mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,688,990 | 0 | A | C | 42.4% | 39.5 / 13.5 | 33 | T92P (ACC→CCC) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
| * | REL606 | 3,492,082 | 0 | T | G | 38.8% | 79.6 / 16.8 | 49 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 4,574,252 | 0 | T | G | 36.7% | 48.4 / 11.9 | 30 | S5S (TCA→TCC) | hpaX | hypothetical 4‑hydroxyphenylacetate permease |
| * | REL606 | 3,983,700 | 0 | T | G | 34.2% | 64.8 / 23.1 | 41 | T397P (ACC→CCC) | ECB_03713 | conserved hypothetical protein |
| * | REL606 | 4,393,061 | 0 | T | G | 31.8% | 87.9 / 12.2 | 44 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 1,795,650 | 0 | A | C | 29.0% | 150.7 / 11.7 | 62 | V39G (GTG→GGG) | celF | cryptic phospho‑beta‑glucosidase, NAD(P)‑binding |
| * | REL606 | 716,832 | 0 | T | G | 27.5% | 103.7 / 17.6 | 51 | A31A (GCA→GCC) | ECB_00663 | hypothetical protein |
| * | REL606 | 2,631,772 | 0 | A | C | 27.1% | 102.4 / 12.2 | 48 | intergenic (‑267/‑141) | rpoE/nadB | RNA polymerase, sigma 24 (sigma E) factor/L‑aspartate oxidase |
| * | REL606 | 2,296,329 | 0 | A | C | 26.2% | 141.0 / 15.5 | 61 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,484,105 | 0 | A | G | 25.5% | 108.7 / 12.0 | 47 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 1,875,483 | 0 | G | C | 22.7% | 332.8 / 83.2 | 128 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| * | REL606 | 1,747,903 | 0 | G | T | 20.0% | 286.5 / 45.0 | 90 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 46 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2038074 = | 55 (0.920) | 8 (0.150) | 7/134 | 5.6 | 12.7% | coding (57/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2038286 = | 61 (1.140) | coding (663/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | 2041054 = | 67 (1.120) | 9 (0.170) | 7/136 | 5.7 | 11.3% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 81 (1.490) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 3022429 = | 76 (1.270) | 6 (0.110) | 6/136 | 6.1 | 7.9% | coding (256/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022636 = | 71 (1.310) | coding (49/1140 nt) | ECB_02821 | hypothetical protein | |||||
| * | ? | REL606 | = 3588123 | 86 (1.430) | 5 (0.090) | 5/138 | 6.7 | 5.8% | coding (267/528 nt) | yhiE | DNA‑binding transcriptional activator |
| ? | REL606 | = 3588286 | 83 (1.500) | coding (430/528 nt) | yhiE | DNA‑binding transcriptional activator | |||||
| * | ? | REL606 | 3022554 = | 84 (1.400) | 6 (0.110) | 5/138 | 6.7 | 6.1% | coding (131/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022717 = | 106 (1.920) | intergenic (‑33/+541) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||
| * | ? | REL606 | = 2039999 | 65 (1.080) | 5 (0.090) | 5/138 | 6.7 | 8.5% | coding (130/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | = 2040151 | 48 (0.870) | intergenic (‑23/+120) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| * | ? | REL606 | 2040311 = | 67 (1.120) | 5 (0.090) | 5/140 | 6.8 | 7.6% | coding (1073/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040458 = | 59 (1.050) | coding (926/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| * | ? | REL606 | = 2037859 | 91 (1.520) | 12 (0.210) | 5/144 | 6.9 | 14.0% | coding (272/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | = 2038290 | 60 (1.040) | coding (659/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | 2036228 = | 64 (1.070) | 7 (0.130) | 4/130 | 6.9 | 10.7% | coding (731/1113 nt) | wbbC | putative glycosyltransferase WbbC |
| ? | REL606 | 2036759 = | 62 (1.190) | coding (200/1113 nt) | wbbC | putative glycosyltransferase WbbC | |||||
| * | ? | REL606 | 3021263 = | 91 (1.520) | 4 (0.080) | 4/132 | 7.0 | 5.2% | coding (221/933 nt) | ECB_02820 | hypothetical protein |
| ? | REL606 | 3021399 = | 67 (1.270) | coding (85/933 nt) | ECB_02820 | hypothetical protein | |||||