mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 29 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,652,803 | 0 | G | A | 44.4% | 183.7 / inf | 401 | A104T (GCA→ACA) | sseA | 3‑mercaptopyruvate sulfurtransferase |
| * | NC_000913 | 1,708,901 | 0 | A | C | 37.0% | 169.6 / 98.3 | 252 | R661R (CGA→CGC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 2,947,591 | 0 | A | . | 36.1% | 178.3 / 114.1 | 83 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| * | NC_000913 | 422,429 | 0 | T | G | 28.8% | 706.3 / 112.7 | 420 | intergenic (+70/‑89) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| * | NC_000913 | 1,708,805 | 0 | T | A | 27.9% | 136.0 / 39.0 | 179 | R629R (CGT→CGA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.0% | 730.1 / inf | 596 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,552,191 | 0 | C | A | 26.4% | 869.9 / 95.9 | 443 | intergenic (+200/+207) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| * | NC_000913 | 4,606,192 | 0 | G | C | 26.0% | 175.5 / 17.9 | 103 | intergenic (‑27/+8) | leuV/leuP | tRNA‑Leu/tRNA‑Leu |
| * | NC_000913 | 1,708,930 | 0 | C | A | 25.9% | 448.1 / 65.2 | 271 | P671Q (CCG→CAG) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 3,270,151 | 0 | A | C | 25.1% | 187.7 / 35.0 | 210 | intergenic (+549/+474) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| * | NC_000913 | 1,287,217 | 0 | G | T | 24.6% | 736.4 / 134.5 | 384 | intergenic (‑41/+27) | tpr/tyrV | protamine‑like protein/tRNA‑Tyr |
| * | NC_000913 | 422,432 | 0 | T | G | 23.7% | 894.4 / 77.0 | 420 | intergenic (+73/‑86) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| * | NC_000913 | 2,818,158 | 0 | T | A | 23.2% | 336.4 / 80.5 | 204 | intergenic (‑23/+40) | argZ/argY | tRNA‑Arg/tRNA‑Arg |
| * | NC_000913 | 422,435 | 0 | T | G | 23.1% | 904.8 / 70.9 | 420 | intergenic (+76/‑83) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| * | NC_000913 | 2,947,467 | 0 | A | C | 23.1% | 301.4 / 108.9 | 134 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | NC_000913 | 2,818,145 | 0 | T | C | 22.4% | 382.5 / 122.6 | 243 | intergenic (‑10/+53) | argZ/argY | tRNA‑Arg/tRNA‑Arg |
| * | NC_000913 | 4,412,781 | 0 | C | G | 22.1% | 1018.4 / 80.7 | 436 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | NC_000913 | 1,708,910 | 0 | G | C | 22.0% | 400.8 / 25.5 | 251 | A664A (GCG→GCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 1,708,880 | 0 | C | A | 21.6% | 353.2 / 37.3 | 220 | A654A (GCC→GCA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 935,551 | 0 | A | C | 21.4% | 496.2 / 42.6 | 296 | P776P (CCA→CCC) | ftsK | DNA translocase at septal ring sorting daughter chromsomes |
| Marginal new junction evidence (lowest skew 10 of 33 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 781577 = | 279 (0.620) | 242 (0.550) +GAAG |
55/292 | 23.3 | 52.5% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 170 (0.380) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 781369 = | 313 (0.690) | 145 (0.330) +GAAG |
55/292 | 23.3 | 38.2% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 170 (0.380) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | = 781446 | 252 (0.560) | 80 (0.200) | 46/260 | 23.6 | 21.1% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | 2521487 = | 380 (0.970) | intergenic (+159/+106) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913 | 780554 = | 480 (1.060) | 116 (0.260) +GAAG |
53/292 | 24.0 | 26.8% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 170 (0.380) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | = 1287084 | 170 (0.380) | 88 (0.220) | 42/260 | 25.2 | 28.0% | intergenic (+558/+3) | narI/tpr | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/protamine‑like protein |
| ? | NC_000913 | 1287557 = | 306 (0.780) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | 696863 = | 144 (0.320) | 83 (0.200) +GAAGAAACAATC |
30/276 | 32.4 | 24.0% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | NC_000913 | = 697134 | 429 (0.950) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | NC_000913 | 781369 = | 313 (0.690) | 139 (0.310) +GAG |
31/294 | 33.6 | 37.0% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 170 (0.380) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | = 2817942 | 309 (0.680) | 36 (0.090) | 24/260 | 34.1 | 10.6% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | NC_000913 | 2818492 = | 342 (0.870) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | NC_000913 | 781369 = | 313 (0.690) | 118 (0.260) +G |
30/298 | 34.4 | 35.5% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521128 | 118 (0.260) | intergenic (+2/‑45) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 781577 = | 278 (0.620) | 250 (0.560) +G |
28/298 | 35.5 | 56.2% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 115 (0.250) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||