mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_012967 | 2,016,091 | 0 | T | A | 47.4% | 0.6 / 12.5 | 19 | intergenic (‑123/+56) | yeeE/plaP | thiosulfate utilization transporter TsuA/YeeE/putrescine/proton symporter PlaP |
| * | NC_012967 | 375,729 | 0 | T | C | 34.2% | 146.9 / 52.1 | 118 | L219P (CTG→CCG) | aroM | AroM family protein |
| * | NC_012967 | 1,004,585 | 0 | T | G | 33.3% | 70.0 / 18.9 | 54 | intergenic (‑511/+91) | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
| * | NC_012967 | 2,237,486 | 0 | G | A | 24.1% | 116.6 / 17.0 | 58 | intergenic (+11/+92) | ECB_RS11165/yejO | tRNA‑Pro/autotransporter YejO |
| * | NC_012967 | 4,402,594 | 0 | A | G | 22.4% | 279.8 / 16.6 | 118 | intergenic (+53/+76) | ulaF/yjfY | L‑ribulose‑5‑phosphate 4‑epimerase UlaF/DUF1471 family protein YjfY |
| * | NC_012967 | 3,174,256 | 0 | T | G | 21.1% | 234.9 / 12.0 | 109 | T175P (ACC→CCC) | ygjV | YgjV family protein |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 3482676 = | 94 (0.430) | 76 (0.380) | 51/130 | 3.2 | 53.0% | coding (992/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
| ? | NC_012967 | = 3482700 | 49 (0.240) | coding (1016/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||
| * | ? | NC_012967 | 2066637 = | 158 (0.720) | 33 (0.180) +GTTGGCGCACAAT |
12/116 | 10.1 | 17.9% | intergenic (‑34/+59) | wcaA/wzc | colanic acid biosynthesis glycosyltransferase WcaA/tyrosine‑protein kinase Wzc |
| ? | NC_012967 | 2783338 = | 213 (0.970) | intergenic (+67/+81) | ygcP/ygcQ | glycerol‑3‑phosphate responsive antiterminator/electron transfer flavoprotein subunit alpha/FixB family protein | |||||
| * | ? | NC_012967 | 2066637 = | 158 (0.720) | 32 (0.180) +GTTGGCGCACAA |
12/118 | 10.3 | 19.6% | intergenic (‑34/+59) | wcaA/wzc | colanic acid biosynthesis glycosyltransferase WcaA/tyrosine‑protein kinase Wzc |
| ? | NC_012967 | = 4208344 | 158 (0.720) | intergenic (+51/+40) | yjbB/pepE | Na/Pi cotransporter family protein/dipeptidase PepE | |||||
| * | ? | NC_012967 | 114280 = | 187 (0.850) | 45 (0.270) +ACCGGCTTGGGCGTTA |
7/110 | 11.9 | 27.7% | intergenic (+43/+173) | mutT/yacG | 8‑oxo‑dGTP diphosphatase MutT/DNA gyrase inhibitor YacG |
| ? | NC_012967 | = 4275216 | 117 (0.530) | intergenic (+489/+42) | gltP/yjcO | glutamate/aspartate:proton symporter GltP/Sel1 family TPR‑like repeat protein YjcO | |||||
| * | ? | NC_012967 | 4005890 = | 164 (0.750) | 52 (0.310) +ACCGGCTTGGGCGTTA |
6/110 | 12.4 | 32.4% | intergenic (+191/+92) | fre/fadA | NAD(P)H‑flavin reductase/acetyl‑CoA C‑acyltransferase FadA |
| ? | NC_012967 | = 4275216 | 117 (0.530) | intergenic (+489/+42) | gltP/yjcO | glutamate/aspartate:proton symporter GltP/Sel1 family TPR‑like repeat protein YjcO | |||||
| * | ? | NC_012967 | 2928192 = | 169 (0.770) | 52 (0.310) +ACCGGCTTGGGCGTTA |
6/110 | 12.4 | 32.0% | intergenic (+146/+50) | ygfZ/yqfA | tRNA‑modifying protein YgfZ/hemolysin III family protein |
| ? | NC_012967 | = 4275216 | 117 (0.530) | intergenic (+489/+42) | gltP/yjcO | glutamate/aspartate:proton symporter GltP/Sel1 family TPR‑like repeat protein YjcO | |||||
| * | ? | NC_012967 | = 2294036 | 146 (0.660) | 52 (0.310) +ACCGGCTTGGGCGTTA |
6/110 | 12.4 | 33.9% | intergenic (+186/+22) | nrdA/ECB_RS25995 | ribonucleoside‑diphosphate reductase subunit alpha/protein YoaM |
| ? | NC_012967 | = 4275216 | 117 (0.530) | intergenic (+489/+42) | gltP/yjcO | glutamate/aspartate:proton symporter GltP/Sel1 family TPR‑like repeat protein YjcO | |||||
| * | ? | NC_012967 | = 2374606 | 130 (0.590) | 47 (0.270) +CCGGCTTGGGCGTTA |
6/112 | 12.5 | 32.6% | intergenic (‑251/+8) | cvpA/dedD | colicin V production protein/cell division protein DedD |
| ? | NC_012967 | = 4275216 | 117 (0.530) | intergenic (+489/+42) | gltP/yjcO | glutamate/aspartate:proton symporter GltP/Sel1 family TPR‑like repeat protein YjcO | |||||
| * | ? | NC_012967 | 880528 = | 107 (0.490) | 5 (0.030) | 5/114 | 13.2 | 5.0% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 106 (0.600) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| * | ? | NC_012967 | 2703030 = | 132 (0.600) | 43 (0.250) +ACCGGCTTGGGCGTTA |
4/110 | 13.6 | 30.9% | intergenic (+154/‑138) | proX/ECB_RS13380 | glycine betaine/L‑proline ABC transporter substrate‑binding protein ProX/MFS transporter |
| ? | NC_012967 | = 4275216 | 117 (0.530) | intergenic (+489/+42) | gltP/yjcO | glutamate/aspartate:proton symporter GltP/Sel1 family TPR‑like repeat protein YjcO | |||||