mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 280 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2857675 = | 196 (0.960) | 5 (0.030) | 4/140 | NT | 3.0% | intergenic (+71/‑172) | nixA/nhoA | High‑affinity nickel‑transport protein NixA/N‑hydroxyarylamine O‑acetyltransferase |
| ? | USA300TCH1516_ALE | 2857737 = | 157 (0.880) | intergenic (+133/‑110) | nixA/nhoA | High‑affinity nickel‑transport protein NixA/N‑hydroxyarylamine O‑acetyltransferase | |||||
| * | ? | USA300TCH1516_ALE | = 2830200 | 174 (0.850) | 7 (0.040) | 4/138 | NT | 4.7% | intergenic (+28/+419) | icaC/lipA_2 | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1 |
| ? | USA300TCH1516_ALE | = 2830235 | 137 (0.780) | intergenic (+63/+384) | icaC/lipA_2 | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1 | |||||
| * | ? | USA300TCH1516_ALE | = 2812218 | 141 (0.690) | 6 (0.030) | 5/140 | NT | 4.3% | coding (6111/6816 nt) | sraP | Serine‑rich adhesin for platelets |
| ? | USA300TCH1516_ALE | = 2812247 | 142 (0.800) | coding (6082/6816 nt) | sraP | Serine‑rich adhesin for platelets | |||||
| * | ? | USA300TCH1516_ALE | 2810552 = | 215 (1.060) | 4 (0.020) | 4/150 | NT | 1.9% | coding (832/1212 nt) | secY2 | Accessory Sec system protein translocase subunit SecY2 |
| ? | USA300TCH1516_ALE | 2810585 = | 201 (1.050) | coding (799/1212 nt) | secY2 | Accessory Sec system protein translocase subunit SecY2 | |||||
| * | ? | USA300TCH1516_ALE | = 2785840 | 246 (1.210) | 5 (0.030) | 4/150 | NT | 2.1% | intergenic (‑53/+371) | aur/isaB | Zinc metalloproteinase aureolysin/Immunodominant staphylococcal antigen B |
| ? | USA300TCH1516_ALE | = 2785854 | 240 (1.260) | intergenic (‑67/+357) | aur/isaB | Zinc metalloproteinase aureolysin/Immunodominant staphylococcal antigen B | |||||
| * | ? | USA300TCH1516_ALE | = 2748981 | 217 (1.070) | 4 (0.020) | 4/150 | NT | 1.9% | coding (185/213 nt) | USA300HOU_RS14150 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2748996 | 214 (1.120) | coding (170/213 nt) | USA300HOU_RS14150 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2748533 | 180 (0.880) | 4 (0.020) | 4/136 | NT | 2.3% | coding (140/444 nt) | hmoB | Heme‑degrading monooxygenase HmoB |
| ? | USA300TCH1516_ALE | = 2748555 | 190 (1.100) | coding (118/444 nt) | hmoB | Heme‑degrading monooxygenase HmoB | |||||
| * | ? | USA300TCH1516_ALE | 2748154 = | 190 (0.930) | 4 (0.020) | 4/144 | NT | 2.3% | intergenic (‑98/+75) | acsA_2/hmoB | Acetyl‑coenzyme A synthetase/Heme‑degrading monooxygenase HmoB |
| ? | USA300TCH1516_ALE | 2748202 = | 171 (0.930) | intergenic (‑146/+27) | acsA_2/hmoB | Acetyl‑coenzyme A synthetase/Heme‑degrading monooxygenase HmoB | |||||
| * | ? | USA300TCH1516_ALE | = 2721747 | 182 (0.890) | 7 (0.040) | 6/146 | NT | 3.9% | intergenic (+28/+119) | USA300HOU_RS14000/yciC_3 | putative hydrolase/Putative metal chaperone YciC |
| ? | USA300TCH1516_ALE | = 2721776 | 176 (0.950) | intergenic (+57/+90) | USA300HOU_RS14000/yciC_3 | putative hydrolase/Putative metal chaperone YciC | |||||
| * | ? | USA300TCH1516_ALE | 2684946 = | 213 (1.050) | 6 (0.030) | 4/142 | NT | 3.3% | intergenic (‑14/‑395) | ogt/clpL | Methylated‑DNA‑‑protein‑cysteine methyltransferase/ATP‑dependent Clp protease ATP‑binding subunit ClpL |
| ? | USA300TCH1516_ALE | 2684983 = | 162 (0.900) | intergenic (‑51/‑358) | ogt/clpL | Methylated‑DNA‑‑protein‑cysteine methyltransferase/ATP‑dependent Clp protease ATP‑binding subunit ClpL | |||||