mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 29 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,708,930 | 0 | C | A | 34.3% | 310.2 / 75.7 | 215 | P671Q (CCG→CAG) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 1,708,805 | 0 | T | A | 31.2% | 95.4 / 37.2 | 146 | R629R (CGT→CGA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 1,708,901 | 0 | A | C | 31.2% | 189.6 / 55.8 | 208 | R661R (CGA→CGC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 2,947,591 | 0 | A | . | 29.6% | 286.5 / 126.5 | 117 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| * | NC_000913 | 422,429 | 0 | T | G | 26.9% | 738.2 / 82.4 | 405 | intergenic (+70/‑89) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| * | NC_000913 | 1,552,191 | 0 | C | A | 26.9% | 890.0 / 101.8 | 447 | intergenic (+200/+207) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| * | NC_000913 | 935,551 | 0 | A | C | 25.9% | 392.8 / 54.3 | 288 | P776P (CCA→CCC) | ftsK | DNA translocase at septal ring sorting daughter chromsomes |
| * | NC_000913 | 696,534 | 0 | G | T | 25.9% | 311.5 / 39.2 | 144 | intergenic (‑30/+8) | glnX/glnV | tRNA‑Gln/tRNA‑Gln |
| * | NC_000913 | 4,606,192 | 0 | G | C | 25.8% | 134.5 / 19.3 | 103 | intergenic (‑27/+8) | leuV/leuP | tRNA‑Leu/tRNA‑Leu |
| * | NC_000913 | 4,296,060 | 0 | C | T | 25.3% | 791.7 / inf | 605 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,947,467 | 0 | A | C | 25.2% | 349.2 / 135.6 | 151 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | NC_000913 | 3,269,994 | 0 | G | T | 24.1% | 264.2 / 20.7 | 199 | intergenic (+392/+631) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| * | NC_000913 | 3,270,151 | 0 | A | C | 24.0% | 212.2 / 28.1 | 221 | intergenic (+549/+474) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| * | NC_000913 | 915,213 | 0 | A | C | 23.3% | 255.4 / 28.0 | 206 | intergenic (‑356/+139) | ybjE/aqpZ | putative transporter/aquaporin Z |
| * | NC_000913 | 3,270,167 | 0 | C | G | 23.1% | 398.4 / 40.7 | 279 | intergenic (+565/+458) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| * | NC_000913 | 1,708,910 | 0 | G | C | 23.0% | 359.4 / 20.3 | 209 | A664A (GCG→GCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 422,432 | 0 | T | G | 22.3% | 907.9 / 61.9 | 405 | intergenic (+73/‑86) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| * | NC_000913 | 2,518,150 | 0 | A | T | 21.9% | 641.9 / 62.2 | 335 | intergenic (‑34/+6) | alaX/alaW | tRNA‑Ala/tRNA‑Ala |
| * | NC_000913 | 2,518,142 | 0 | C | G | 21.7% | 675.2 / 52.4 | 332 | intergenic (‑26/+14) | alaX/alaW | tRNA‑Ala/tRNA‑Ala |
| * | NC_000913 | 423,552 | 0 | T | G | 21.5% | 682.4 / 55.6 | 322 | G345G (GGT→GGG) | malZ | maltodextrin glucosidase |
| Marginal new junction evidence (lowest skew 10 of 49 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 314 (0.690) | 58 (0.140) | 53/268 | 15.6 | 17.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 288 (0.710) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 328 (0.720) | 59 (0.150) | 50/268 | 16.4 | 17.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 278 (0.690) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 781446 | 238 (0.530) | 78 (0.200) | 45/260 | 17.3 | 21.6% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | 2521487 = | 359 (0.920) | intergenic (+159/+106) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913 | 781369 = | 273 (0.600) | 151 (0.340) +GAAG |
52/292 | 17.4 | 40.8% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 178 (0.390) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | = 1287084 | 190 (0.420) | 79 (0.200) | 42/260 | 18.2 | 25.5% | intergenic (+558/+3) | narI/tpr | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/protamine‑like protein |
| ? | NC_000913 | 1287557 = | 297 (0.760) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | 781577 = | 310 (0.680) | 236 (0.540) +GAAG |
48/292 | 18.5 | 49.9% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 178 (0.390) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 780554 = | 515 (1.140) | 111 (0.250) +GAAG |
48/292 | 18.5 | 24.8% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 178 (0.390) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 696863 = | 128 (0.280) | 68 (0.160) +GAAGAAACAATC |
37/276 | 20.9 | 20.9% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | NC_000913 | = 697134 | 433 (0.960) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | NC_000913 | = 2357690 | 318 (0.700) | 67 (0.160) +AATTAGAAGGTT |
36/276 | 21.2 | 18.6% | coding (787/900 nt) | yfaD | transposase_31 family protein |
| ? | NC_000913 | 2357691 = | 318 (0.700) | coding (788/900 nt) | yfaD | transposase_31 family protein | |||||
| * | ? | NC_000913 | 781369 = | 273 (0.600) | 115 (0.260) +G |
39/298 | 21.6 | 37.2% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521128 | 117 (0.260) | intergenic (+2/‑45) | valX/valY | tRNA‑Val/tRNA‑Val | |||||