mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 93 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,669,838 | 0 | T | C | 73.9% | 78.9 / 28.6 | 46 | V92A (GTT→GCT) | hcaC | 3‑phenylpropionate dioxygenase, predicted ferredoxin subunit |
| * | W3110S.gb | 3,861,751 | 0 | T | C | 73.3% | 160.8 / 61.2 | 90 | N423S (AAC→AGC) | lldP | L‑lactate permease |
| * | W3110S.gb | 47,828 | 0 | A | G | 73.1% | 88.6 / 34.5 | 53 | V20V (GTA→GTG) | kefC | potassium:proton antiporter |
| * | W3110S.gb | 4,528,968 | 0 | A | G | 73.0% | 61.4 / 22.0 | 37 | L242P (CTA→CCA) | yjhH | predicted lyase/synthase |
| * | W3110S.gb | 1,426,674 | 0 | T | C | 72.4% | 93.3 / 41.1 | 58 | D393D (GAT→GAC) | trkG | potassium transporter subunit |
| * | W3110S.gb | 2,777,419 | 1 | . | A | 72.4% | 58.1 / 26.5 | 29 | coding (3964/4581 nt) | ypjA | adhesin‑like autotransporter |
| * | W3110S.gb | 3,628,104 | 0 | G | A | 72.2% | 52.7 / 25.0 | 36 | V161V (GTG→GTA) | rhtB | neutral amino‑acid efflux system |
| * | W3110S.gb | 1,728,624 | 0 | G | A | 70.0% | 38.5 / 21.4 | 30 | W84* (TGG→TGA) | nemA | N‑ethylmaleimide reductase, FMN‑linked |
| * | W3110S.gb | 2,866,401 | 0 | G | A | 67.5% | 44.2 / 35.2 | 40 | Q337* (CAA→TAA) | nlpD | predicted outer membrane lipoprotein |
| * | W3110S.gb | 2,204,480 | 0 | T | C | 66.7% | 17.1 / 12.4 | 18 | Y290H (TAT→CAT) | yehI | conserved hypothetical protein |
| * | W3110S.gb | 1,461,479 | 0 | G | A | 63.4% | 32.2 / 42.4 | 41 | G238S (GGT→AGT) | paaH | 3‑hydroxybutyryl‑CoA dehydrogenase |
| * | W3110S.gb | 1,495,966 | 1 | . | T | 62.0% | 82.6 / 71.6 | 50 | coding (820/924 nt) | ydcI | predicted DNA‑binding transcriptional regulator |
| * | W3110S.gb | 3,566,303 | 0 | T | C | 59.3% | 13.6 / 28.7 | 27 | C8C (TGT→TGC) | yihR | predicted aldose‑1‑epimerase |
| * | W3110S.gb | 2,971,401 | 0 | A | T | 58.8% | 30.2 / 62.3 | 51 | V373E (GTG→GAG) | ygeD | predicted inner membrane protein |
| * | W3110S.gb | 2,874,461 | 0 | A | G | 54.9% | 13.9 / 67.8 | 51 | I175I (ATT→ATC) | cysD | sulfate adenylyltransferase, subunit 2 |
| * | W3110S.gb | 2,885,984 | 0 | C | T | 53.6% | 8.7 / 99.6 | 69 | intergenic (‑109/+250) | ygcB/cysH | conserved hypothetical protein, member of DEAD box family/3'‑phosphoadenosine 5'‑phosphosulfate reductase |
| * | W3110S.gb | 2,504,884 | 0 | T | C | 52.2% | ‑2.1 / 29.9 | 23 | V256V (GTT→GTC) | ypdA | predicted sensory kinase in two‑component system with YpdB |
| * | W3110S.gb | 1,032,491 | 0 | C | T | 50.0% | ‑5.3 / 30.2 | 22 | intergenic (‑357/‑70) | serT/hyaA | tRNA‑Ser/hydrogenase 1, small subunit |
| * | W3110S.gb | 2,239,880 | 0 | T | G | 50.0% | 3.3 / 13.7 | 14 | intergenic (+46/+197) | yeiA/mglC | predicted oxidoreductase/methyl‑galactoside transporter subunit |
| * | W3110S.gb | 4,547,402 | 0 | T | . | 48.0% | 66.0 / 95.2 | 50 | intergenic (+87/‑395) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |