mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 111,013 | G→A | 6.0% | intergenic (+29/‑31) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 111,016 | T→C | 6.0% | intergenic (+32/‑28) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 127,442 | T→A | 7.3% | V583E (GTG→GAG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 156,683 | G→A | 5.6% | G67G (GGC→GGT) | yadN ← | putative fimbrial‑like adhesin protein |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 323,062 | A→G | 7.8% | E242G (GAG→GGG) | ykgF → | ferridoxin‑like LutB family protein; putative electron transport chain YkgEFG component |
| RA | 357,778 | C→T | 7.4% | intergenic (+324/+13) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 475,971 | C→G | 5.4% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 5.4% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 611,895 | G→T | 5.4% | S200R (AGC→AGA) | fepA ← | ferrienterobactin outer membrane transporter |
| RA | 670,147 | C→T | 5.3% | A142A (GCG→GCA) | nadD ← | nicotinic acid mononucleotide adenylyltransferase, NAD(P)‑dependent |
| RA | 696,410 | C→T | 5.8% | intergenic (+134/+20) | ubiF → / ← glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| RA | 696,411 | G→T | 5.2% | intergenic (+135/+19) | ubiF → / ← glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| RA | 696,412 | A→C | 5.9% | intergenic (+136/+18) | ubiF → / ← glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| RA | 696,413 | A→G | 5.8% | intergenic (+137/+17) | ubiF → / ← glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| RA | 755,790 | G→A | 74.8% | W77* (TGG→TGA) | sdhD → | succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| RA | 756,966 | C→T | 8.8% | H354Y (CAC→TAC) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 857,576 | T→C | 5.6% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 5.6% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 5.6% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 900,712 | G→A | 5.1% | intergenic (‑137/+154) | artJ ← / ← artM | arginine ABC transporter periplasmic binding protein/arginine ABC transporter permease |
| RA | 900,713 | G→A | 5.1% | intergenic (‑138/+153) | artJ ← / ← artM | arginine ABC transporter periplasmic binding protein/arginine ABC transporter permease |
| RA | 957,452 | T→C | 6.2% | *231R (TGA→CGA) | ycaP → | UPF0702 family putative inner membrane protein |
| RA | 1,015,912 | T→A | 5.9% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,038,557 | C→T | 6.0% | A273V (GCC→GTC) | cbdA → | cytochrome bd‑II oxidase, subunit I |
| RA | 1,120,361 | G→A | 5.0% | R76C (CGC→TGC) | solA ← | N‑methyltryptophan oxidase, FAD‑binding |
| JC JC | 1,196,376 | IS1 (+) +8 bp | 5.4% | intergenic (+3/+484) | icd → / ← ymfD | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,205,650:1 | +A | 5.8% | coding (102/183 nt) | ymfR → | e14 prophage; uncharacterized protein |
| RA | 1,211,610 | A→G | 6.4% | intergenic (+33/+70) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,612 | A→T | 6.4% | intergenic (+35/+68) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,614 | C→T | 6.3% | intergenic (+37/+66) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,286,787 | G→A | 5.7% | intergenic (+261/+279) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,287,009 | A→T | 8.0% | intergenic (+483/+57) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| JC JC | 1,293,032 | IS1 (–) +8 bp | 100% | intergenic (‑110/‑488) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,411,903 | T→C | 5.2% | N16D (AAC→GAC) | ttcA ← | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,708,854 | C→G | 20.5% | Q646E (CAA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,729,865 | C→T | 5.9% | S260L (TCG→TTG) | lhr → | putative ATP‑dependent helicase |
| RA | 1,820,566 | T→A | 5.6% | I217F (ATC→TTC) | chbC ← | N,N'‑diacetylchitobiose‑specific enzyme IIC component of PTS |
| RA | 1,845,901 | G→A | 5.2% | H354Y (CAT→TAT) | topB ← | DNA topoisomerase III |
| RA | 1,864,758 | G→A | 5.5% | intergenic (+24/+24) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,763 | A→T | 5.9% | intergenic (+29/+19) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,768 | T→C | 6.7% | intergenic (+34/+14) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,933,049 | A→G | 5.4% | V519A (GTG→GCG) | edd ← | 6‑phosphogluconate dehydratase |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,985,112 | C→G | 5.2% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 2,009,731 | A→G | 6.0% | intergenic (+19/‑90) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,732 | C→G | 6.7% | intergenic (+20/‑89) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,733 | C→T | 5.8% | intergenic (+21/‑88) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,016,877 | G→C | 5.1% | K108N (AAG→AAC) | fliI → | flagellum‑specific ATP synthase |
| RA | 2,016,878 | C→T | 5.1% | Q109* (CAG→TAG) ‡ | fliI → | flagellum‑specific ATP synthase |
| RA | 2,016,879 | A→G | 5.1% | Q109R (CAG→CGG) ‡ | fliI → | flagellum‑specific ATP synthase |
| RA | 2,016,880 | G→C | 5.1% | Q109H (CAG→CAC) ‡ | fliI → | flagellum‑specific ATP synthase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,372,984 | G→A | 5.1% | T31T (ACG→ACA) | arnF → | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit |
| RA | 2,383,956 | A→T | 6.0% | intergenic (+32/+39) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,383,959 | A→T | 6.6% | intergenic (+35/+36) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,416,337 | G→A | 5.5% | A531T (GCA→ACA) | pta → | phosphate acetyltransferase |
| RA | 2,560,996 | G→T | 14.9% | intergenic (+98/‑372) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,586,450 | C→A | 6.4% | L240L (CTC→CTA) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,716,030 | T→G | 6.4% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 6.4% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,767,667 | T→G | 5.7% | intergenic (+312/‑43) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,767,670 | C→A | 7.4% | intergenic (+315/‑40) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,802,411 | C→A | 5.0% | A355E (GCA→GAA) | nrdE → | ribonucleoside‑diphosphate reductase 2, alpha subunit |
| RA | 2,804,528 | C→A | 11.1% | intergenic (+67/‑287) | nrdF → / → proV | ribonucleoside‑diphosphate reductase 2, beta subunit, ferritin‑like protein/glycine betaine/proline ABC transporter periplasmic binding protein |
| RA | 2,866,487 | G→C | 6.3% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 6.6% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,951,471 | G→A | 7.0% | R331C (CGC→TGC) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,951,475 | T→A | 6.8% | L329L (CTA→CTT) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,951,479 | T→C | 6.9% | Q328R (CAG→CGG) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 3,139,632 | A→G | 5.2% | intergenic (+39/+84) | yghU → / ← hybG | putative S‑transferase/hydrogenase 2 accessory protein |
| RA | 3,139,633 | A→C | 5.3% | intergenic (+40/+83) | yghU → / ← hybG | putative S‑transferase/hydrogenase 2 accessory protein |
| RA | 3,139,639 | T→G | 6.2% | intergenic (+46/+77) | yghU → / ← hybG | putative S‑transferase/hydrogenase 2 accessory protein |
| RA | 3,165,428 | C→T | 5.2% | P182P (CCG→CCA) | parC ← | DNA topoisomerase IV, subunit A |
| RA | 3,199,287 | Δ1 bp | 5.1% | coding (355/2841 nt) | glnE ← | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
| RA | 3,199,288 | Δ1 bp | 5.1% | coding (354/2841 nt) | glnE ← | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
| RA | 3,199,289 | Δ1 bp | 5.1% | coding (353/2841 nt) | glnE ← | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
| RA | 3,270,030 | T→C | 24.7% | intergenic (+428/+186) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,282,202 | C→T | 6.0% | A76V (GCC→GTC) | agaS → | tagatose‑6‑phosphate ketose/aldose isomerase |
| RA | 3,439,589 | G→C | 6.2% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,683,472 | G→T | 9.1% | intergenic (‑25/+158) | dctA ← / ← yhjK | C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase |
| RA | 3,683,473 | G→T | 11.6% | intergenic (‑26/+157) | dctA ← / ← yhjK | C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase |
| RA | 3,683,479 | Δ1 bp | 14.3% | intergenic (‑32/+151) | dctA ← / ← yhjK | C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase |
| RA | 3,683,585 | G→A | 39.6% | intergenic (‑138/+45) | dctA ← / ← yhjK | C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase |
| RA | 3,786,146 | C→T | 6.3% | T296I (ACC→ATC) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| MC JC | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,166,239 | A→G | 5.7% | Q271R (CAG→CGG) | murI → | glutamate racemase |
| RA | 4,177,171 | T→A | 6.9% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 6.4% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,296,060 | C→T | 35.3% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,479,020 | A→T | 5.3% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 761486 | 762748 | 1263 | 40 [39] | [38] 40 | [sucA]–sucB | [sucA],sucB |
| * | * | ÷ | NC_000913 | 3423741–3424234 | 3424544–3424238 | 5–804 | 44 [39] | [39] 41 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 224383 | NA (NA) | 3 (0.030) | 3/256 | NT | NA | noncoding (613/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 224395 | NA (NA) | noncoding (625/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 357562 | NA (NA) | 3 (0.030) | 3/250 | NT | NA | noncoding (79/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 357737 | NA (NA) | noncoding (54/79 nt) | REP28 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP28 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 580768 | 97 (1.040) | 6 (0.070) | 5/232 | NT | 6.0% | intergenic (‑323/‑66) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | = 580793 | 104 (1.270) | intergenic (‑348/‑41) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | = 696409 | NA (NA) | 4 (0.050) | 7/242 | NT | NA | intergenic (+133/+21) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| ? | NC_000913 | = 696413 | NA (NA) | intergenic (+137/+17) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln | |||||
| * | ? | NC_000913 | = 754909 | 87 (0.930) | 8 (0.090) | 8/262 | NT | 9.8% | intergenic (‑441/‑268) | gltA/sdhC | citrate synthase/succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| ? | NC_000913 | 760172 = | 61 (0.660) | coding (1467/2802 nt) | sucA | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding | |||||
| * | ? | NC_000913 | 1207790 = | 28 (0.300) | 43 (0.520) | 36/232 | NT | 57.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 38 (0.460) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 29 (0.310) | 30 (0.370) | 30/232 | NT | 48.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 38 (0.460) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1237689 = | 73 (0.780) | 4 (0.040) | 4/256 | NT | 5.5% | coding (119/1299 nt) | dadA | D‑amino acid dehydrogenase |
| ? | NC_000913 | 1237731 = | 67 (0.740) | coding (161/1299 nt) | dadA | D‑amino acid dehydrogenase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 140 (1.550) | 98/256 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1451450 = | 84 (0.900) | 4 (0.050) | 4/246 | NT | 5.1% | intergenic (‑101/+147) | tynA/paaZ | tyramine oxidase, copper‑requiring/oxepin‑CoA hydrolase and 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| ? | NC_000913 | 1451475 = | 70 (0.800) | intergenic (‑126/+122) | tynA/paaZ | tyramine oxidase, copper‑requiring/oxepin‑CoA hydrolase and 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase | |||||
| * | ? | NC_000913 | 1985101 = | 79 (0.850) | 4 (0.050) | 4/242 | NT | 5.3% | intergenic (‑32/+38) | araG/araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1985124 = | 72 (0.840) | intergenic (‑55/+15) | araG/araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1997022 = | 95 (1.020) | 5 (0.060) | 3/244 | NT | 5.3% | intergenic (‑190/+40) | sdiA/yecC | quorum‑sensing transcriptional activator/putative ABC transporter ATPase |
| ? | NC_000913 | 1997051 = | 91 (1.050) | intergenic (‑219/+11) | sdiA/yecC | quorum‑sensing transcriptional activator/putative ABC transporter ATPase | |||||
| * | ? | NC_000913 | 2297367 = | 81 (0.870) | 4 (0.040) | 4/258 | NT | 5.2% | coding (278/624 nt) | ccmA | heme export ABC transporter ATPase |
| ? | NC_000913 | 2297401 = | 66 (0.720) | coding (244/624 nt) | ccmA | heme export ABC transporter ATPase | |||||
| * | ? | NC_000913 | 2652246 = | 108 (1.160) | 6 (0.070) | 6/256 | NT | 5.5% | coding (42/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| ? | NC_000913 | 2652268 = | 101 (1.110) | coding (20/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein | |||||
| * | ? | NC_000913 | 2729443 = | 37 (0.400) | 3 (0.030) | 3/244 | NT | 8.0% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 2729485 = | 35 (0.410) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 3150551 = | NA (NA) | 4 (0.050) | 3/242 | NT | NA | intergenic (+5/+267) | yghA/exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
| ? | NC_000913 | 3150580 = | NA (NA) | noncoding (27/255 nt) | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | |||||
| * | ? | NC_000913 | = 3427065 | NA (NA) | 5 (0.060) | 4/246 | NT | NA | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913 | = 3427068 | NA (NA) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913 | = 3528142 | 85 (0.910) | 6 (0.070) | 5/244 | NT | 6.8% | coding (1674/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein |
| ? | NC_000913 | = 3528152 | 85 (0.980) | coding (1684/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein | |||||
| * | ? | NC_000913 | = 3943635 | NA (NA) | 4 (0.050) | 4/250 | NT | 5.9% | intergenic (+125/‑69) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037446 | 67 (0.720) | intergenic (+111/‑73) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 4209893 | 15 (0.160) | 3 (0.040) | 3/242 | NT | 17.9% | intergenic (+44/‑150) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon |
| ? | NC_000913 | = 4209911 | NA (NA) | intergenic (+62/‑132) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 4369146 = | 72 (0.770) | 5 (0.060) | 4/244 | NT | 7.1% | intergenic (+6/+10) | fxsA/yjeH | suppressor of F exclusion of phage T7/putative transporter |
| ? | NC_000913 | 4369185 = | 65 (0.750) | coding (1228/1257 nt) | yjeH | putative transporter | |||||