM | phosphoglucosamine mutase |
| * | W3110S.gb | 486,797 | 0 | T | A | 72.5% | 105.2 / 51.4 | 69 | S346S (TCT→TCA) | kefA | fused mechanosensitive channel proteins |
| * | W3110S.gb | 2,794,225 | 0 | A | T | 72.4% | 90.3 / 40.8 | 58 | I439I (ATA→ATT) | gabP | gamma‑aminobutyrate transporter |
| * | W3110S.gb | 2,007,787 | 0 | C | T | 72.4% | 155.1 / 70.4 | 105 | R116R (CGC→CGT) | fliS | flagellar protein potentiates polymerization |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2756436 | 13 (0.400) | 7 (0.240) +TTATTT |
3/100 | 0.1 | 7.9% | coding (821/957 nt) | yfjH | hypothetical protein |
| ? | W3110S.gb | 4484645 = | 169 (5.230) | coding (234/1197 nt) | yjgN | conserved inner membrane protein | |||||