breseq  version 0.27.1  revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence (highest frequency 20 of 29 shown)
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,708,9300CA34.3% 310.2 / 75.7 215P671Q (CCG→CAG) rsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
*NC_0009131,708,8050TA31.2% 95.4 / 37.2 146R629R (CGT→CGArsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
*NC_0009131,708,9010AC31.2% 189.6 / 55.8 208R661R (CGA→CGCrsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
*NC_0009132,947,5910A.29.6% 286.5 / 126.5 117intergenic (+18/‑16)metW/metVtRNA‑Met/tRNA‑Met
*NC_000913422,4290TG26.9% 738.2 / 82.4 405intergenic (+70/‑89)proY/malZproline‑specific permease/maltodextrin glucosidase
*NC_0009131,552,1910CA26.9% 890.0 / 101.8 447intergenic (+200/+207)fdnI/yddMformate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
*NC_000913935,5510AC25.9% 392.8 / 54.3 288P776P (CCA→CCCftsKDNA translocase at septal ring sorting daughter chromsomes
*NC_000913696,5340GT25.9% 311.5 / 39.2 144intergenic (‑30/+8)glnX/glnVtRNA‑Gln/tRNA‑Gln
*NC_0009134,606,1920GC25.8% 134.5 / 19.3 103intergenic (‑27/+8)leuV/leuPtRNA‑Leu/tRNA‑Leu
*NC_0009134,296,0600CT25.3% 791.7 / inf 605intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009132,947,4670AC25.2% 349.2 / 135.6 151intergenic (+4/‑30)metZ/metWtRNA‑Met/tRNA‑Met
*NC_0009133,269,9940GT24.1% 264.2 / 20.7 199intergenic (+392/+631)yhaC/garKpentapetide repeats‑related protein/glycerate kinase I
*NC_0009133,270,1510AC24.0% 212.2 / 28.1 221intergenic (+549/+474)yhaC/garKpentapetide repeats‑related protein/glycerate kinase I
*NC_000913915,2130AC23.3% 255.4 / 28.0 206intergenic (‑356/+139)ybjE/aqpZputative transporter/aquaporin Z
*NC_0009133,270,1670CG23.1% 398.4 / 40.7 279intergenic (+565/+458)yhaC/garKpentapetide repeats‑related protein/glycerate kinase I
*NC_0009131,708,9100GC23.0% 359.4 / 20.3 209A664A (GCG→GCCrsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
*NC_000913422,4320TG22.3% 907.9 / 61.9 405intergenic (+73/‑86)proY/malZproline‑specific permease/maltodextrin glucosidase
*NC_0009132,518,1500AT21.9% 641.9 / 62.2 335intergenic (‑34/+6)alaX/alaWtRNA‑Ala/tRNA‑Ala
*NC_0009132,518,1420CG21.7% 675.2 / 52.4 332intergenic (‑26/+14)alaX/alaWtRNA‑Ala/tRNA‑Ala
*NC_000913423,5520TG21.5% 682.4 / 55.6 322G345G (GGT→GGGmalZmaltodextrin glucosidase

Marginal new junction evidence (lowest skew 10 of 49 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =314 (0.690)58 (0.140) 53/268 15.6 17.0% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 288 (0.710)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 1207805328 (0.720)59 (0.150) 50/268 16.4 17.1% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 278 (0.690)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 781446238 (0.530)78 (0.200) 45/260 17.3 21.6% intergenic (+2/‑131) lysZ/lysQ tRNA‑Lys/tRNA‑Lys
?NC_000913 2521487 = 359 (0.920)intergenic (+159/+106) lysV/xapR tRNA‑Lys/transcriptional activator of xapAB
* ? NC_000913 781369 =273 (0.600)151 (0.340)
+GAAG
52/292 17.4 40.8% noncoding (1/76 nt) lysZ tRNA‑Lys
?NC_000913 = 2521006 178 (0.390)noncoding (76/76 nt) valU tRNA‑Val
* ? NC_000913 = 1287084190 (0.420)79 (0.200) 42/260 18.2 25.5% intergenic (+558/+3) narI/tpr nitrate reductase 1, gamma (cytochrome b(NR)) subunit/protamine‑like protein
?NC_000913 1287557 = 297 (0.760)noncoding (66/85 nt) tyrT tRNA‑Tyr
* ? NC_000913 781577 =310 (0.680)236 (0.540)
+GAAG
48/292 18.5 49.9% noncoding (1/76 nt) lysQ tRNA‑Lys
?NC_000913 = 2521006 178 (0.390)noncoding (76/76 nt) valU tRNA‑Val
* ? NC_000913 780554 =515 (1.140)111 (0.250)
+GAAG
48/292 18.5 24.8% noncoding (1/76 nt) lysT tRNA‑Lys
?NC_000913 = 2521006 178 (0.390)noncoding (76/76 nt) valU tRNA‑Val
* ? NC_000913 696863 =128 (0.280)68 (0.160)
+GAAGAAACAATC
37/276 20.9 20.9% intergenic (‑33/+2) glnW/glnU tRNA‑Gln/tRNA‑Gln
?NC_000913 = 697134 433 (0.960)intergenic (‑1/+379) metT/asnB tRNA‑Met/asparagine synthetase B
* ? NC_000913 = 2357690318 (0.700)67 (0.160)
+AATTAGAAGGTT
36/276 21.2 18.6% coding (787/900 nt) yfaD transposase_31 family protein
?NC_000913 2357691 = 318 (0.700)coding (788/900 nt) yfaD transposase_31 family protein
* ? NC_000913 781369 =273 (0.600)115 (0.260)
+G
39/298 21.6 37.2% noncoding (1/76 nt) lysZ tRNA‑Lys
?NC_000913 = 2521128 117 (0.260)intergenic (+2/‑45) valX/valY tRNA‑Val/tRNA‑Val