mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 315 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4636330 | 127 (0.930) | 10 (0.080) | 7/164 | NT | 7.5% | coding (324/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | = 4636367 | 129 (1.030) | coding (361/690 nt) | creB | response regulator in two‑component regulatory system with CreC | |||||
| * | ? | NC_000913 | = 4635629 | 155 (1.130) | 6 (0.050) | 4/166 | NT | 3.8% | coding (109/474 nt) | creA | putative periplasmic protein |
| ? | NC_000913 | = 4635693 | 161 (1.260) | coding (173/474 nt) | creA | putative periplasmic protein | |||||
| * | ? | NC_000913 | = 4629147 | 133 (0.970) | 14 (0.110) | 7/168 | NT | 9.9% | coding (1376/1668 nt) | ettA | energy‑dependent translational throttle A |
| ? | NC_000913 | = 4629161 | 128 (0.990) | coding (1362/1668 nt) | ettA | energy‑dependent translational throttle A | |||||
| * | ? | NC_000913 | 4628815 = | 153 (1.120) | 9 (0.070) | 8/164 | NT | 6.0% | noncoding (121/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | 4628845 = | 142 (1.130) | intergenic (+298/+10) | nadR/ettA | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor/energy‑dependent translational throttle A | |||||
| * | ? | NC_000913 | 4601057 = | 173 (1.270) | 9 (0.070) | 8/168 | NT | 5.3% | coding (461/540 nt) | dnaT | DNA biosynthesis protein (primosomal protein I) |
| ? | NC_000913 | 4601089 = | 157 (1.220) | coding (429/540 nt) | dnaT | DNA biosynthesis protein (primosomal protein I) | |||||
| * | ? | NC_000913 | = 4571450 | 155 (1.130) | 12 (0.090) | 6/166 | NT | 7.8% | coding (125/1413 nt) | yjiR | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| ? | NC_000913 | = 4571464 | 141 (1.110) | coding (111/1413 nt) | yjiR | putative DNA‑binding transcriptional regulator/putative aminotransferase | |||||
| * | ? | NC_000913 | = 4555370 | 165 (1.210) | 20 (0.170) | 9/158 | NT | 11.3% | intergenic (+21/+120) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein |
| ? | NC_000913 | = 4555379 | 167 (1.380) | intergenic (+30/+111) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein | |||||
| * | ? | NC_000913 | 4531468 = | 144 (1.050) | 15 (0.120) | 7/168 | NT | 10.3% | coding (184/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain |
| ? | NC_000913 | 4531508 = | 125 (0.970) | coding (144/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain | |||||
| * | ? | NC_000913 | = 4490231 | 156 (1.140) | 10 (0.080) | 9/170 | NT | 6.3% | coding (909/999 nt) | idnR | transcriptional repressor, 5‑gluconate‑binding |
| ? | NC_000913 | = 4490243 | 150 (1.150) | coding (897/999 nt) | idnR | transcriptional repressor, 5‑gluconate‑binding | |||||
| * | ? | NC_000913 | 4476539 = | 143 (1.050) | 7 (0.050) | 7/172 | NT | 4.9% | coding (1103/1815 nt) | yjgL | SopA‑central‑domain‑like hexapeptide repeat protein |
| ? | NC_000913 | 4476562 = | 135 (1.020) | coding (1126/1815 nt) | yjgL | SopA‑central‑domain‑like hexapeptide repeat protein | |||||