mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 68 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2857675 = | 94 (0.950) | 3 (0.030) | 3/238 | NT | 3.4% | coding (90/96 nt) | USA300HOU_2700 | hypothetical protein |
| ? | CP000730 | 2857737 = | 84 (0.920) | coding (28/96 nt) | USA300HOU_2700 | hypothetical protein | |||||
| * | ? | CP000730 | = 2850830 | 103 (1.040) | 4 (0.050) | 4/230 | NT | 3.9% | intergenic (+29/+90) | pcp/USA300HOU_2693 | C15 family pyroglutamyl‑peptidase I/hypothetical protein |
| ? | CP000730 | = 2850851 | 104 (1.180) | intergenic (+50/+69) | pcp/USA300HOU_2693 | C15 family pyroglutamyl‑peptidase I/hypothetical protein | |||||
| * | ? | CP000730 | 2830190 = | 112 (1.130) | 3 (0.030) | 3/236 | NT | 3.1% | intergenic (+18/+173) | icaC/USA300HOU_2670 | intercellular adhesion protein C/hypothetical protein |
| ? | CP000730 | 2830247 = | 83 (0.920) | intergenic (+75/+116) | icaC/USA300HOU_2670 | intercellular adhesion protein C/hypothetical protein | |||||
| * | ? | CP000730 | 2793464 = | 132 (1.330) | 3 (0.030) | 3/238 | NT | 2.5% | coding (2179/2982 nt) | pip | possible bacteriophage infection protein |
| ? | CP000730 | 2793513 = | 111 (1.210) | coding (2130/2982 nt) | pip | possible bacteriophage infection protein | |||||
| * | ? | CP000730 | = 2682927 | 117 (1.180) | 4 (0.040) | 3/240 | NT | 3.5% | intergenic (‑106/‑148) | mvaA/mvaS | hydroxymethylglutaryl‑CoA reductase/hydroxymethylglutaryl‑CoA synthase |
| ? | CP000730 | = 2682968 | 115 (1.250) | intergenic (‑147/‑107) | mvaA/mvaS | hydroxymethylglutaryl‑CoA reductase/hydroxymethylglutaryl‑CoA synthase | |||||
| * | ? | CP000730 | 2679162 = | 111 (1.120) | 3 (0.030) | 3/246 | NT | 2.7% | intergenic (+34/‑355) | USA300HOU_2535/cbpD | hypothetical protein/possible secretory antigen |
| ? | CP000730 | 2679186 = | 107 (1.130) | intergenic (+58/‑331) | USA300HOU_2535/cbpD | hypothetical protein/possible secretory antigen | |||||
| * | ? | CP000730 | = 2674542 | 116 (1.170) | 3 (0.030) | 3/238 | NT | 2.8% | intergenic (‑21/+247) | ptsG/ilvB2 | PTS family glucose/glucoside (glc) porter component IIABC/pyruvate oxidase |
| ? | CP000730 | = 2674577 | 100 (1.090) | intergenic (‑56/+212) | ptsG/ilvB2 | PTS family glucose/glucoside (glc) porter component IIABC/pyruvate oxidase | |||||
| * | ? | CP000730 | = 2670076 | 101 (1.020) | 3 (0.030) | 3/234 | NT | 3.0% | intergenic (+13/+69) | yicL/USA300HOU_2525 | DMT superfamily drug/metabolite transporter/esterase |
| ? | CP000730 | = 2670127 | 101 (1.120) | intergenic (+64/+18) | yicL/USA300HOU_2525 | DMT superfamily drug/metabolite transporter/esterase | |||||
| * | ? | CP000730 | 2579488 = | 98 (0.990) | 3 (0.030) | 3/244 | NT | 3.0% | coding (761/1638 nt) | ybeC | APC family amino acid‑polyamine‑organocation transporter |
| ? | CP000730 | 2579549 = | 102 (1.090) | coding (822/1638 nt) | ybeC | APC family amino acid‑polyamine‑organocation transporter | |||||
| * | ? | CP000730 | 2545705 = | 105 (1.060) | 3 (0.030) | 3/234 | NT | 3.3% | intergenic (+6/+46) | hlgB/USA300HOU_2406 | gamma hemolysin component B/hypothetical membrane protein |
| ? | CP000730 | 2545745 = | 78 (0.870) | intergenic (+46/+6) | hlgB/USA300HOU_2406 | gamma hemolysin component B/hypothetical membrane protein | |||||