Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A29 F71 I1 R1 22 78.5 2942462 91.4% 2689410 142.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 760,485 G→A G594S (GGC→AGC)  sucA → subunit of E1(0) component of 2‑oxoglutarate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913760,4850GA96.0% 217.6 / NA 76G594S (GGC→AGC) sucAsubunit of E1(0) component of 2‑oxoglutarate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (33/40);  minor base C (1/2);  total (34/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CAAAGTTGAGATGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGGGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACTTACAC  >  NC_000913/760346‑760624
                                                                                                                                           |                                                                                                                                           
cAAAGTTGAGATGAAGCTCCTGCAGGAGCTGGCGAAACTCTTTATCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATGTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCg                                                                                                                                          <  1:292802/143‑1 (MQ=255)
cAAAGTTGAGATGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCg                                                                                                                                          <  2:1148987/143‑1 (MQ=255)
 aaaGTTGAGATGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCgg                                                                                                                                         >  1:1319941/1‑143 (MQ=255)
     ttGAGATGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCg                                                                                                                                     <  1:1290562/143‑1 (MQ=255)
     tggagaGGAAGCGCCTGCAGGGGGGGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAAGGCAGTCGCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCg                                                                                                                                     <  2:1364919/141‑1 (MQ=255)
          aTGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCGGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTACGACTGGAGCGGCGCGGaaaa                                                                                                                                >  2:1447342/1‑143 (MQ=255)
            gAAGCGCCTGCAGGAGCTGGCGAAACGCATAAGGACGGTGCCGGAAGCAGTTGAAATGCAGTGTAGCGTTGCCAATAGTAACAGTAATTTCCATTCGATGGCTGCCGGTGAGAAACTGTTCGACTTGAGCGGTGCGGAAAAcc                                                                                                                              <  2:1429631/143‑1 (MQ=255)
              aGCGCCTGCGGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGCTGAAATGCAGTCTAGCACTTCGTAGATTTATGGCGATCGCCAGGCGATGGCTGCCTGTGCGAAACTGTTTTACTGGAGCGGTGCGGAAAACCTc                                                                                                                            <  2:795674/143‑1 (MQ=255)
               gcgcCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCg                                                                                                                           <  2:1222450/143‑1 (MQ=255)
                   cTGCAGGAGCTGGCGAAACGCATCAGCACGGTGGCGGAAGCAGCTGAAATGCAGTCTCGCGTTGCCAAGATTTAAGGCGATCGCCAGGCGATGGCTGCCACTGAGAAACTGTTCCACTGGAGCGGTGCGGAAAACCTccccca                                                                                                                       >  1:101625/1‑138 (MQ=255)
                   cTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCGCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGCGCGGTGCGCAAAACCTCGCTTa                                                                                                                       >  2:421536/1‑143 (MQ=255)
                     ccAGGAGCGGGCGAACCGCCTCAGCACGGTGCCGCAAGCCGTCGAACTGCAGCCACGCGTTGCCCCGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGCAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACg                                                                                                                     <  2:970878/142‑1 (MQ=255)
                       aGGAGCTAGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAACTGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGGAACTGTCCGACTGGAGCGGAGCGCGAAACCTCGCGTCCGcg                                                                                                                   >  2:1447804/1‑142 (MQ=255)
                        ggAGCGGGCGAAACGCGCCAGCACGGTGCCGGAAGGAGTTGAAATGCAGTCTCGCGTTGCCAAGAGTTATGGCGATCGCCAGGGGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCa                                                                                                                  <  1:423333/143‑1 (MQ=255)
                          ctcgtgCGAAACGCATCAGAACGGTGTCGCAAGCAGTTGAAATGCATTCTCGCGTTGCCAAGATTTATGTCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACg                                                                                                                <  1:1194108/138‑1 (MQ=255)
                             tGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACATCGCTTACGCCACGCTg                                                                                                             >  1:1301680/1‑143 (MQ=255)
                               gatctaCGCACCACCGCGGCGCCCGTCGCTGTTGTAATGCAGTCTCGCGTTGCCAAGCTTTAGGGCGATCGCGGGGCGATGGCTGCTGGTGAGAAACGGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGt                                                                                                           <  2:461412/138‑1 (MQ=255)
                               ccGAAAAGCATCAGCACGGTGCCGGAACCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTACGGCGATCGCCAGGCGATGGCTGCGGGTCAGAAACGGTTCGACTGGAGCGGTGCGGTAAACCTCGCTTACGCCACGCTGGt                                                                                                           <  1:154549/142‑1 (MQ=255)
                                   aaCGTATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTtgat                                                                                                       <  1:1392432/143‑1 (MQ=255)
                                      ggaTCAGCACGGGGCCGGAAGCAGTTGAAATGCAGTCGCGCGTCGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGaa                                                                                                    <  2:1001082/141‑1 (MQ=255)
                                      gCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGaa                                                                                                    <  1:1367724/143‑1 (MQ=255)
                                      gCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGaa                                                                                                    >  1:1164190/1‑143 (MQ=255)
                                      gCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGaa                                                                                                    <  2:147480/143‑1 (MQ=255)
                                       cATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGCTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAGCTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAg                                                                                                   >  1:211373/1‑143 (MQ=255)
                                         tCAGCACGGGGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCTATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGc                                                                                                 <  1:335966/143‑1 (MQ=255)
                                          cAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCACGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCa                                                                                                >  1:311430/1‑143 (MQ=255)
                                           aGCACGGTGCCGGAAGCAGGTGAAATGCAGTCTCGCGTGGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCAt                                                                                               <  1:864439/143‑1 (MQ=255)
                                               cGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCg                                                                                           <  1:856882/143‑1 (MQ=255)
                                                 gTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGGTGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTCCGCCACCCTGGTTGATGAAGGCATTCCGGt                                                                                         >  1:249220/1‑143 (MQ=255)
                                                     cGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGc                                                                                     <  1:578558/143‑1 (MQ=255)
                                                      ggAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGCACACCTCGCTTACGCCCCGCTGGTTGATGAAGGCATTCCGGTTCGcc                                                                                    >  1:563394/1‑143 (MQ=255)
                                                       ggaggaGTTGAGATGCAGTCTCGCGTTGCCGAGGTTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCt                                                                                   <  2:1113241/138‑1 (MQ=255)
                                                       gAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCGCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCt                                                                                   >  1:673153/1‑143 (MQ=255)
                                                                 aaaTGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGaa                                                                         <  1:257214/143‑1 (MQ=255)
                                                                  aaTGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAg                                                                        >  1:1034390/1‑143 (MQ=255)
                                                                   aTGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGgaga                                                                       >  1:980878/1‑143 (MQ=255)
                                                                         tctcGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGCAGGCCTTCCGGTTCGCCTGTCGGGTGAAGACTCCgg                                                                 >  2:686378/1‑143 (MQ=255)
                                                                         tctcGCGTTGCCAAGATGTCTGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCgg                                                                 <  2:1164190/143‑1 (MQ=255)
                                                                              cggtGCGAAGATCGATGGCGCTCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTTCGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTcgcg                                                            <  2:1408826/140‑1 (MQ=255)
                                                                                 tGCCAAGGTTTGTGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTa                                                         <  2:471874/143‑1 (MQ=255)
                                                                                  gcgaaGGTTTATGGCGAGCGCCAGGCGAGGGCTGCCGGCGAGAAACTGTTCGACTGGAGCGGTGCGGACAACCTCTCGTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTAc                                                        <  2:631376/140‑1 (MQ=255)
                                                                                  gCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTAc                                                        <  2:1319941/143‑1 (MQ=255)
                                                                                   ccAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAGGCTGGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTAcc                                                       >  2:174292/1‑143 (MQ=255)
                                                                                   ccAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTAcc                                                       >  1:966273/1‑143 (MQ=255)
                                                                                   ccAAGATATACGGCGATCGCCAGGCGATGGATGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTAcc                                                       <  1:13989/143‑1 (MQ=255)
                                                                                    cAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACct                                                      >  2:617132/1‑143 (MQ=255)
                                                                                     aaGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTTGGGTGAAGACTCCGGTCGCGGTACctt                                                     >  1:1183356/1‑143 (MQ=255)
                                                                                          ttATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGCCTGGAGCGGTGCGGAACACCTCGCTGACGCCACGCTGGTTGAGGAAGGGATTCCGGCTCGCCGGACGGGTGAAGAGTCGGGTCGCGGTACGTTCTTcc                                                >  2:554249/1‑143 (MQ=255)
                                                                                          ttATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTGCGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGAGTACGGTCGCCGTACCTTCTTcc                                                >  1:41917/1‑143 (MQ=255)
                                                                                          ttATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTATTCGACTGGAGCCGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCCGTCGGCTGCAGACTCCGGTCGCGCTACCTTCTTcc                                                >  2:687972/1‑143 (MQ=255)
                                                                                               gCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCCCCGc                                           >  1:96080/1‑143 (MQ=255)
                                                                                               gCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGc                                           >  2:1055705/1‑143 (MQ=255)
                                                                                               gCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGc                                           >  1:1112280/1‑143 (MQ=255)
                                                                                                 gATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCa                                         <  1:1182763/143‑1 (MQ=255)
                                                                                                  agcggcAGGCGATGGCGGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCAc                                        <  1:6015/138‑1 (MQ=255)
                                                                                                        aGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGGGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCgggg                                  >  1:882820/1‑141 (MQ=255)
                                                                                                         ggCGATGGCTGCCGGTGAGAAGCTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGa                                 <  2:211373/143‑1 (MQ=255)
                                                                                                         ggCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTTGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGa                                 <  1:1401864/143‑1 (MQ=255)
                                                                                                          gCGATGGCTGCCGGTGAGAATCTGTTCGACTGGAGTGGTGTGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGAt                                <  1:1118539/143‑1 (MQ=255)
                                                                                                               ggCTGCCGGTGGGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTGGATGAAGGCATTCCGGTTCGCCTGTCGGGCGAAGACTCCGGTCGGGGGACCTTCCTCCACCCCCACGCGGTGCACcaca                           >  2:1292294/1‑143 (MQ=255)
                                                                                                                 cTGCCGGTCGGGTACTGTTCGACTGGAGCGGTGCGGAAATCCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAAc                         <  2:1256743/143‑1 (MQ=255)
                                                                                                                  tGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAAcc                        >  2:504072/1‑143 (MQ=255)
                                                                                                                   gCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCa                       <  1:1113229/143‑1 (MQ=255)
                                                                                                                          agcaaCCGTTCTACTTGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGTCATTCCGTTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAAc                <  2:134707/140‑1 (MQ=255)
                                                                                                                          agaAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAAc                <  1:974065/143‑1 (MQ=255)
                                                                                                                          agaAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGGGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGAGCCACAACCAGTCTAAc                >  1:250535/1‑143 (MQ=255)
                                                                                                                           gaAGCTGTTCGGCTGGCGCGGTGCGGAAAGCCTCGCTTGCGCGACGCTGGTTGATGAAGGCATTCCGGTGCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACg               <  2:1321239/143‑1 (MQ=255)
                                                                                                                            aaaCTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTCACgg              >  1:278056/1‑143 (MQ=255)
                                                                                                                            aaaCTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACgg              >  1:870230/1‑143 (MQ=255)
                                                                                                                                tGTTCGCCTGGCGCGGGGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTTGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTcc          <  2:552042/143‑1 (MQ=255)
                                                                                                                                  ttCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCGAACGGTTCCAc        >  2:857220/1‑143 (MQ=255)
                                                                                                                                  ttCGACTGGAGCGGTGCGGAAAACCGCGCTTGCGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCAc        <  2:193427/143‑1 (MQ=255)
                                                                                                                                  ttCGACTGGAGCGGAGCGGAAAACCTCGCTTACGNCACGCTNGTCGAGNGAGGCAGCCCAGTTCGCCNGCCGGGTGAAGACACCGGTCGCGGGACCTNCTTCAAACCGCACGCGGCGATCCCACACCAGTCTACCGGTGCCAc        >  2:974273/1‑143 (MQ=255)
                                                                                                                                    cGACTGGAGCGGTGCGGAAGACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACtt      <  2:665589/143‑1 (MQ=255)
                                                                                                                                       cTGGAGCGGTGCGGAAACCCTCGCTTACGCCAGGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACTTaca   <  2:1015897/143‑1 (MQ=255)
                                                                                                                                        tGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACTTacac  >  1:913250/1‑143 (MQ=255)
                                                                                                                                           |                                                                                                                                           
CAAAGTTGAGATGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGGGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACTTACAC  >  NC_000913/760346‑760624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A