mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 74 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 202,485 | 0 | T | . | 71.6% | 282.4 / inf | 297 | intergenic (+263/‑412) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 437,880 | 2 | . | T | 63.1% | 889.8 / inf | 415 | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 437,880 | 1 | . | A | 63.0% | 852.1 / inf | 415 | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 203,895 | 1 | . | T | 61.3% | 1078.7 / inf | 551 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 165,250 | 0 | T | . | 59.9% | 413.4 / inf | 1059 | intergenic (+214/‑328) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 202,486 | 0 | T | . | 55.1% | 219.8 / inf | 298 | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,494 | 0 | A | T | 54.2% | 2.0 / 247.6 | 307 | intergenic (+272/‑403) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 105,339 | 0 | T | G | 54.1% | 835.3 / 293.4 | 856 | intergenic (+834/+92) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 202,477 | 0 | C | A | 46.5% | 245.3 / 166.5 | 373 | intergenic (+255/‑420) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 437,880 | 4 | . | T | 42.4% | 94.5 / inf | 415 | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 437,880 | 3 | . | A | 42.3% | 97.5 / inf | 415 | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 420,253 | 0 | C | A | 41.8% | 1017.1 / inf | 1111 | intergenic (‑536/+307) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 203,912 | 0 | G | T | 38.7% | 810.5 / 197.2 | 677 | intergenic (+296/+162) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,481 | 0 | C | A | 34.5% | 317.3 / 53.2 | 328 | intergenic (+259/‑416) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 76,878 | 0 | G | T | 34.3% | 2204.8 / 254.1 | 1256 | intergenic (‑127/+58) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein |
| * | CP016816 | 203,952 | 0 | C | A | 34.2% | 1326.5 / 176.4 | 852 | intergenic (+336/+122) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,462 | 0 | C | A | 34.2% | 679.4 / 98.7 | 485 | intergenic (+240/‑435) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,460 | 0 | C | A | 33.8% | 629.1 / 69.0 | 487 | intergenic (+238/‑437) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,946 | 0 | C | A | 32.3% | 1359.9 / 129.8 | 841 | intergenic (+330/+128) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 203,937 | 0 | C | A | 32.2% | 1255.4 / 102.8 | 804 | intergenic (+321/+137) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| Marginal new junction evidence (lowest skew 10 of 152 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | = 437880 | 149 (0.120) | 538 (0.360) +ATAT |
145/188 | 3.9 | 72.0% | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437881 = | 241 (0.160) | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 437881 = | 370 (0.240) | 516 (0.410) | 152/204 | 4.7 | 68.5% | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437884 | 174 (0.140) | intergenic (‑188/+234) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 165253 = | 1165 (0.760) | 215 (0.160) | 100/220 | 16.1 | 18.1% | intergenic (+217/‑325) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | = 165249 | 932 (0.690) | intergenic (+213/‑329) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | 437881 = | 484 (0.310) | 375 (0.290) | 82/212 | 19.3 | 50.3% | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437888 | 334 (0.260) | intergenic (‑192/+230) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | = 203895 | 391 (0.290) | 214 (0.140) +TTT |
65/214 | 24.1 | 32.7% | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| ? | CP016816 | 203896 = | 453 (0.290) | intergenic (+280/+178) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase | |||||
| * | ? | CP016816 | = 202486 | 124 (0.080) | 268 (0.170) | 69/252 | 26.8 | 66.3% | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| ? | CP016816 | 202490 = | 148 (0.100) | intergenic (+268/‑407) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein | |||||
| * | ? | CP016816 | = 437908 | 405 (0.260) | 404 (0.270) +ATAA |
66/244 | 26.9 | 50.7% | intergenic (‑212/+210) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437909 = | 405 (0.260) | intergenic (‑213/+209) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | = 202483 | 150 (0.100) | 235 (0.150) | 52/252 | 31.9 | 62.0% | intergenic (+261/‑414) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| ? | CP016816 | 202487 = | 138 (0.090) | intergenic (+265/‑410) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein | |||||
| * | ? | CP016816 | 117946 = | 1754 (1.140) | 52 (0.040) | 41/212 | 31.9 | 3.5% | intergenic (+67/+792) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease |
| ? | CP016816 | = 117942 | 1416 (1.100) | intergenic (+63/+796) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease | |||||
| * | ? | CP016816 | = 311170 | 97 (0.060) | 75 (0.050) | 47/252 | 33.6 | 44.4% | intergenic (‑93/‑221) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | 311174 = | 91 (0.060) | intergenic (‑97/‑217) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||