mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 41,753 | T→C | S207S (AGT→AGC) | tpsB2 → | two‑partner secretion system transporter TpsB2 |
| RA | 41,756 | G→A | R208R (CGG→CGA) | tpsB2 → | two‑partner secretion system transporter TpsB2 |
| RA | 72,440 | T→C | K132E (AAG→GAG) | PA14_RS00315 ← | hypothetical protein |
| RA | 96,307 | A→C | pseudogene (327/723 nt) | tagH ← | type VI secretion system‑associated FHA domain protein TagH |
| RA | 96,350 | T→C | pseudogene (284/723 nt) | tagH ← | type VI secretion system‑associated FHA domain protein TagH |
| RA | 96,353 | T→G | pseudogene (281/723 nt) | tagH ← | type VI secretion system‑associated FHA domain protein TagH |
| RA | 96,356 | A→C | pseudogene (278/723 nt) | tagH ← | type VI secretion system‑associated FHA domain protein TagH |
| RA | 96,360 | T→C | pseudogene (274/723 nt) | tagH ← | type VI secretion system‑associated FHA domain protein TagH |
| RA | 96,391 | A→G | pseudogene (243/723 nt) | tagH ← | type VI secretion system‑associated FHA domain protein TagH |
| RA | 96,393 | A→C | pseudogene (241/723 nt) | tagH ← | type VI secretion system‑associated FHA domain protein TagH |
| RA | 96,401 | G→C | pseudogene (233/723 nt) | tagH ← | type VI secretion system‑associated FHA domain protein TagH |
| RA | 96,406 | T→G | pseudogene (228/723 nt) | tagH ← | type VI secretion system‑associated FHA domain protein TagH |
| RA | 96,408 | G→C | pseudogene (226/723 nt) | tagH ← | type VI secretion system‑associated FHA domain protein TagH |
| RA | 96,452 | +A | pseudogene (182/723 nt) | tagH ← | type VI secretion system‑associated FHA domain protein TagH |
| JC | 96,621 | (GGCTGT)12→13 | pseudogene (13/723 nt) pseudogene (789/894 nt) |
tagH ← tagH ← |
type VI secretion system‑associated FHA domain protein TagH type VI secretion system‑associated FHA domain protein TagH |
| RA | 151,966 | A→G | intergenic (‑743/‑415) | guaD ← / → PA14_RS00690 | guanine deaminase/ABC transporter ATP‑binding protein |
| RA | 155,993 | Δ1 bp | coding (922/981 nt) | PA14_RS00700 → | ABC transporter permease |
| RA | 208,430 | T→G | intergenic (‑36/+52) | atsA ← / ← PA14_RS00940 | arylsulfatase AtsA/ABC transporter ATP‑binding protein |
| RA | 208,433 | G→C | intergenic (‑39/+49) | atsA ← / ← PA14_RS00940 | arylsulfatase AtsA/ABC transporter ATP‑binding protein |
| RA | 480,880 | T→C | A204A (GCA→GCG) | PA14_RS02220 ← | 16S rRNA (uracil(1498)‑N(3))‑methyltransferase |
| RA | 480,915 | T→C | K193E (AAA→GAA) | PA14_RS02220 ← | 16S rRNA (uracil(1498)‑N(3))‑methyltransferase |
| RA | 559,051 | +T | intergenic (+619/+70) | PA14_RS02545 → / ← rarD | glycine cleavage system protein R/EamA family transporter RarD |
| JC | 669,999 | Δ8 bp | coding (525‑532/1017 nt) | amgK → | N‑acetylmuramate/N‑acetylglucosamine kinase |
| RA | 732,660 | G→A | intergenic (+114/‑426) | tyrS → / → PA14_RS03450 | tyrosine‑‑tRNA ligase/16S ribosomal RNA |
| RA | 791,848 | C→G | P610A (CCC→GCC) | pchF → | pyochelin non‑ribosomal peptide synthetase PchF |
| RA | 791,862 | 3 bp→GCT | coding (1842‑1844/5430 nt) | pchF → | pyochelin non‑ribosomal peptide synthetase PchF |
| RA | 791,890 | A→G | N624D (AAC→GAC) | pchF → | pyochelin non‑ribosomal peptide synthetase PchF |
| RA | 888,038 | 2 bp→TG | coding (1562‑1563/1878 nt) | PA14_RS04165 → | sigma‑54‑dependent Fis family transcriptional regulator |
| RA | 888,497 | A→C | intergenic (+143/‑62) | PA14_RS04165 → / → PA14_RS04170 | sigma‑54‑dependent Fis family transcriptional regulator/LysE family translocator |
| RA | 927,917 | T→C | I56T (ATC→ACC) | PA14_RS04340 → | PAS domain S‑box protein |
| RA | 945,885 | Δ1 bp | intergenic (‑252/‑69) | PA14_RS04400 ← / → PA14_RS04405 | 2,4'‑dihydroxyacetophenone dioxygenase family protein/helix‑turn‑helix domain‑containing protein |
| RA | 945,897 | (C)5→4 | intergenic (‑264/‑57) | PA14_RS04400 ← / → PA14_RS04405 | 2,4'‑dihydroxyacetophenone dioxygenase family protein/helix‑turn‑helix domain‑containing protein |
| RA | 966,217 | T→C | intergenic (+77/‑568) | PA14_RS04485 → / → PA14_RS04490 | fimbrial protein/response regulator transcription factor |
| RA | 982,940 | A→G | F293F (TTT→TTC) | PA14_RS04570 ← | ABC transporter permease |
| RA | 1,082,923 | Δ1 bp | pseudogene (230/2518 nt) | hrpB → | ATP‑dependent helicase HrpB |
| RA | 1,082,944 | G→C | pseudogene (251/2518 nt) | hrpB → | ATP‑dependent helicase HrpB |
| RA | 1,082,958 | A→G | pseudogene (265/2518 nt) | hrpB → | ATP‑dependent helicase HrpB |
| RA | 1,128,156 | 3 bp→GCG | intergenic (+17/‑42) | PA14_RS05280 → / → PA14_RS05285 | DUF1302 domain‑containing protein/DUF1329 domain‑containing protein |
| RA | 1,128,160 | N→A | intergenic (+21/‑40) | PA14_RS05280 → / → PA14_RS05285 | DUF1302 domain‑containing protein/DUF1329 domain‑containing protein |
| RA | 1,128,162 | N→C | intergenic (+23/‑38) | PA14_RS05280 → / → PA14_RS05285 | DUF1302 domain‑containing protein/DUF1329 domain‑containing protein |
| RA | 1,128,165 | N→G | intergenic (+26/‑35) | PA14_RS05280 → / → PA14_RS05285 | DUF1302 domain‑containing protein/DUF1329 domain‑containing protein |
| RA | 1,144,646 | C→G | intergenic (+239/‑13) | PA14_RS05355 → / → PA14_RS05360 | phosphatidic acid‑binding protein/alkaline phosphatase |
| RA | 1,239,152 | N→C | intergenic (+150/‑43) | PA14_RS05795 → / → lptF | alpha/beta hydrolase/LPS export ABC transporter permease LptF |
| RA | 1,239,163 | (C)5→4 | intergenic (+161/‑32) | PA14_RS05795 → / → lptF | alpha/beta hydrolase/LPS export ABC transporter permease LptF |
| RA | 1,271,763 | Δ1 bp | intergenic (+20/+69) | PA14_RS05965 → / ← PA14_RS05970 | YidB family protein/aldo/keto reductase |
| RA | 1,280,717 | (C)6→5 | intergenic (‑46/+41) | PA14_RS06005 ← / ← PA14_RS06010 | DUF4345 domain‑containing protein/M23 family metallopeptidase |
| RA | 1,356,548 | G→C | R69G (CGT→GGT) | PA14_RS06375 ← | MFS transporter |
| RA | 1,375,947 | A→G | intergenic (+18/‑38) | PA14_RS06470 → / → PA14_RS06475 | PspA/IM30 family protein/DUF1449 family protein |
| RA | 1,441,164 | T→C | I804I (ATT→ATC) | mexK → | multidrug efflux RND transporter permease subunit MexK |
| RA | 1,441,861 | (C)6→4 | intergenic (+31/+11) | mexK → / ← PA14_RS06750 | multidrug efflux RND transporter permease subunit MexK/DUF4197 domain‑containing protein |
| RA | 1,558,205 | A→G | Q390Q (CAA→CAG) | PA14_RS07290 → | propionyl‑CoA synthetase |
| RA | 1,647,551 | Δ1 bp | intergenic (+11/‑91) | apbC → / → dcd | iron‑sulfur cluster carrier protein ApbC/dCTP deaminase |
| RA | 1,880,872 | C→G | A502G (GCC→GGC) | PA14_RS08740 → | DEAD/DEAH box helicase |
| RA | 2,001,809 | T→G | D65E (GAT→GAG) | pgl → | 6‑phosphogluconolactonase |
| RA | 2,001,811 | A→C | Q66P (CAG→CCG) | pgl → | 6‑phosphogluconolactonase |
| RA | 2,001,813 | G→C | V67L (GTG→CTG) | pgl → | 6‑phosphogluconolactonase |
| RA | 2,149,425 | T→C | Q549Q (CAA→CAG) | PA14_RS09965 ← | M14 family metallopeptidase |
| RA | 2,155,075 | Δ1 bp | intergenic (‑123/‑339) | rmf ← / → rlmKL | ribosome modulation factor/bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL |
| RA | 2,156,071 | C→G | pseudogene (658/2179 nt) | rlmKL → | bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL |
| RA | 2,156,146 | C→A | pseudogene (733/2179 nt) | rlmKL → | bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL |
| RA | 2,156,197 | Δ1 bp | pseudogene (784/2179 nt) | rlmKL → | bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL |
| RA | 2,263,699 | Δ1 bp | intergenic (‑449/‑100) | PA14_RS10520 ← / → cobW | CbtB‑domain containing protein/cobalamin biosynthesis protein CobW |
| RA | 2,318,606 | A→G | E190E (GAA→GAG) | sbrI → | ECF family RNA polymerase sigma factor SbrI |
| RA | 2,341,570 | Δ1 bp | pseudogene (530/957 nt) | PA14_RS10890 → | DUF58 domain‑containing protein |
| RA | 2,341,611 | Δ1 bp | pseudogene (571/957 nt) | PA14_RS10890 → | DUF58 domain‑containing protein |
| RA | 2,341,704 | Δ1 bp | pseudogene (664/957 nt) | PA14_RS10890 → | DUF58 domain‑containing protein |
| RA | 2,354,149 | A→G | intergenic (‑34/+17) | PA14_RS10945 ← / ← lipA | lipase secretion chaperone/triacylglycerol lipase |
| RA | 2,354,163 | (G)5→4 | intergenic (‑48/+3) | PA14_RS10945 ← / ← lipA | lipase secretion chaperone/triacylglycerol lipase |
| RA | 2,362,330 | A→C | pseudogene (139/252 nt) | oprI ← | outer membrane lipoprotei OprI |
| RA | 2,362,363 | G→C | pseudogene (106/252 nt) | oprI ← | outer membrane lipoprotei OprI |
| RA | 2,407,435 | C→G | T115T (ACC→ACG) | PA14_RS11255 → | glutathione S‑transferase |
| RA | 2,407,463 | A→G | K125E (AAG→GAG) | PA14_RS11255 → | glutathione S‑transferase |
| RA | 2,465,074 | (G)5→4 | intergenic (+73/+253) | PA14_RS11645 → / ← PA14_RS11650 | DUF3509 domain‑containing protein/hypothetical protein |
| RA | 2,545,609 | T→C | I509I (ATT→ATC) | tssI → | type VI secretion system tip protein TssI/VgrG |
| RA | 2,545,615 | T→C | V511V (GTT→GTC) | tssI → | type VI secretion system tip protein TssI/VgrG |
| RA | 2,545,633 | 2 bp→CT | coding (1551‑1552/2070 nt) | tssI → | type VI secretion system tip protein TssI/VgrG |
| RA | 2,545,663 | T→C | I527I (ATT→ATC) | tssI → | type VI secretion system tip protein TssI/VgrG |
| RA | 2,589,402 | C→T | intergenic (‑45/+1) | nuoK ← / ← nuoJ | NADH‑quinone oxidoreductase subunit NuoK/NADH‑quinone oxidoreductase subunit J |
| RA | 2,594,570 | (G)6→5 | coding (1096/1350 nt) | nuoF ← | NADH‑quinone oxidoreductase subunit NuoF |
| RA | 2,594,625 | Δ1 bp | coding (1041/1350 nt) | nuoF ← | NADH‑quinone oxidoreductase subunit NuoF |
| RA | 2,594,659 | Δ1 bp | coding (1007/1350 nt) | nuoF ← | NADH‑quinone oxidoreductase subunit NuoF |
| RA | 2,651,339 | T→C | F68L (TTC→CTC) | PA14_RS12480 → | MFS transporter |
| RA | 2,651,357 | A→G | N74D (AAC→GAC) | PA14_RS12480 → | MFS transporter |
| RA | 2,707,727 | N→G | ?75P (CNT→CCT) | PA14_RS12740 ← | DUF2285 domain‑containing protein |
| RA | 2,730,678 | C→T | intergenic (+16/+99) | PA14_RS12860 → / ← ctpH | anti‑virulence regulator CigR family protein/methyl‑accepting chemotaxis protein CtpH |
| RA | 2,730,681 | 2 bp→CG | intergenic (+19/+95) | PA14_RS12860 → / ← ctpH | anti‑virulence regulator CigR family protein/methyl‑accepting chemotaxis protein CtpH |
| RA | 2,762,006 | A→G | K119E (AAG→GAG) | PA14_RS12995 → | lysophospholipid acyltransferase family protein |
| RA | 2,762,024 | A→G | N125D (AAC→GAC) | PA14_RS12995 → | lysophospholipid acyltransferase family protein |
| RA | 2,762,027 | A→G | N126D (AAC→GAC) | PA14_RS12995 → | lysophospholipid acyltransferase family protein |
| RA | 2,762,030 | A→G | K127E (AAG→GAG) | PA14_RS12995 → | lysophospholipid acyltransferase family protein |
| RA | 2,787,777 | C→G | pseudogene (855/3090 nt) | PA14_RS13085 → | CusA/CzcA family heavy metal efflux RND transporter |
| RA | 2,787,784 | T→G | pseudogene (862/3090 nt) | PA14_RS13085 → | CusA/CzcA family heavy metal efflux RND transporter |
| RA | 2,787,820 | +A | pseudogene (898/3090 nt) | PA14_RS13085 → | CusA/CzcA family heavy metal efflux RND transporter |
| RA | 2,787,829 | 2 bp→AG | pseudogene (907‑908/3090 nt) | PA14_RS13085 → | CusA/CzcA family heavy metal efflux RND transporter |
| RA | 2,787,861 | 3 bp→GTG | pseudogene (939‑941/3090 nt) | PA14_RS13085 → | CusA/CzcA family heavy metal efflux RND transporter |
| RA | 2,787,867 | T→A | pseudogene (945/3090 nt) | PA14_RS13085 → | CusA/CzcA family heavy metal efflux RND transporter |
| RA | 2,787,871 | Δ1 bp | pseudogene (949/3090 nt) | PA14_RS13085 → | CusA/CzcA family heavy metal efflux RND transporter |
| RA | 2,787,873 | A→C | pseudogene (951/3090 nt) | PA14_RS13085 → | CusA/CzcA family heavy metal efflux RND transporter |
| RA | 2,787,877 | C→G | pseudogene (955/3090 nt) | PA14_RS13085 → | CusA/CzcA family heavy metal efflux RND transporter |
| RA | 2,787,882 | +G | pseudogene (960/3090 nt) | PA14_RS13085 → | CusA/CzcA family heavy metal efflux RND transporter |
| RA | 2,787,895 | Δ1 bp | pseudogene (973/3090 nt) | PA14_RS13085 → | CusA/CzcA family heavy metal efflux RND transporter |
| RA | 2,807,266 | G→C | V137L (GTG→CTG) | PA14_RS13175 → | leucine‑rich repeat‑containing protein kinase family protein |
| RA | 2,840,442 | T→C | intergenic (+42/‑47) | PA14_RS13335 → / → PA14_RS13340 | LysR substrate‑binding domain‑containing protein/sigma‑70 family RNA polymerase sigma factor |
| RA | 2,840,444 | T→C | intergenic (+44/‑45) | PA14_RS13335 → / → PA14_RS13340 | LysR substrate‑binding domain‑containing protein/sigma‑70 family RNA polymerase sigma factor |
| RA | 2,885,933 | G→C | G71G (GGG→GGC) | gcvH → | glycine cleavage system protein GcvH |
| RA | 2,955,357 | A→G | L314L (TTG→CTG) | PA14_RS13700 ← | PepSY domain‑containing protein |
| RA | 2,955,433 | A→G | A288A (GCT→GCC) | PA14_RS13700 ← | PepSY domain‑containing protein |
| RA | 2,955,468 | A→G | L277L (TTG→CTG) | PA14_RS13700 ← | PepSY domain‑containing protein |
| RA | 2,985,345 | A→G | K2233E (AAA→GAA) | pvdD → | pyoverdine non‑ribosomal peptide synthetase PvdD |
| RA | 3,051,401 | T→C | N373D (AAC→GAC) | PA14_RS13990 ← | SfnB family sulfur acquisition oxidoreductase |
| RA | 3,051,413 | T→C | K369E (AAG→GAG) | PA14_RS13990 ← | SfnB family sulfur acquisition oxidoreductase |
| RA | 3,051,443 | T→C | K359E (AAG→GAG) | PA14_RS13990 ← | SfnB family sulfur acquisition oxidoreductase |
| RA | 3,114,336 | A→G | intergenic (+69/‑63) | PA14_RS14235 → / → PA14_RS14240 | glucose/quinate/shikimate family membrane‑bound PQQ‑dependent dehydrogenase/TonB‑dependent receptor |
| RA | 3,150,987 | Δ1 bp | intergenic (‑192/+24) | pvcA ← / ← PA14_RS14420 | paerucumarin biosynthesis protein PvcA/asparaginase |
| RA | 3,198,146 | Δ1 bp | coding (230/1980 nt) | PA14_RS14610 ← | cation/acetate symporter |
| RA | 3,198,441 | T→G | A547A (GCA→GCC) | PA14_RS14615 ← | acyl‑CoA synthetase |
| RA | 3,281,477 | G→C | intergenic (‑25/+44) | katE ← / ← PA14_RS14985 | catalase HPII/general stress protein |
| RA | 3,356,495 | G→C | intergenic (+22/+49) | PA14_RS15330 → / ← PA14_RS31420 | hypothetical protein/hypothetical protein |
| RA | 3,373,667 | G→C | V352V (GTC→GTG) | PA14_RS15385 ← | aminotransferase class V‑fold PLP‑dependent enzyme |
| RA | 3,374,601 | A→G | F41S (TTC→TCC) | PA14_RS15385 ← | aminotransferase class V‑fold PLP‑dependent enzyme |
| RA | 3,387,854 | A→C | I38L (ATC→CTC) | cynS → | cyanase |
| RA | 3,387,865 | A→C | T41T (ACA→ACC) | cynS → | cyanase |
| RA | 3,387,868 | A→C | L42F (TTA→TTC) | cynS → | cyanase |
| RA | 3,387,881 | A→C | M47L (ATG→CTG) | cynS → | cyanase |
| RA | 3,387,884 | T→C | F48L (TTC→CTC) | cynS → | cyanase |
| RA | 3,387,941 | A→C | M67L (ATG→CTG) | cynS → | cyanase |
| RA | 3,390,474 | Δ1 bp | pseudogene (440/1997 nt) | PA14_RS15455 → | alkaline phosphatase D family protein |
| RA | 3,390,485 | Δ1 bp | pseudogene (451/1997 nt) | PA14_RS15455 → | alkaline phosphatase D family protein |
| RA | 3,390,498 | A→C | pseudogene (464/1997 nt) | PA14_RS15455 → | alkaline phosphatase D family protein |
| RA | 3,423,281 | A→G | K130K (AAA→AAG) | mexY → | multidrug efflux RND transporter permease subunit MexY |
| RA | 3,423,414 | C→G | Q175E (CAG→GAG) | mexY → | multidrug efflux RND transporter permease subunit MexY |
| RA | 3,424,152 | C→G | Q421E (CAA→GAG) | mexY → | multidrug efflux RND transporter permease subunit MexY |
| RA | 3,424,154 | A→G | Q421E (CAA→GAG) | mexY → | multidrug efflux RND transporter permease subunit MexY |
| RA | 3,424,176 | A→G | T429A (ACC→GCC) | mexY → | multidrug efflux RND transporter permease subunit MexY |
| RA | 3,424,199 | A→G | Q436Q (CAA→CAG) | mexY → | multidrug efflux RND transporter permease subunit MexY |
| RA | 3,426,133 | Δ1 bp | intergenic (+104/+138) | mexY → / ← PA14_RS15615 | multidrug efflux RND transporter permease subunit MexY/YjiK family protein |
| RA | 3,443,292 | C→G | P459A (CCC→GCC) | PA14_RS15680 → | GntP family permease |
| RA | 3,489,979 | (G)5→4 | pseudogene (154/718 nt) | PA14_RS15905 ← | DUF1294 domain‑containing protein |
| RA | 3,515,863 | T→C | intergenic (+617/+267) | PA14_RS16005 → / ← PA14_RS16010 | AAA family ATPase/DUF4354 family protein |
| RA | 3,543,662 | A→G | T494A (ACG→GCG) | PA14_RS16110 → | PucR family transcriptional regulator |
| RA | 3,566,665 | Δ1 bp | pseudogene (1016/1275 nt) | PA14_RS16215 → | fatty acid desaturase |
| RA | 3,566,716 | A→G | pseudogene (1067/1275 nt) | PA14_RS16215 → | fatty acid desaturase |
| RA | 3,566,730 | A→G | pseudogene (1081/1275 nt) | PA14_RS16215 → | fatty acid desaturase |
| RA | 3,566,749 | A→G | pseudogene (1100/1275 nt) | PA14_RS16215 → | fatty acid desaturase |
| RA | 3,566,751 | A→G | pseudogene (1102/1275 nt) | PA14_RS16215 → | fatty acid desaturase |
| RA | 3,566,769 | A→G | pseudogene (1120/1275 nt) | PA14_RS16215 → | fatty acid desaturase |
| RA | 3,566,788 | A→G | pseudogene (1139/1275 nt) | PA14_RS16215 → | fatty acid desaturase |
| RA | 3,566,823 | +A | pseudogene (1174/1275 nt) | PA14_RS16215 → | fatty acid desaturase |
| RA | 3,644,364 | Δ1 bp | intergenic (‑115/‑120) | sohB ← / → PA14_RS16560 | protease SohB/histidine phosphatase family protein |
| RA | 3,662,614 | T→C | F10F (TTT→TTC) | gloB → | hydroxyacylglutathione hydrolase |
| RA | 3,670,384 | A→G | Q128Q (CAA→CAG) | PA14_RS16675 → | ABC transporter permease |
| RA | 3,670,537 | Δ1 bp | coding (537/1020 nt) | PA14_RS16675 → | ABC transporter permease |
| RA | 3,670,543 | +A | coding (543/1020 nt) | PA14_RS16675 → | ABC transporter permease |
| RA | 3,673,519 | N→C | intergenic (+68/+30) | fabI → / ← PA14_RS16690 | enoyl‑ACP reductase FabI/SurA N‑terminal domain‑containing protein |
| RA | 3,673,524 | A→G | intergenic (+73/+25) | fabI → / ← PA14_RS16690 | enoyl‑ACP reductase FabI/SurA N‑terminal domain‑containing protein |
| RA | 3,673,534 | 3 bp→CTC | intergenic (+83/+13) | fabI → / ← PA14_RS16690 | enoyl‑ACP reductase FabI/SurA N‑terminal domain‑containing protein |
| RA | 3,711,749 | T→C | L37L (TTG→CTG) | cobA → | uroporphyrinogen‑III C‑methyltransferase |
| RA | 3,711,791 | G→C | V51L (GTG→CTG) | cobA → | uroporphyrinogen‑III C‑methyltransferase |
| RA | 3,769,180 | C→G | A44A (GCG→GCC) | pscL ← | SctL family type III secretion system stator protein PscL |
| RA | 3,879,553 | A→G | F52L (TTC→CTC) | PA14_RS17695 ← | LysE family translocator |
| RA | 3,909,637 | (G)5→4 | intergenic (‑133/+14) | PA14_RS17840 ← / ← brnQ | DUF599 domain‑containing protein/branched‑chain amino acid transport system II carrier protein |
| RA | 3,933,352 | C→G | P346P (CCC→CCG) | PA14_RS17955 → | MFS transporter |
| RA | 4,075,127 | G→A | R419C (CGC→TGC) | PA14_RS18615 ← | sensor histidine kinase |
| RA | 4,078,476 | T→C | N596S (AAC→AGC) | mexN ← | multidrug efflux RND transporter permease subunit MexN |
| RA | 4,079,433 | G→A | A277V (GCC→GTC) | mexN ← | multidrug efflux RND transporter permease subunit MexN |
| RA | 4,167,196 | Δ1 bp | intergenic (+41/‑131) | PA14_RS19010 → / → PA14_RS19015 | VOC family protein/MFS transporter |
| RA | 4,407,236 | A→G | intergenic (+107/‑205) | PA14_RS20115 → / → toxA | ATP‑grasp domain‑containing protein/exotoxin A |
| RA | 4,565,005 | C→G | G319A (GGG→GCG) | PA14_RS20885 ← | anthranilate synthase component 1 |
| RA | 4,565,040 | A→G | F307F (TTT→TTC) | PA14_RS20885 ← | anthranilate synthase component 1 |
| RA | 4,565,093 | C→G | G290R (GGC→CGC) | PA14_RS20885 ← | anthranilate synthase component 1 |
| RA | 4,659,805 | A→G | intergenic (+45/+54) | alpR → / ← PA14_RS21395 | transcriptional regulator AlpR/tRNA‑Arg |
| RA | 4,659,822 | A→G | intergenic (+62/+37) | alpR → / ← PA14_RS21395 | transcriptional regulator AlpR/tRNA‑Arg |
| RA | 4,659,831 | Δ1 bp | intergenic (+71/+28) | alpR → / ← PA14_RS21395 | transcriptional regulator AlpR/tRNA‑Arg |
| RA | 4,700,807 | Δ1 bp | intergenic (+165/‑150) | PA14_RS21585 → / → pbpG | aspartate/tyrosine/aromatic aminotransferase/D‑alanyl‑D‑alanine endopeptidase |
| RA | 4,707,658 | G→C | A165A (GCG→GCC) | PA14_RS21625 → | zinc‑binding alcohol dehydrogenase family protein |
| RA | 4,707,787 | G→C | A208A (GCG→GCC) | PA14_RS21625 → | zinc‑binding alcohol dehydrogenase family protein |
| RA | 4,760,743 | A→G | L73P (CTT→CCT) | PA14_RS21850 ← | HNH endonuclease |
| RA | 4,819,717 | (C)5→4 | intergenic (‑115/+55) | PA14_RS22115 ← / ← lepB | DUF4845 domain‑containing protein/signal peptidase I |
| RA | 4,947,626 | A→G | K147R (AAG→AGG) | PA14_RS22670 → | DNA polymerase Y family protein |
| RA | 4,947,631 | A→C | M149L (ATG→CTG) | PA14_RS22670 → | DNA polymerase Y family protein |
| RA | 4,947,633 | +G | coding (447/1416 nt) | PA14_RS22670 → | DNA polymerase Y family protein |
| RA | 4,947,636 | C→A | R150R (CGC→CGA) | PA14_RS22670 → | DNA polymerase Y family protein |
| RA | 4,947,639 | Δ1 bp | coding (453/1416 nt) | PA14_RS22670 → | DNA polymerase Y family protein |
| RA | 4,947,641 | 2 bp→GC | coding (455‑456/1416 nt) | PA14_RS22670 → | DNA polymerase Y family protein |
| RA | 4,947,645 | G→C | Q153H (CAG→CAC) | PA14_RS22670 → | DNA polymerase Y family protein |
| RA | 4,947,649 | 2 bp→GG | coding (463‑464/1416 nt) | PA14_RS22670 → | DNA polymerase Y family protein |
| RA | 4,947,652 | A→C | I156M (ATT→CTG) | PA14_RS22670 → | DNA polymerase Y family protein |
| RA | 4,947,654 | 2 bp→GG | coding (468‑469/1416 nt) | PA14_RS22670 → | DNA polymerase Y family protein |
| RA | 4,947,683 | A→G | H166R (CAC→CGC) | PA14_RS22670 → | DNA polymerase Y family protein |
| RA | 4,957,532 | A→G | intergenic (‑354/‑318) | PA14_RS22700 ← / → PA14_RS22705 | 16S ribosomal RNA/exonuclease SbcCD subunit D C‑terminal domain‑containing protein |
| RA | 4,957,549 | 2 bp→AT | intergenic (‑371/‑300) | PA14_RS22700 ← / → PA14_RS22705 | 16S ribosomal RNA/exonuclease SbcCD subunit D C‑terminal domain‑containing protein |
| RA | 4,978,469 | Δ1 bp | intergenic (+125/‑20) | PA14_RS31455 → / → PA14_RS22760 | hypothetical protein/inorganic phosphate transporter |
| RA | 4,997,786 | T→C | K173E (AAG→GAG) | PA14_RS22840 ← | DUF853 family protein |
| RA | 5,028,119 | Δ1 bp | intergenic (‑41/+96) | PA14_RS22975 ← / ← PA14_RS22980 | Nramp family divalent metal transporter/ribbon‑helix‑helix domain‑containing protein |
| RA | 5,028,197 | Δ1 bp | intergenic (‑119/+18) | PA14_RS22975 ← / ← PA14_RS22980 | Nramp family divalent metal transporter/ribbon‑helix‑helix domain‑containing protein |
| RA | 5,028,199 | G→C | intergenic (‑121/+16) | PA14_RS22975 ← / ← PA14_RS22980 | Nramp family divalent metal transporter/ribbon‑helix‑helix domain‑containing protein |
| RA | 5,028,201 | 2 bp→CG | intergenic (‑123/+13) | PA14_RS22975 ← / ← PA14_RS22980 | Nramp family divalent metal transporter/ribbon‑helix‑helix domain‑containing protein |
| RA | 5,103,224 | 2 bp→CA | coding (818‑819/1185 nt) | ftsZ ← | cell division protein FtsZ |
| RA | 5,103,259 | T→G | M262L (ATG→CTG) | ftsZ ← | cell division protein FtsZ |
| RA | 5,103,291 | C→T | G251E (GGA→GAA) | ftsZ ← | cell division protein FtsZ |
| RA | 5,103,303 | G→T | T247N (ACC→AAC) | ftsZ ← | cell division protein FtsZ |
| RA | 5,103,322 | G→T | P241T (CCC→ACC) | ftsZ ← | cell division protein FtsZ |
| RA | 5,116,391 | C→T | R504H (CGC→CAC) | ftsI ← | peptidoglycan D,D‑transpeptidase FtsI |
| MC JC | 5,131,729 | Δ34 bp | pseudogene (288‑321/1180 nt) | PA14_RS23490 ← | acyl‑CoA dehydrogenase family protein |
| RA | 5,198,405 | T→C | intergenic (+31/+37) | PA14_RS23800 → / ← mdpA | ABC transporter substrate‑binding protein/metallopeptidase MdpA |
| RA | 5,256,362 | N→C | ?82A (GNC→GCC) | dnaB → | replicative DNA helicase |
| RA | 5,256,376 | T→C | F87L (TTC→CTC) | dnaB → | replicative DNA helicase |
| RA | 5,256,379 | C→G | P88A (CCC→GCC) | dnaB → | replicative DNA helicase |
| RA | 5,256,382 | A→G | N89D (AAC→GAC) | dnaB → | replicative DNA helicase |
| RA | 5,315,218 | Δ1 bp | coding (325/330 nt) | PA14_RS31685 → | FimD/PapC N‑terminal domain‑containing protein |
| RA | 5,358,513 | Δ1 bp | pseudogene (774/1285 nt) | PA14_RS24540 → | site‑specific integrase |
| RA | 5,395,470 | Δ1 bp | intergenic (‑103/+50) | PA14_RS24730 ← / ← PA14_RS24735 | hypothetical protein/ATP‑binding protein |
| RA | 5,395,476 | (G)5→4 | intergenic (‑109/+44) | PA14_RS24730 ← / ← PA14_RS24735 | hypothetical protein/ATP‑binding protein |
| RA | 5,514,060 | (G)5→4 | intergenic (+15/+136) | PA14_RS25260 → / ← PA14_RS25265 | tRNA‑Met/HigA family addiction module antitoxin |
| RA | 5,530,315 | A→G | K229K (AAA→AAG) | PA14_RS25330 → | iron ABC transporter substrate‑binding protein |
| RA | 5,648,548 | A→G | intergenic (‑223/‑38) | PA14_RS25880 ← / → PA14_RS25885 | AraC family transcriptional regulator/MaoC/PaaZ C‑terminal domain‑containing protein |
| RA | 5,648,573 | A→G | intergenic (‑248/‑13) | PA14_RS25880 ← / → PA14_RS25885 | AraC family transcriptional regulator/MaoC/PaaZ C‑terminal domain‑containing protein |
| RA | 5,757,525 | G→C | Q27E (CAG→GAG) | PA14_RS26415 ← | ferredoxin reductase |
| RA | 5,757,527 | G→C | P26R (CCC→CGC) | PA14_RS26415 ← | ferredoxin reductase |
| RA | 5,791,938 | A→G | intergenic (+32/‑103) | nadE → / → choE | ammonia‑dependent NAD(+) synthetase/cholinesterase ChoE |
| RA | 5,791,973 | Δ1 bp | intergenic (+67/‑68) | nadE → / → choE | ammonia‑dependent NAD(+) synthetase/cholinesterase ChoE |
| RA | 5,792,010 | A→G | intergenic (+104/‑31) | nadE → / → choE | ammonia‑dependent NAD(+) synthetase/cholinesterase ChoE |
| JC | 5,809,296 | Δ3 bp | intergenic (‑182/+35) | rpsF ← / ← rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| RA | 5,809,308 | Δ1 bp | intergenic (‑194/+25) | rpsF ← / ← rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| RA | 5,809,309 | C→G | intergenic (‑195/+24) | rpsF ← / ← rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| RA | 5,809,311 | C→G | intergenic (‑197/+22) | rpsF ← / ← rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| RA | 5,809,315 | G→C | intergenic (‑201/+18) | rpsF ← / ← rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| RA | 5,809,318 | G→C | intergenic (‑204/+15) | rpsF ← / ← rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| RA | 5,809,365 | T→C | K239E (AAG→GAG) | rlmB ← | 23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| RA | 5,866,730 | T→G | A733A (GCA→GCC) | PA14_RS26890 ← | ATP‑binding protein |
| MC JC | 5,891,711 | Δ20 bp | coding (694‑713/1419 nt) | PA14_RS26995 ← | PIG‑L family deacetylase |
| RA | 5,905,079 | A→G | F731F (TTT→TTC) | glnE ← | bifunctional [glutamate‑‑ammonia ligase]‑adenylyl‑L‑tyrosine phosphorylase/[glutamate‑‑ammonia‑ligase] adenylyltransferase |
| RA | 5,931,597 | Δ1 bp | intergenic (‑16/‑162) | PA14_RS27130 ← / → PA14_RS27135 | LysR family transcriptional regulator/MFS transporter |
| RA | 5,931,608 | (T)6→5 | intergenic (‑27/‑151) | PA14_RS27130 ← / → PA14_RS27135 | LysR family transcriptional regulator/MFS transporter |
| RA | 5,968,025 | C→G | P426A (CCC→GCC) | phaC → | class II poly(R)‑hydroxyalkanoic acid synthase |
| RA | 6,070,064 | Δ1 bp | pseudogene (533/1086 nt) | PA14_RS27735 → | oxidoreductase |
| RA | 6,070,078 | T→C | pseudogene (547/1086 nt) | PA14_RS27735 → | oxidoreductase |
| RA | 6,070,084 | T→C | pseudogene (553/1086 nt) | PA14_RS27735 → | oxidoreductase |
| RA | 6,070,093 | Δ1 bp | pseudogene (562/1086 nt) | PA14_RS27735 → | oxidoreductase |
| RA | 6,070,098 | G→C | pseudogene (567/1086 nt) | PA14_RS27735 → | oxidoreductase |
| RA | 6,070,100 | T→C | pseudogene (569/1086 nt) | PA14_RS27735 → | oxidoreductase |
| RA | 6,070,106 | Δ1 bp | pseudogene (575/1086 nt) | PA14_RS27735 → | oxidoreductase |
| RA | 6,070,122 | T→C | pseudogene (591/1086 nt) | PA14_RS27735 → | oxidoreductase |
| RA | 6,076,066 | G→C | R105R (CGG→CGC) | PA14_RS27775 → | methyltransferase |
| RA | 6,102,509 | (G)5→4 | intergenic (+35/+18) | yrfG → / ← lysM | GMP/IMP nucleotidase/peptidoglycan‑binding protein LysM |
| RA | 6,128,635 | Δ1 bp | intergenic (+100/‑108) | PA14_RS28015 → / → gshA | PaaI family thioesterase/glutamate‑‑cysteine ligase |
| RA | 6,205,906 | Δ1 bp | intergenic (‑11/+186) | PA14_RS28345 ← / ← PA14_RS28350 | type VI secretion system tip protein VgrG/Hcp family type VI secretion system effector |
| RA | 6,250,873 | Δ1 bp | intergenic (+16/‑163) | dadR → / → PA14_RS28560 | transcriptional regulator DadR/FAD‑binding oxidoreductase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_008463 | 1639788–1640195 | 1641131–1640353 | 159–1344 | 309 [302] | [304] 307 | tssI | type VI secretion system tip protein TssI/VgrG |
| * | * | ÷ | NC_008463 | 3555794–3558066 | 3559471–3558140 | 75–3678 | 313 [304] | [305] 307 | [phzG]–[phzD] | [phzG],phzF,phzE,[phzD] |
| * | * | ÷ | NC_008463 | 3832312–3832406 | 3832473–3832409 | 4–162 | 307 [305] | [301] 309 | [PA14_RS17495] | [PA14_RS17495] |
| * | * | ÷ | NC_008463 | 4952016–4952922 | 4953913–4952951 | 30–1898 | 306 [302] | [305] 309 | rrf–[PA14_RS22685] | rrf,[PA14_RS22685] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_008463 | 3175697 = | 421 (0.790) | 552 (1.140) | 220/274 | 0.0 | 61.8% | intergenic (+390/+106) | PA14_RS30505/PA14_RS14515 | hypothetical protein/hypothetical protein |
| ? | NC_008463 | = 3177289 | 299 (0.620) | intergenic (‑69/‑218) | PA14_RS14525/PA14_RS14530 | hypothetical protein/Tn3 family transposase | |||||