mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 293 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,902,091 | 0 | C | A | 74.2% | 40.8 / 23.7 | 31 | E652* (GAG→TAG) | nrdD | anaerobic ribonucleoside‑triphosphate reductase |
| * | minE | 2,628,365 | 0 | C | T | 73.5% | 200.5 / 80.3 | 114 | P279S (CCG→TCG) | livJ | leucine/isoleucine/valine transporter subunit |
| * | minE | 2,289,607 | 1 | . | C | 73.3% | 76.6 / 25.2 | 30 | coding (319/2652 nt) | ppc | phosphoenolpyruvate carboxylase |
| * | minE | 771,770 | 0 | T | C | 72.7% | 33.5 / 11.5 | 22 | S39S (TCA→TCG) | hflD | predicted lysogenization regulator |
| * | minE | 773,908 | 1 | . | G | 72.4% | 69.3 / 25.0 | 30 | coding (299/654 nt) | ymfC | 23S rRNA pseudouridine synthase |
| * | minE | 717,230 | 0 | G | A | 71.1% | 66.3 / 33.2 | 45 | E82E (GAG→GAA) | yceH | conserved hypothetical protein |
| * | minE | 852,824 | 0 | A | T | 68.9% | 58.7 / 38.2 | 45 | intergenic (‑207/‑150) | yciC/ompW | predicted inner membrane protein/outer membrane protein W |
| * | minE | 470,861 | 0 | C | A | 68.4% | 10.8 / 17.1 | 19 | P76Q (CCG→CAG) | sucD | succinyl‑CoA synthetase, NAD(P)‑binding, alpha subunit |
| * | minE | 728,531 | 0 | G | . | 66.0% | 43.9 / 84.5 | 50 | coding (518/954 nt) | fabH | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase III |
| * | minE | 728,532 | 0 | A | . | 66.0% | 54.2 / 79.7 | 50 | coding (519/954 nt) | fabH | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase III |
| * | minE | 2,444,818 | 0 | A | G | 65.8% | 41.8 / 37.0 | 41 | Y106Y (TAT→TAC) | ilvD | dihydroxyacid dehydratase |
| * | minE | 2,444,809 | 0 | G | A | 64.3% | 40.6 / 40.5 | 42 | N109N (AAC→AAT) | ilvD | dihydroxyacid dehydratase |
| * | minE | 1,901,595 | 0 | C | G | 62.5% | 100.4 / 142.4 | 120 | G482G (GGG→GGC) | recB | exonuclease V (RecBCD complex), beta subunit |
| * | minE | 958,174 | 0 | A | G | 60.6% | 44.6 / 77.9 | 66 | V711A (GTC→GCC) | pqqL | predicted peptidase |
| * | minE | 2,753,142 | 0 | A | C | 60.6% | 43.7 / 31.4 | 33 | K83T (AAA→ACA) | zntR | DNA‑binding transcriptional activator |
| * | minE | 946,598 | 1 | . | C | 60.0% | 16.4 / 10.8 | 10 | coding (987/1551 nt) | ddpA | D‑Ala‑D‑Ala transporter subunit |
| * | minE | 1,901,601 | 0 | T | A | 60.0% | 83.6 / 157.8 | 125 | S480S (TCA→TCT) | recB | exonuclease V (RecBCD complex), beta subunit |
| * | minE | 1,901,628 | 0 | G | A | 59.5% | 90.1 / 151.3 | 126 | R471R (CGC→CGT) | recB | exonuclease V (RecBCD complex), beta subunit |
| * | minE | 2,312,331 | 0 | C | A | 57.9% | ‑1.3 / 92.1 | 57 | A259E (GCG→GAG) | menA | 1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase |
| * | minE | 1,453,828 | 0 | G | C | 56.9% | 21.8 / 64.2 | 51 | V56V (GTG→GTC) | atoB | acetyl‑CoA acetyltransferase |