mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 28 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 832,048 | 0 | T | G | 64.7% | 3.1 / 13.8 | 17 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 3,578,446 | 0 | A | C | 61.5% | ‑0.7 / 10.0 | 13 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltransferase |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 60.0% | 7.5 / 30.6 | 20 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 2,994,529 | 0 | A | C | 58.8% | 4.8 / 14.8 | 17 | T289P (ACC→CCC) | xdhA | xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| * | NZ_CP009273 | 3,774,215 | 0 | T | G | 56.2% | 6.4 / 13.3 | 18 | G343G (GGT→GGG) | lldD | quinone‑dependent L‑lactate dehydrogenase |
| * | NZ_CP009273 | 997,447 | 0 | T | G | 55.6% | 4.2 / 11.5 | 19 | V62G (GTA→GGA) | elfG | fimbrial protein |
| * | NZ_CP009273 | 1,504,652 | 0 | C | A | 55.6% | 4.8 / 13.5 | 9 | S131R (AGC→AGA) | ydcR | PLP‑dependent aminotransferase family protein |
| * | NZ_CP009273 | 2,133,636 | 0 | G | T | 55.6% | 3.6 / 12.7 | 9 | N486K (AAC→AAA) | asmA | outer membrane assembly protein AsmA |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 55.2% | 30.6 / 35.1 | 29 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 15,382 | 0 | A | G | 54.5% | 7.2 / 11.9 | 11 | intergenic (+84/‑63) | dnaJ/BW25113_RS00080 | molecular chaperone DnaJ/IS4‑like element IS421 family transposase |
| * | NZ_CP009273 | 497,036 | 0 | A | C | 54.5% | 7.6 / 11.4 | 11 | G553G (GGT→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 2,285,537 | 0 | A | C | 54.5% | 7.0 / 10.1 | 11 | V118G (GTC→GGC) | ccmH | cytochrome c‑type biogenesis thiol:disulfide oxidoreductase CcmH |
| * | NZ_CP009273 | 2,636,048 | 0 | T | G | 54.5% | 5.6 / 11.0 | 11 | A52A (GCA→GCC) | rodZ | cytoskeleton protein RodZ |
| * | NZ_CP009273 | 431,960 | 0 | A | C | 53.8% | 8.1 / 14.1 | 13 | T291P (ACC→CCC) | thiL | thiamine‑phosphate kinase |
| * | NZ_CP009273 | 3,390,909 | 0 | A | C | 53.8% | 6.1 / 11.9 | 13 | G82G (GGT→GGG) | rng | ribonuclease G |
| * | NZ_CP009273 | 4,501,865 | 0 | A | C | 53.8% | 5.5 / 11.6 | 13 | L123V (TTG→GTG) | fecD | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| * | NZ_CP009273 | 1,318,440 | 0 | T | G | 52.9% | 9.3 / 16.0 | 17 | V29G (GTG→GGG) | yciO | L‑threonylcarbamoyladenylate synthase |
| * | NZ_CP009273 | 1,548,257 | 0 | T | G | 52.9% | 9.5 / 16.2 | 17 | Y557S (TAC→TCC) | maeA | malate dehydrogenase |
| * | NZ_CP009273 | 3,806,432 | 0 | A | C | 52.6% | 9.6 / 14.9 | 19 | T114T (ACA→ACC) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 52.6% | ‑2.2 / 15.3 | 19 | L57L (CTG→TTG) | yihO | MFS transporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 281585 = | 41 (1.900) | 3 (0.150) | 3/148 | 1.7 | 7.9% | coding (480/1383 nt) | yagG | MFS transporter |
| ? | NZ_CP009273 | 281607 = | 33 (1.700) | coding (502/1383 nt) | yagG | MFS transporter | |||||
| * | ? | NZ_CP009273 | = 278223 | 28 (1.300) | 3 (0.150) | 3/148 | 1.7 | 9.8% | coding (235/909 nt) | yagE | 2‑keto‑3‑deoxygluconate aldolase |
| ? | NZ_CP009273 | = 278229 | 30 (1.540) | coding (241/909 nt) | yagE | 2‑keto‑3‑deoxygluconate aldolase | |||||