Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A21 F21 I0 R1
|
92 |
47.7 |
1834152 |
89.2% |
1636063 |
142.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
760,485 |
G→A |
100% |
G594S (GGC→AGC) |
sucA → |
subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 760,485 | 0 | G | A | 100.0%
| 136.7
/ ‑6.7
| 55 | G594S (GGC→AGC) | sucA | subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (30/24); minor base C (1/0); total (31/24) |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TTGAGATGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGGGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACTTACAC > NC_000913/760351‑760624
|
ttGAGATGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCg > 1:776004/1‑143 (MQ=255)
gaTGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGaca > 2:133486/1‑141 (MQ=255)
gcgcCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCGGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCg > 1:516537/1‑143 (MQ=255)
gcgcCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCTTTGAGGAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCg > 2:886288/1‑143 (MQ=255)
ggcCTGCAGGAGCGGGCGAAACGCATCAGCACGGTGCCGGAAGCAGGTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGAGCGGCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGc < 2:722264/142‑1 (MQ=255)
ccTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGCTCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCtt > 2:132422/1‑143 (MQ=255)
gCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACg < 2:699297/143‑1 (MQ=255)
cAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGGTTTATGGCGATCGCCAGGCGATGGCTGGCGGTGAGAAAGTGGTCGCCTGGAGCGGTGCGGAAAAC‑CCCGCTAACGc > 2:101071/1‑143 (MQ=255)
cAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGc < 2:697372/143‑1 (MQ=255)
gAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGACCGGTGCGGTAAAC‑CTCGCTTACGCCAc > 1:483811/1‑143 (MQ=255)
cTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAG‑CTCGCTTACGCCAGGCt > 2:906594/1‑143 (MQ=255)
tGGCGAGACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTg < 1:752947/143‑1 (MQ=255)
ggataCGCATCAGCACGGTGCCGGAAGGAGTTGAGATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGtt < 2:388473/139‑1 (MQ=255)
aaaCGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTtga > 1:900261/1‑143 (MQ=255)
gCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACAGTACGACCGTAGTTGTGTTTAAAAC‑CTCGCTTACGCCACGCTGGTTGATGaa < 1:172532/143‑1 (MQ=255)
cATCAGCACGGGGCCGGAAGCGGTTGACAGGCAGCCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAGC‑CTCGCTTACGCCACGCTGGTTGATGAAg < 1:470581/143‑1 (MQ=255)
tCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAGAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGc > 1:236098/1‑143 (MQ=255)
cAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCa > 1:759862/1‑143 (MQ=255)
gCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGGTTTATAGCGATGGCGAGGCGATGGGTGCCGGTGAGAAACTGTTCGACTCGAGCGGTCCGGAAAAC‑CTCGCATACGCCACGCGGCTTGaggcaggcgct > 2:344138/1‑140 (MQ=255)
gCACGGTGCCGGAAGCAGTTGAAATGCAGTCACGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CACGCGTACGCCACGCAGGTCGAGGGAGGCAtt > 2:380531/1‑143 (MQ=255)
ggTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACACTGGTTGATGAAGGCATTCCgg > 1:424402/1‑143 (MQ=255)
ccGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCg > 2:168899/1‑143 (MQ=255)
gggAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTGATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGc < 1:848979/142‑1 (MQ=255)
gTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCggg > 2:440082/1‑143 (MQ=255)
ttGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACGCATCCGTATG‑CGCTCGGGTCGATTGAGGCATTCCGGTTAGCCTGTAGGGt > 2:786840/1‑143 (MQ=255)
ttGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGt < 1:886288/143‑1 (MQ=255)
tGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGAc > 2:280599/1‑143 (MQ=255)
tGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGAc > 1:192695/1‑143 (MQ=255)
tgtggcgTTGCCAAGAGTGAGGGCGATCGCCAGGCGATGGCGTCCGTTGAGAAACTGTTCGACTGGAGCGGGGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCgg < 1:512327/139‑1 (MQ=255)
tctcGCGTTGCCAAGATTTCTGGCGATCGCCAGGCGATGGCTGGCGGTGAGAAACTGTTGGACTGGCGCGGCGCGGGGAGC‑CTCGCTGACGCCACGCTGGTTGCTGAAGGCAGTCCGGTTGGCCTGCCGGGTGCAgcggccgg > 2:64417/1‑136 (MQ=255)
tctcGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGGGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCgg > 2:11358/1‑143 (MQ=255)
tctcGCCTGGCCAAGATTTATGGCGATCGCCAGGCGCTGGCTGCCGGCGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCgg < 1:7254/143‑1 (MQ=255)
cgcgTTGCCCGGATTTAGGGCGGTCGCCAGGCGGTGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAATC‑CTCGCTTACGCCACGCTGGTTGATGAGGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTcg < 2:734883/143‑1 (MQ=255)
cgTTGTCATGATTTAAGGTGTAAGCCAGGGGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTcgcg < 1:702880/143‑1 (MQ=255)
tGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTa < 2:89524/143‑1 (MQ=255)
cAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTCCct > 2:259754/1‑143 (MQ=255)
aTGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCAc < 1:627535/143‑1 (MQ=255)
agccaTCGCCTGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGGTTATGAAGGCATTCCGGTTCGCCTGTCGGGTGACGACTCCGGTCGCGGTACCTTCTTCCACCg > 1:464539/5‑143 (MQ=255)
tCGCCAGGCGCTGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGCTCGCCTGTCGGGCGGAGACCCCGGTCGCGGTCCGTTCTTTCACCGCCAcg > 1:60203/1‑143 (MQ=255)
cGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCAcgc < 1:440082/143‑1 (MQ=255)
ggCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGa < 1:133486/143‑1 (MQ=255)
ggCGATGGCTGCCGGTGAGAAACTGTTCGACGGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGCGGGAGGCATTCCGGTTCGCCTGCCGGGGAACGACTCCGGACGAGGCACCTTCTCCCCCCGCCCcgcgcgca > 2:421271/1‑139 (MQ=255)
cggtGGCTGCCGGTGGGAAACTGTTCGTCGGGAGTGGTGCGGCAGTC‑CTCGCTTACGCCACGCTGGTTGATGAACGCCTTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATc < 2:435872/140‑1 (MQ=255)
cggcgcacGGTGAGAAACTGCTCGACTGGAGCGGTGCGGAACAC‑CTCGCCTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCAGCTACAGACTCCGGTCTCGGTACTTTCTTCCACCGCCACGCGGTGATCcac < 1:251598/136‑1 (MQ=255)
ggTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGACGGCATTCCGCTTCGCCTGTCCGGTGCAGACTCCGGTCGCGGTACCTTCTTCCCCCGCCACGCGGTGGTCCCCACCCGGTc > 1:227087/1‑143 (MQ=255)
ggTGAGAAACTGTTCGACTGAAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACATTCTTCGACCGCGCCGCGCTGCTCCACATCCTGtg > 2:181858/1‑142 (MQ=255)
tGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTcc < 1:280599/143‑1 (MQ=255)
tGTTCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCAACGCGGTGATCCACAACCAGTCTAACGGTTcc > 1:710181/1‑143 (MQ=255)
gtgcggcTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGAGTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCa < 2:127613/137‑1 (MQ=255)
ttCGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCAc > 1:467393/1‑143 (MQ=255)
ttCGACTGGAGCGGTGCGGAAAAC‑CTCGCGTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCAc < 2:192695/143‑1 (MQ=255)
cGACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACtt > 1:782590/1‑143 (MQ=255)
ggcgggggCGGTGCGGAGACC‑CTCGCTTACGCCACGCTGGGTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACTTa < 2:286502/139‑1 (MQ=255)
gACTGGAGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTACGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCATCTTCCACCGCCACGGCCTGATCGACAACCCGTCTAACGGTGCAACTTa > 2:630937/1‑143 (MQ=255)
cTGGAGCGGTGCGGAAAAG‑CTCGCTTACGCCACCCTGGTTGATGAAGGCATTCCGGTTCCCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACTTaca < 2:245966/143‑1 (MQ=255)
tGGAGCGGTGCGGAAACC‑CGCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACTTacac < 1:634875/143‑1 (MQ=255)
|
TTGAGATGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGGGCGGTGCGGAAAAC‑CTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACTTACAC > NC_000913/760351‑760624
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A