mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 3933414 | 341 (1.080) | 4 (0.020) +27 bp |
4/198 | NT | 1.6% | coding (822/822 nt) | EO946_RS20235 | SDR family oxidoreductase |
| ? | NZ_CP034943 | 3934434 = | 277 (0.880) | intergenic (+1020/+1) | EO946_RS20235/EO946_RS20245 | SDR family oxidoreductase/TetR/AcrR family transcriptional regulator | |||||
| * | ? | NZ_CP034943 | 3592725 = | 240 (0.760) | 5 (0.020) | 3/232 | NT | 2.2% | coding (424/702 nt) | urtE | urea ABC transporter ATP‑binding subunit UrtE |
| ? | NZ_CP034943 | = 3592721 | 233 (0.810) | coding (428/702 nt) | urtE | urea ABC transporter ATP‑binding subunit UrtE | |||||
| * | ? | NZ_CP034943 | = 3426096 | 315 (1.000) | 3 (0.010) +ACGGAACGGC |
3/232 | NT | 1.1% | intergenic (‑120/+217) | ctpB/ftsX | carboxy‑terminal processing protease CtpB/permease‑like cell division protein FtsX |
| ? | NZ_CP034943 | 3426305 = | 290 (0.920) | intergenic (‑329/+8) | ctpB/ftsX | carboxy‑terminal processing protease CtpB/permease‑like cell division protein FtsX | |||||
| * | ? | NZ_CP034943 | = 2936101 | 219 (0.700) | 8 (0.030) | 4/246 | NT | 3.3% | coding (312/783 nt) | EO946_RS15115 | ABC transporter ATP‑binding protein |
| ? | NZ_CP034943 | 2936272 = | 253 (0.820) | coding (483/783 nt) | EO946_RS15115 | ABC transporter ATP‑binding protein | |||||
| * | ? | NZ_CP034943 | = 2838370 | 261 (0.830) | 4 (0.010) | 4/252 | NT | 1.5% | intergenic (+55/+226) | rpsD/tyrS | 30S ribosomal protein S4/tyrosine‑‑tRNA ligase |
| ? | NZ_CP034943 | 2838378 = | 256 (0.810) | intergenic (+63/+218) | rpsD/tyrS | 30S ribosomal protein S4/tyrosine‑‑tRNA ligase | |||||
| * | ? | NZ_CP034943 | 2557054 = | 358 (1.140) | 4 (0.010) | 4/226 | NT | 1.2% | coding (180/756 nt) | EO946_RS13225 | metal‑binding protein ZinT |
| ? | NZ_CP034943 | = 2557050 | 324 (1.150) | coding (184/756 nt) | EO946_RS13225 | metal‑binding protein ZinT | |||||
| * | ? | NZ_CP034943 | 2526375 = | 283 (0.900) | 3 (0.010) | 3/252 | NT | 0.85% | intergenic (‑96/‑100) | nucB/sigK | sporulation‑specific Dnase NucB/RNA polymerase sporulation sigma factor SigK |
| ? | NZ_CP034943 | 3751590 = | 415 (1.320) | coding (64/600 nt) | EO946_RS19305 | DsbA family protein | |||||
| * | ? | NZ_CP034943 | = 1550631 | 265 (0.840) | 6 (0.020) +CCGTCG |
3/240 | NT | 2.3% | intergenic (+8/‑126) | pbpB/EO946_RS08110 | penicillin‑binding protein 2B/stage V sporulation protein D |
| ? | NZ_CP034943 | 1550655 = | 261 (0.830) | intergenic (+32/‑102) | pbpB/EO946_RS08110 | penicillin‑binding protein 2B/stage V sporulation protein D | |||||
| * | ? | NZ_CP034943 | = 1460676 | 438 (1.390) | 3 (0.010) | 3/242 | NT | 0.91% | coding (718/1020 nt) | EO946_RS07640 | MoeB/ThiF family adenylyltransferase |
| ? | NZ_CP034943 | 1461302 = | 231 (0.770) | coding (307/1293 nt) | EO946_RS07645 | molybdopterin molybdotransferase MoeA | |||||
| * | ? | NZ_CP034943 | 166199 = | 518 (1.650) | 3 (0.010) +A |
3/244 | NT | 0.60% | intergenic (+4/‑168) | EO946_RS00985/EO946_RS00990 | tRNA‑Ala/16S ribosomal RNA |
| ? | NZ_CP034943 | = 171201 | 499 (1.630) | intergenic (+18/‑167) | rrf/EO946_RS01005 | 5S ribosomal RNA/16S ribosomal RNA | |||||