mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 60,701 | T→C | 7.1% | Q855R (CAG→CGG) | rapA ← | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
| RA | 70,326 | G→A | 6.5% | intergenic (‑278/‑61) | araB ← / → araC | L‑ribulokinase/ara regulon transcriptional activator; autorepressor |
| RA | 108,835 | A→G | 7.1% | Y186C (TAC→TGC) | secA → | preprotein translocase subunit, ATPase |
| RA | 129,050 | C→T | 6.4% | P380L (CCG→CTG) | lpd → | dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
| RA | 146,733 | G→A | 6.2% | intergenic (‑39/‑235) | panD ← / → yadD | aspartate 1‑decarboxylase/transposase_31 family protein |
| RA | 146,735 | T→C | 6.2% | intergenic (‑41/‑233) | panD ← / → yadD | aspartate 1‑decarboxylase/transposase_31 family protein |
| RA | 161,062 | G→A | 7.3% | A142V (GCG→GTG) | sfsA ← | sugar fermentation stimulation protein A |
| RA | 218,786 | T→C | 6.2% | intergenic (‑11/+101) | proS ← / ← tsaA | prolyl‑tRNA synthetase/tRNA‑Thr(GGU) m(6)t(6)A37 methyltransferase, SAM‑dependent |
| RA | 235,980 | A→G | 8.7% | F8S (TTC→TCC) | rnhA ← | ribonuclease HI, degrades RNA of DNA‑RNA hybrids |
| RA | 257,753 | C→T | 5.9% | I409I (ATC→ATT) | frsA → | fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 281,430 | T→A | 6.6% | E185V (GAG→GTG) | yagA ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| RA | 286,445 | A→G | 7.7% | S351G (AGC→GGC) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 328,376 | T→C | 8.3% | I120V (ATC→GTC) | betB ← | betaine aldehyde dehydrogenase, NAD‑dependent |
| RA | 343,237 | G→T | 7.7% | T118T (ACG→ACT) | yahK → | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing |
| RA | 395,468 | A→T | 7.0% | Y274N (TAT→AAT) | ampH ← | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase |
| RA | 435,172 | T→C | 8.3% | C12C (TGT→TGC) | nusB → | transcription antitermination protein |
| RA | 477,844 | C→A | 5.8% | A258A (GCG→GCT) | ylaB ← | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 491,948 | G→A | 5.9% | P179P (CCG→CCA) | apt → | adenine phosphoribosyltransferase |
| RA | 566,510 | G→C | 6.5% | pseudogene (135/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,513 | C→T | 6.5% | pseudogene (138/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 578,210 | T→C | 5.8% | V35A (GTC→GCC) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 578,809 | T→C | 6.5% | T29A (ACA→GCA) | borD ← | DLP12 prophage; putative lipoprotein |
| RA | 579,127 | T→C | 12.5% | intergenic (‑234/+57) | borD ← / ← ybcV | DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein |
| RA | 579,134 | T→C | 12.7% | intergenic (‑241/+50) | borD ← / ← ybcV | DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein |
| RA | 579,146 | A→G | 12.3% | intergenic (‑253/+38) | borD ← / ← ybcV | DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein |
| RA | 579,385 | A→G | 6.5% | N70N (AAT→AAC) | ybcV ← | DLP12 prophage; uncharacterized protein |
| RA | 579,457 | A→G | 5.7% | I46I (ATT→ATC) | ybcV ← | DLP12 prophage; uncharacterized protein |
| RA | 579,671 | T→C | 6.8% | intergenic (‑77/‑209) | ybcV ← / → ybcW | DLP12 prophage; uncharacterized protein/DLP12 prophage; uncharacterized protein |
| RA | 579,717 | A→C | 7.0% | intergenic (‑123/‑163) | ybcV ← / → ybcW | DLP12 prophage; uncharacterized protein/DLP12 prophage; uncharacterized protein |
| RA | 580,020 | G→A | 7.1% | R47R (AGG→AGA) | ybcW → | DLP12 prophage; uncharacterized protein |
| RA | 580,115 | C→T | 8.3% | intergenic (+29/+136) | ybcW → / ← ylcI | DLP12 prophage; uncharacterized protein/DUF3950 family protein, DLP12 prophage |
| RA | 580,119 | A→G | 8.2% | intergenic (+33/+132) | ybcW → / ← ylcI | DLP12 prophage; uncharacterized protein/DUF3950 family protein, DLP12 prophage |
| RA | 580,120 | C→T | 8.3% | intergenic (+34/+131) | ybcW → / ← ylcI | DLP12 prophage; uncharacterized protein/DUF3950 family protein, DLP12 prophage |
| RA | 580,302 | C→T | 6.0% | R48R (AGG→AGA) | ylcI ← | DUF3950 family protein, DLP12 prophage |
| RA | 580,830 | T→A | 8.4% | intergenic (‑385/‑4) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| RA | 580,831 | G→A | 8.8% | intergenic (‑386/‑3) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| RA | 594,154 | A→T | 7.9% | V206E (GTA→GAA) | cusS ← | copper‑sensing histidine kinase in two‑component regulatory system with CusR |
| RA | 626,267 | C→T | 9.3% | R66R (CGC→CGT) | entE → | 2,3‑dihydroxybenzoate‑AMP ligase component of enterobactin synthase multienzyme complex |
| RA | 659,205 | A→T | 7.7% | intergenic (+55/+46) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,206 | A→T | 7.7% | intergenic (+56/+45) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,207 | A→G | 7.7% | intergenic (+57/+44) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 687,912 | T→A | 9.8% | intergenic (‑165/+85) | gltI ← / ← insH1 | glutamate/aspartate periplasmic binding protein/IS5 transposase and trans‑activator |
| RA | 735,942 | C→T | 5.1% | A98V (GCC→GTC) | ybfC → | putative secreted protein |
| RA | 774,064 | C→A | 8.4% | T341T (ACC→ACA) | cydB → | cytochrome d terminal oxidase, subunit II |
| RA | 792,922 | C→T | 7.8% | W289* (TGG→TGA) | modF ← | molybdate ABC transporter ATPase |
| RA | 830,034 | T→C | 7.7% | N204D (AAC→GAC) | ybiH ← | DUF1956 domain‑containing tetR family putative transcriptional regulator |
| RA | 941,253 | C→T | 8.1% | H99Y (CAC→TAC) | dmsA → | dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 982,358 | C→T | 9.3% | P438S (CCA→TCA) | ldtD → | murein L,D‑transpeptidase |
| RA | 1,005,777 | A→G | 5.5% | *337* (TAA→TGA) | pyrD → | dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,006,299 | G→A | 5.6% | W116* (TGG→TGA) | zapC → | FtsZ stabilizer |
| RA | 1,137,271 | G→A | 6.9% | R333H (CGC→CAC) | flgI → | putative flagellar basal body protein |
| RA | 1,198,497 | A→C | 8.9% | intergenic (‑260/‑198) | ymfE ← / → lit | e14 prophage; putative inner membrane protein/T4 phage exclusion protein; cell death peptidase, e14 prophage |
| RA | 1,222,274 | T→C | 7.0% | intergenic (+26/+31) | ycgH → / ← ymgD | pseudogene; putative ATP‑binding component of a transport system/uncharacterized protein |
| RA | 1,224,478 | T→C | 5.4% | Q23R (CAG→CGG) | minE ← | cell division topological specificity factor |
| RA | 1,230,550 | A→G | 6.1% | intergenic (‑156/‑217) | hlyE ← / → umuD | hemolysin E/translesion error‑prone DNA polymerase V subunit; RecA‑activated auto‑protease |
| RA | 1,239,380 | G→A | 7.8% | G168R (GGA→AGA) | dadX → | alanine racemase, catabolic, PLP‑binding |
| RA | 1,287,939 | A→G | 8.9% | I229T (ATC→ACC) | purU ← | formyltetrahydrofolate hydrolase |
| RA | 1,292,771 | A→G | 9.2% | V51A (GTT→GCT) | hns ← | global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,319,420 | C→G | 7.3% | Q123H (CAG→CAC) | trpC ← | indole‑3‑glycerolphosphate synthetase and N‑(5‑phosphoribosyl)anthranilate isomerase |
| JC JC | 1,335,762 | IS5 (–) +4 bp | 100% | intergenic (+304/‑66) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,355,673 | A→G | 8.5% | S480P (TCT→CCT) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| RA | 1,363,704 | T→C | 8.7% | L321P (CTG→CCG) | puuC → | gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase |
| RA | 1,397,226 | A→G | 8.7% | intergenic (+134/‑139) | insH1 → / → ynaJ | IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein |
| RA | 1,429,021 | T→A | 6.8% | intergenic (+37/‑28) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,022 | T→A | 6.7% | intergenic (+38/‑27) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,024 | A→C | 6.8% | intergenic (+40/‑25) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,069 | T→A | 7.4% | G7G (GGT→GGA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,072 | A→C | 7.0% | V8V (GTA→GTC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,111 | A→C | 8.9% | T21T (ACA→ACC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,114 | C→T | 7.6% | I22I (ATC→ATT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,126 | A→C | 7.7% | A26A (GCA→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,128 | A→G | 8.0% | K27R (AAA→AGA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,160 | C→G | 7.5% | L38V (CTG→GTG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,164 | C→G | 7.6% | A39G (GCC→GGC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,171 | A→G | 6.7% | E41E (GAA→GAG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,096 | G→A | 8.7% | A350T (GCA→ACA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,445,189 | G→A | 8.0% | A713A (GCG→GCA) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,466,368 | A→G | 9.7% | pseudogene (977/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,482,560 | T→A | 8.2% | I101F (ATC→TTC) | azoR ← | NADH‑azoreductase, FMN‑dependent |
| RA | 1,505,241 | C→T | 8.1% | A280A (GCG→GCA) | ydcO ← | BenE family inner membrane putative transporter |
| RA | 1,512,056 | G→A | 6.6% | G135S (GGC→AGC) | ydcS → | putative ABC transporter periplasmic binding protein |
| RA | 1,512,096 | T→C | 7.8% | L148P (CTG→CCG) | ydcS → | putative ABC transporter periplasmic binding protein |
| RA | 1,534,743 | G→A | 7.9% | A240A (GCG→GCA) | nhoA → | N‑hydroxyarylamine O‑acetyltransferase |
| RA | 1,534,754 | C→T | 7.8% | A244V (GCT→GTT) | nhoA → | N‑hydroxyarylamine O‑acetyltransferase |
| RA | 1,534,890 | G→A | 9.7% | intergenic (+21/+75) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,534,891 | C→A | 9.8% | intergenic (+22/+74) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,540,993 | T→C | 9.1% | H533R (CAT→CGT) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,608,544 | A→G | 7.2% | L160S (TTG→TCG) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,651,744 | C→T | 7.8% | pseudogene (194/1158 nt) | intQ → | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
| RA | 1,662,350 | C→T | 100% | P599S (CCC→TCC) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
| RA | 1,708,652 | G→C | 20.2% | A578A (GCG→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,655 | A→G | 19.7% | E579E (GAA→GAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,844 | C→G | 30.6% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,774,279 | C→T | 7.4% | A164V (GCC→GTC) | ydiB → | quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding |
| RA | 1,779,586 | A→T | 7.7% | intergenic (‑285/‑31) | ydiP ← / → ydiQ | putative DNA‑binding transcriptional regulator/putative electron transfer flavoprotein subunit |
| RA | 1,786,523 | C→T | 10.5% | R197H (CGC→CAC) | ppsA ← | phosphoenolpyruvate synthase |
| RA | 1,811,560 | G→A | 6.8% | A209A (GCG→GCA) | ydjN → | putative transporter |
| RA | 1,814,273 | G→A | 6.8% | G136D (GGT→GAT) | katE → | catalase HPII, heme d‑containing |
| RA | 1,839,078 | G→A | 7.3% | R111H (CGT→CAT) | ynjD → | putative ABC transporter ATPase |
| RA | 1,860,303 | C→T | 7.4% | D344N (GAT→AAT) | ydjL ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 1,882,622 | C→T | 13.3% | F237F (TTC→TTT) | dmlA → | D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase |
| RA | 1,937,048 | T→C | 7.8% | F133L (TTT→CTT) | yebK → | putative DNA‑binding transcriptional regulator |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,982,542 | C→T | 7.5% | intergenic (‑155/+12) | otsB ← / ← araH | trehalose‑6‑phosphate phosphatase, biosynthetic/L‑arabinose ABC transporter permease |
| RA | 1,985,112 | C→G | 5.5% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 1,997,022 | C→T | 6.5% | intergenic (‑190/+40) | sdiA ← / ← yecC | quorum‑sensing transcriptional activator/putative ABC transporter ATPase |
| RA | 2,020,943 | T→C | 7.7% | I286T (ATA→ACA) | fliM → | flagellar motor switching and energizing component |
| RA | 2,027,785 | A→G | 7.7% | L78P (CTG→CCG) | yedQ ← | putative membrane‑anchored diguanylate cyclase |
| RA | 2,041,860 | A→T | 5.1% | I162I (ATA→ATT) | zinT → | zinc and cadmium binding protein, periplasmic |
| RA | 2,068,408 | T→A | 8.3% | pseudogene (12/159 nt) | yoeH ← | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| RA | 2,123,164 | C→T | 11.1% | D453N (GAT→AAT) | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,187,271 | C→T | 6.1% | Y104Y (TAC→TAT) | rcnB → | periplasmic modulator of Ni and Co efflux |
| RA | 2,210,374 | C→T | 8.1% | pseudogene (1275/2001 nt) | yehQ → | pseudogene |
| RA | 2,215,798 | C→T | 6.9% | A227T (GCA→ACA) | yehW ← | putative ABC transporter permease |
| RA | 2,281,441 | A→G | 9.7% | G270G (GGA→GGG) | yejH → | putative ATP‑dependent DNA or RNA helicase |
| RA | 2,286,311 | C→G | 7.3% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 7.6% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,304,649 | C→T | 28.6% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,313,153 | G→A | 5.4% | noncoding (70/93 nt) | micF → | sRNA antisense regulator affecting ompF expression, Hfq‑dependent |
| RA | 2,316,576 | G→A | 5.8% | V134I (GTT→ATT) | rcsB → | response regulator in two‑component regulatory system with RcsC and YojN |
| RA | 2,316,590 | G→T | 6.2% | L138F (TTG→TTT) | rcsB → | response regulator in two‑component regulatory system with RcsC and YojN |
| RA | 2,336,325 | C→T | 5.2% | R107H (CGT→CAT) | yfaA ← | DUF2138 family protein, putative host defense protein |
| RA | 2,339,310 | G→A | 7.0% | V37V (GTC→GTT) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
| RA | 2,437,272 | T→C | 8.5% | I194V (ATC→GTC) | pdxB ← | erythronate‑4‑phosphate dehydrogenase |
| RA | 2,443,006 | G→T | 9.5% | V415L (GTG→TTG) | mnmC → | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,459,658 | T→C | 5.4% | N271S (AAC→AGC) | fadI ← | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit |
| RA | 2,533,515 | G→T | 5.0% | intergenic (+135/‑249) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,543,413 | A→C | 7.3% | L39R (CTG→CGG) | cysP ← | thiosulfate‑binding protein |
| RA | 2,577,336 | C→T | 6.4% | V348I (GTA→ATA) | maeB ← | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| RA | 2,629,219 | G→A | 5.8% | intergenic (‑281/‑71) | yfgF ← / → yfgG | cyclic‑di‑GMP phosphodiesterase, anaerobic/uncharacterized protein |
| RA | 2,656,933 | A→G | 9.5% | C51R (TGC→CGC) | fdx ← | [2Fe‑2S] ferredoxin |
| RA | 2,669,513 | C→T | 7.3% | P161L (CCG→CTG) | hcaE → | 3‑phenylpropionate dioxygenase, large (alpha) subunit |
| RA | 2,684,083 | C→T | 6.4% | intergenic (+27/+171) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,085 | A→C | 6.4% | intergenic (+29/+169) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,086 | A→G | 6.4% | intergenic (+30/+168) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,691,173 | A→T | 6.3% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,714,238 | G→A | 6.6% | intergenic (+8/+201) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,714,244 | T→C | 7.1% | intergenic (+14/+195) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,714,255 | T→C | 8.0% | intergenic (+25/+184) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,742,613 | T→A | 5.6% | T77T (ACT→ACA) | yfiN → | putative membrane‑anchored diguanylate cyclase |
| RA | 2,757,847 | C→A | 5.0% | A252S (GCA→TCA) | yfjH ← | CP4‑57 prophage; uncharacterized protein |
| RA | 2,818,392 | A→T | 8.6% | intergenic (‑118/+81) | argY ← / ← argV | tRNA‑Arg/tRNA‑Arg |
| RA | 2,818,393 | A→T | 7.5% | intergenic (‑119/+80) | argY ← / ← argV | tRNA‑Arg/tRNA‑Arg |
| RA | 2,849,674 | C→G | 6.0% | C59S (TGC→TCC) | hycB ← | hydrogenase 3, Fe‑S subunit |
| RA | 2,860,614 | A→T | 6.8% | D207E (GAT→GAA) | ygbI ← | DeoR family putative transcriptional regulator |
| RA | 2,862,763 | T→C | 6.5% | H143H (CAT→CAC) | ygbK → | FliA‑regulated DUF1537 family protein |
| RA | 2,892,345 | A→G | 7.1% | E44E (GAA→GAG) | queD → | 6‑pyruvoyl tetrahydrobiopterin synthase (PTPS) |
| RA | 2,918,017 | C→T | 8.5% | intergenic (+204/+28) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,020 | A→C | 8.0% | intergenic (+207/+25) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,961,811 | C→A | 6.9% | G206G (GGG→GGT) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 3,015,399 | Δ1 bp | 5.7% | coding (240/579 nt) | mocA → | CTP:molybdopterin cytidylyltransferase |
| RA | 3,041,862 | A→G | 6.6% | N184D (AAC→GAC) | ygfZ → | iron‑sulfur cluster repair protein, plumbagin resistance |
| RA | 3,122,117 | G→A | 8.5% | T563T (ACC→ACT) | glcB ← | malate synthase G |
| RA | 3,146,922 | A→G | 5.0% | pseudogene (351/417 nt) | yghX ← | pseudogene, dienlactone hydrolase family |
| RA | 3,148,217 | C→T | 7.5% | Y107Y (TAC→TAT) | gpr → | L‑glyceraldehyde 3‑phosphate reductase |
| RA | 3,156,590 | C→A | 12.0% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 12.1% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,161,653 | G→A | 8.5% | R339R (CGC→CGT) | ftsP ← | septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
| RA | 3,185,981 | T→C | 6.0% | intergenic (+16/‑80) | ygiL → / → yqiG | putative fimbrial‑like adhesin protein/pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| RA | 3,185,982 | T→G | 6.1% | intergenic (+17/‑79) | ygiL → / → yqiG | putative fimbrial‑like adhesin protein/pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| RA | 3,236,716 | C→T | 6.0% | N59N (AAC→AAT) | ygjQ → | DUF218 superfamily protein |
| RA | 3,260,724 | G→A | 5.8% | D565D (GAC→GAT) | tdcE ← | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| RA | 3,270,214 | T→C | 9.0% | intergenic (+612/+2) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,239 | G→C | 10.7% | noncoding (354/377 nt) | rnpB ← | RNase P, M1 RNA component |
| RA | 3,324,952 | A→G | 5.9% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 5.8% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 6.1% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,345,295 | A→G | 6.2% | K193K (AAA→AAG) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| RA | 3,390,718 | C→A | 7.0% | Q437H (CAG→CAT) | tldD ← | putative peptidase |
| RA | 3,414,992 | G→A | 6.0% | D377N (GAT→AAT) | acrE → | cytoplasmic membrane lipoprotein |
| RA | 3,434,980 | C→T | 5.0% | T256M (ACG→ATG) | fmt → | 10‑formyltetrahydrofolate:L‑methionyl‑tRNA(fMet) N‑formyltransferase |
| RA | 3,439,588 | G→C | 7.4% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 7.6% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,458,416 | T→A | 7.1% | I26I (ATT→ATA) | gspE → | general secretory pathway component, cryptic |
| RA | 3,458,418 | T→A | 6.9% | I27N (ATT→AAT) | gspE → | general secretory pathway component, cryptic |
| RA | 3,458,420 | T→A | 7.2% | Y28N (TAT→AAT) | gspE → | general secretory pathway component, cryptic |
| RA | 3,538,814 | C→T | 7.4% | T477M (ACG→ATG) | yhgF → | putative transcriptional accessory protein |
| RA | 3,545,220 | G→A | 5.8% | P113P (CCG→CCA) | gntX → | DNA catabolic protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,578,610 | C→A | 5.9% | K39N (AAG→AAT) | gntR ← | d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,581,737 | T→A | 5.0% | intergenic (+111/‑126) | yhhY → / → yhhZ | aminoacyl nucleotide detoxifying acetyltransferase/putative Hcp1 family polymorphic toxin protein; putative colicin‑like DNase/tRNase activity |
| RA | 3,657,599 | T→A | 5.1% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 5.1% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 5.1% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,676,371 | C→T | 7.6% | A660A (GCG→GCA) | yhjG ← | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,707,879 | A→G | 7.9% | intergenic (‑174/+737) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,429 | T→C | 5.9% | intergenic (‑724/+187) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,717,410 | A→C | 6.1% | Q34P (CAA→CCA) | ghrB → | glyoxylate/hydroxypyruvate reductase B |
| RA | 3,743,058 | T→A | 7.2% | V109E (GTG→GAG) | yiaK → | 2,3‑diketo‑L‑gulonate reductase, NADH‑dependent |
| RA | 3,755,946 | T→C | 6.0% | N189S (AAC→AGC) | aldB ← | aldehyde dehydrogenase B |
| RA | 3,756,563 | A→G | 6.8% | intergenic (‑52/+113) | aldB ← / ← yiaY | aldehyde dehydrogenase B/L‑threonine dehydrogenase |
| RA | 3,756,564 | T→A | 7.0% | intergenic (‑53/+112) | aldB ← / ← yiaY | aldehyde dehydrogenase B/L‑threonine dehydrogenase |
| RA | 3,756,565 | C→T | 7.0% | intergenic (‑54/+111) | aldB ← / ← yiaY | aldehyde dehydrogenase B/L‑threonine dehydrogenase |
| RA | 3,781,051 | C→G | 12.5% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,833,709 | A→G | 6.2% | F277L (TTT→CTT) | yicI ← | putative alpha‑glucosidase |
| RA | 3,884,401 | G→A | 5.0% | M22I (ATG→ATA) | rpmH → | 50S ribosomal subunit protein L34 |
| RA | 3,929,682 | A→C | 5.1% | L471R (CTG→CGG) | ravA ← | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
| RA | 3,936,333 | T→C | 8.0% | V19A (GTC→GCC) | rbsB → | D‑ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor |
| RA | 3,959,515 | T→A | 8.4% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,991,256 | A→T | 6.7% | Y35F (TAC→TTC) | cyaA → | adenylate cyclase |
| RA | 4,027,595 | C→T | 6.3% | intergenic (+367/+14) | fre → / ← fadA | NAD(P)H‑flavin reductase/3‑ketoacyl‑CoA thiolase (thiolase I) |
| RA | 4,040,750 | G→T | 7.1% | intergenic (+114/+156) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,040,752 | A→C | 9.0% | intergenic (+116/+154) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,061,199 | A→G | 6.0% | Q12R (CAA→CGA) | yihM → | putative sugar phosphate isomerase |
| RA | 4,074,135 | G→A | 6.7% | V133M (GTG→ATG) | yihV → | 6‑deoxy‑6‑sulphofructose kinase |
| RA | 4,085,828 | G→A | 8.7% | intergenic (‑6/‑188) | fdoG ← / → fdhD | formate dehydrogenase‑O, large subunit/formate dehydrogenase formation protein |
| RA | 4,141,379 | G→C | 6.5% | L281L (CTC→CTG) ‡ | frwA ← | putative PTS enzyme: Hpr, enzyme I and II components |
| RA | 4,141,380 | A→T | 5.9% | L281H (CTC→CAC) ‡ | frwA ← | putative PTS enzyme: Hpr, enzyme I and II components |
| RA | 4,141,381 | G→C | 6.6% | L281V (CTC→GTC) ‡ | frwA ← | putative PTS enzyme: Hpr, enzyme I and II components |
| RA | 4,148,853 | C→T | 6.3% | P471P (CCG→CCA) | eptC ← | LPS heptose I phosphoethanolamine transferase |
| RA | 4,175,146 | Δ1 bp | 100% | intergenic (‑120/‑242) | coaA ← / → thrU | pantothenate kinase/tRNA‑Thr |
| RA | 4,182,791 | A→G | 78.9% | D516G (GAC→GGC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,183,227 | A→G | 6.1% | V661V (GTA→GTG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,260,888 | C→T | 9.0% | A97V (GCC→GTC) | yjbM → | uncharacterized protein |
| RA | 4,272,045 | C→T | 7.4% | P609P (CCG→CCA) | uvrA ← | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| RA | 4,296,060 | C→T | 39.7% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,299,887 | T→C | 5.6% | M382V (ATG→GTG) | mdtP ← | outer membrane factor of efflux pump |
| RA | 4,385,206 | T→A | 5.7% | P456P (CCT→CCA) | yjeM → | putative transporter |
| RA | 4,385,207 | G→C | 5.6% | V457L (GTG→CTG) ‡ | yjeM → | putative transporter |
| RA | 4,385,208 | T→A | 5.6% | V457E (GTG→GAG) ‡ | yjeM → | putative transporter |
| RA | 4,396,233 | C→T | 6.3% | R57C (CGC→TGC) | amiB → | N‑acetylmuramoyl‑l‑alanine amidase II |
| RA | 4,404,284 | C→A | 7.7% | P329T (CCG→ACG) | hflC → | HflB protease modulator specific for phage lambda cII repressor |
| RA | 4,437,019 | A→G | 6.2% | K89E (AAA→GAA) | cysQ → | 3'(2'),5'‑bisphosphate nucleotidase |
| RA | 4,446,459 | C→T | 7.3% | T783M (ACG→ATG) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,455,369 | C→T | 6.5% | D81N (GAT→AAT) | fbp ← | fructose‑1,6‑bisphosphatase I |
| RA | 4,467,969 | G→T | 6.6% | T115T (ACG→ACT) | mgtA → | magnesium transporter |
| RA | 4,483,693 | G→A | 6.9% | H49Y (CAT→TAT) | valS ← | valyl‑tRNA synthetase |
| RA | 4,488,424 | G→T | 6.9% | intergenic (+24/+137) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,488,425 | A→T | 6.9% | intergenic (+25/+136) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,488,426 | A→T | 6.8% | intergenic (+26/+135) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,488,427 | A→C | 6.9% | intergenic (+27/+134) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,537,646 | G→A | 5.1% | intergenic (‑52/+13) | nanS ← / ← nanM | 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase |
| RA | 4,585,907 | C→T | 5.6% | P285P (CCG→CCA) | hsdR ← | endonuclease R Type I restriction enzyme |
| RA | 4,590,647 | G→C | 6.4% | Y211* (TAC→TAG) | yjiY ← | putative transporter |
| RA | 4,620,090 | C→T | 6.9% | T163I (ACC→ATC) | deoB → | phosphopentomutase |
| RA | 4,620,095 | A→T | 6.8% | K165* (AAG→TAG) ‡ | deoB → | phosphopentomutase |
| RA | 4,620,096 | A→T | 7.0% | K165M (AAG→ATG) ‡ | deoB → | phosphopentomutase |
| RA | 4,620,101 | A→G | 6.5% | I167V (ATT→GTT) | deoB → | phosphopentomutase |
| RA | 4,620,676 | C→T | 6.0% | D358D (GAC→GAT) | deoB → | phosphopentomutase |
| RA | 4,635,457 | T→C | 5.1% | intergenic (‑147/‑64) | rob ← / → creA | right oriC‑binding transcriptional activator, AraC family/putative periplasmic protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 131590 | 134213 | 2624 | 22 [18] | [18] 19 | acnB | acnB |
| * | * | ÷ | NC_000913 | 3423762–3424232 | 3424545–3424240 | 9–784 | 19 [18] | [18] 19 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 15310 = | 52 (0.960) | 3 (0.060) | 3/246 | NT | 5.8% | intergenic (+12/‑135) | dnaJ/insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| ? | NC_000913 | 15328 = | 48 (0.950) | intergenic (+30/‑117) | dnaJ/insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase | |||||
| * | ? | NC_000913 | 62126 = | 69 (1.280) | 4 (0.080) | 4/250 | NT | 6.1% | coding (1139/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
| ? | NC_000913 | 62151 = | 57 (1.100) | coding (1114/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase | |||||
| * | ? | NC_000913 | = 164545 | 57 (1.050) | 5 (0.090) | 5/262 | NT | 8.1% | intergenic (+11/‑185) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| ? | NC_000913 | = 164568 | 57 (1.050) | intergenic (+34/‑162) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase | |||||
| * | ? | NC_000913 | = 360501 | 48 (0.890) | 3 (0.060) | 3/248 | NT | 6.2% | coding (510/1155 nt) | cynX | putative cyanate transporter |
| ? | NC_000913 | = 360508 | 46 (0.900) | coding (517/1155 nt) | cynX | putative cyanate transporter | |||||
| * | ? | NC_000913 | 514572 = | 52 (0.960) | 3 (0.060) | 3/254 | NT | 5.6% | coding (288/459 nt) | ybbJ | inner membrane protein; stimulator of the QmcA suppressor of ftsH‑htpX |
| ? | NC_000913 | 514590 = | 50 (0.950) | coding (270/459 nt) | ybbJ | inner membrane protein; stimulator of the QmcA suppressor of ftsH‑htpX | |||||
| * | ? | NC_000913 | = 543206 | NA (NA) | 3 (0.060) | 3/246 | NT | NA | intergenic (+173/+55) | glxK/allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| ? | NC_000913 | = 543210 | NA (NA) | intergenic (+177/+51) | glxK/allE | glycerate kinase II/S‑ureidoglycine aminohydrolase | |||||
| * | ? | NC_000913 | 937227 = | NA (NA) | 3 (0.060) | 3/246 | NT | NA | noncoding (4/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 937261 = | NA (NA) | intergenic (+48/‑111) | ftsK/lolA | DNA translocase at septal ring sorting daughter chromsomes/lipoprotein chaperone | |||||
| * | ? | NC_000913 | 1207790 = | 15 (0.280) | 25 (0.530) | 22/230 | NT | 58.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 22 (0.460) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 18 (0.330) | 31 (0.650) | 29/230 | NT | 62.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 22 (0.460) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1259097 | 50 (0.920) | 3 (0.060) | 3/240 | NT | 6.0% | intergenic (+28/+27) | ychH/dauA | DUF2583 family putative inner membrane protein/C4‑dicarboxylic acid transporter |
| ? | NC_000913 | = 1259103 | 49 (0.990) | intergenic (+34/+21) | ychH/dauA | DUF2583 family putative inner membrane protein/C4‑dicarboxylic acid transporter | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 62 (1.180) | 50/254 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 6 (0.170) +44 bp |
3/174 | NT | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1497378 = | 50 (0.920) | 4 (0.080) | 3/248 | NT | 8.4% | coding (523/1656 nt) | opgD | OPG biosynthetic periplasmic protein |
| ? | NC_000913 | 1497422 = | 40 (0.780) | coding (567/1656 nt) | opgD | OPG biosynthetic periplasmic protein | |||||
| * | ? | NC_000913 | 1522008 = | 38 (0.700) | 4 (0.080) | 4/250 | NT | 10.9% | coding (1058/2103 nt) | yncD | putative iron outer membrane transporter |
| ? | NC_000913 | 1522036 = | 29 (0.560) | coding (1030/2103 nt) | yncD | putative iron outer membrane transporter | |||||
| * | ? | NC_000913 | 1874671 = | 41 (0.760) | 3 (0.060) | 3/250 | NT | 7.3% | coding (320/447 nt) | yeaL | UPF0756 family putative inner membrane protein |
| ? | NC_000913 | 1874701 = | 37 (0.720) | coding (350/447 nt) | yeaL | UPF0756 family putative inner membrane protein | |||||
| * | ? | NC_000913 | 2477002 = | 60 (1.110) | 4 (0.080) | 3/238 | NT | 7.8% | coding (628/936 nt) | dsdC | dsd operon activator; autorepressor |
| ? | NC_000913 | 2477035 = | 40 (0.810) | coding (595/936 nt) | dsdC | dsd operon activator; autorepressor | |||||
| * | ? | NC_000913 | = 2568148 | 49 (0.910) | 4 (0.080) | 4/246 | NT | 8.6% | noncoding (10/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 2568211 | 39 (0.770) | noncoding (73/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | = 2644346 | 46 (0.850) | 3 (0.060) | 3/250 | NT | 6.4% | intergenic (‑63/+87) | rlmN/ndk | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent/multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase |
| ? | NC_000913 | = 2644366 | 44 (0.850) | intergenic (‑83/+67) | rlmN/ndk | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent/multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase | |||||
| * | ? | NC_000913 | = 2690411 | 42 (0.780) | 3 (0.060) | 3/246 | NT | 7.4% | coding (688/1428 nt) | glrK | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
| ? | NC_000913 | = 2690416 | 36 (0.710) | coding (683/1428 nt) | glrK | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR | |||||
| * | ? | NC_000913 | 2700550 = | 55 (1.020) | 3 (0.060) | 3/224 | NT | 6.3% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913 | 2700601 = | 43 (0.930) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 4 (0.080) | 3/250 | NT | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2827680 = | 44 (0.810) | 3 (0.060) | 3/254 | NT | 6.8% | coding (319/372 nt) | srlB | glucitol/sorbitol‑specific enzyme IIA component of PTS |
| ? | NC_000913 | 2827700 = | 39 (0.740) | coding (339/372 nt) | srlB | glucitol/sorbitol‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | = 2918309 | 58 (1.070) | 4 (0.080) | 4/248 | NT | 6.7% | coding (1077/1341 nt) | gudD | D‑glucarate dehydratase 1 |
| ? | NC_000913 | = 2918328 | 57 (1.110) | coding (1058/1341 nt) | gudD | D‑glucarate dehydratase 1 | |||||
| * | ? | NC_000913 | = 3099660 | 58 (1.070) | 3 (0.060) | 3/248 | NT | 5.0% | intergenic (‑95/+22) | yggM/ansB | DUF1202 family putative secreted protein/periplasmic L‑asparaginase 2 |
| ? | NC_000913 | = 3099667 | 59 (1.150) | intergenic (‑102/+15) | yggM/ansB | DUF1202 family putative secreted protein/periplasmic L‑asparaginase 2 | |||||
| * | ? | NC_000913 | = 3270208 | 36 (0.670) | 4 (0.120) +49 bp |
4/164 | NT | 15.1% | intergenic (+606/+8) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913 | = 3270244 | 36 (0.670) | noncoding (349/377 nt) | rnpB | RNase P, M1 RNA component | |||||
| * | ? | NC_000913 | = 3295515 | 52 (0.960) | 3 (0.060) | 3/248 | NT | 5.9% | coding (122/396 nt) | yraN | UPF0102 family protein |
| ? | NC_000913 | = 3295532 | 47 (0.920) | coding (139/396 nt) | yraN | UPF0102 family protein | |||||
| * | ? | NC_000913 | 3355369 = | 60 (1.110) | 3 (0.060) | 3/248 | NT | 5.1% | coding (645/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | NC_000913 | 3355403 = | 55 (1.070) | coding (679/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | NC_000913 | = 3395194 | 36 (0.670) | 4 (0.080) | 4/254 | NT | 9.4% | coding (1065/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein |
| ? | NC_000913 | = 3395213 | 42 (0.800) | coding (1046/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein | |||||
| * | ? | NC_000913 | 3487010 = | 56 (1.040) | 3 (0.060) | 3/248 | NT | 5.6% | coding (220/2103 nt) | yhfK | putative transporter, FUSC superfamily inner membrane protein |
| ? | NC_000913 | 3487051 = | 49 (0.960) | coding (261/2103 nt) | yhfK | putative transporter, FUSC superfamily inner membrane protein | |||||
| * | ? | NC_000913 | = 3537321 | 50 (0.920) | 3 (0.060) | 3/244 | NT | 5.8% | intergenic (+33/‑64) | greB/yhgF | transcript cleavage factor/putative transcriptional accessory protein |
| ? | NC_000913 | = 3537325 | 51 (1.010) | intergenic (+37/‑60) | greB/yhgF | transcript cleavage factor/putative transcriptional accessory protein | |||||
| * | ? | NC_000913 | = 3542317 | 63 (1.160) | 4 (0.080) | 4/250 | NT | 6.1% | coding (1911/2322 nt) | feoB | ferrous iron transporter protein B and GTP‑binding protein; membrane protein |
| ? | NC_000913 | = 3542340 | 64 (1.240) | coding (1934/2322 nt) | feoB | ferrous iron transporter protein B and GTP‑binding protein; membrane protein | |||||
| * | ? | NC_000913 | 3613251 = | 52 (0.960) | 3 (0.060) | 3/262 | NT | 5.3% | coding (283/588 nt) | acpT | 4'‑phosphopantetheinyl transferase |
| ? | NC_000913 | 3613287 = | 55 (1.020) | coding (319/588 nt) | acpT | 4'‑phosphopantetheinyl transferase | |||||
| * | ? | NC_000913 | = 3798233 | 81 (1.500) | 5 (0.100) | 5/236 | NT | 6.3% | intergenic (+26/+6) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| ? | NC_000913 | = 3798235 | 75 (1.540) | intergenic (+28/+4) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis | |||||
| * | ? | NC_000913 | = 4040683 | 67 (1.240) | 11 (0.210) | 7/258 | NT | 15.5% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 54 (1.010) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | 4189470 = | 61 (1.130) | 3 (0.060) | 3/250 | NT | 5.2% | coding (4121/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| ? | NC_000913 | 4189499 = | 51 (0.990) | coding (4150/4224 nt) | rpoC | RNA polymerase, beta prime subunit | |||||
| * | ? | NC_000913 | 4240741 = | 86 (1.590) | 4 (0.080) | 4/242 | NT | 5.1% | intergenic (+6/+38) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter |
| ? | NC_000913 | 4240769 = | 71 (1.420) | intergenic (+34/+10) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter | |||||
| * | ? | NC_000913 | 4312475 = | 49 (0.910) | 3 (0.060) | 3/252 | NT | 6.0% | coding (517/891 nt) | alsR | d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| ? | NC_000913 | 4312574 = | 47 (0.900) | coding (418/891 nt) | alsR | d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR | |||||
| * | ? | NC_000913 | 4542682 = | 41 (0.760) | 11 (0.220) | 11/244 | NT | 20.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 49 (0.970) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 40 (0.740) | 17 (0.340) | 17/244 | NT | 28.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 49 (0.970) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||