mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 53,376 | G→A | 13.0% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxythreonine‑4‑phosphate dehydrogenase |
| RA | 85,882 | G→A | 7.6% | G85S (GGC→AGC) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 124,241 | C→T | 100% | Q409* (CAG→TAG) | aceE → | pyruvate dehydrogenase E1 component |
| MC JC | 257,908 | Δ776 bp | 100% | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 475,971 | C→G | 7.9% | intergenic (+20/+11) | ybaY → / ← atl | PF09619 family lipoprotein YbaY/DNA base‑flipping protein |
| RA | 475,972 | C→G | 7.7% | intergenic (+21/+10) | ybaY → / ← atl | PF09619 family lipoprotein YbaY/DNA base‑flipping protein |
| RA | 533,846 | T→C | 8.3% | intergenic (+20/‑70) | allR → / → gcl | DNA‑binding transcriptional repressor AllR/glyoxylate carboligase |
| RA | 595,519 | T→A | 23.8% | intergenic (‑76/‑81) | cusR ← / → cusC | DNA‑binding transcriptional activator CusR/copper/silver export system outer membrane channel |
| RA | 595,520 | T→A | 19.0% | intergenic (‑77/‑80) | cusR ← / → cusC | DNA‑binding transcriptional activator CusR/copper/silver export system outer membrane channel |
| RA | 696,470 | C→T | 100% | noncoding (35/75 nt) | glnX ← | tRNA‑Gln |
| RA | 725,279 | T→C | 10.5% | K586K (AAA→AAG) | kdpB ← | K(+) transporting P‑type ATPase subunit KdpB |
| RA | 754,446 | A→G | 100% | L8P (CTC→CCC) | gltA ← | citrate synthase |
| RA | 760,485 | G→A | 100% | G594S (GGC→AGC) | sucA → | subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
| RA | 915,081 | G→C | 12.5% | intergenic (‑224/+271) | lysO ← / ← aqpZ | L‑lysine exporter/water channel AqpZ |
| RA | 1,018,986 | A→T | 7.3% | intergenic (+49/+27) | matP → / ← ompA | macrodomain Ter protein/outer membrane porin A |
| RA | 1,026,350 | A→G | 8.7% | E627G (GAA→GGA) | helD → | DNA helicase IV |
| RA | 1,113,544 | G→A | 8.9% | intergenic (+138/‑35) | opgH → / → yceK | osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK |
| RA | 1,113,546 | T→A | 8.8% | intergenic (+140/‑33) | opgH → / → yceK | osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK |
| RA | 1,113,548 | T→C | 8.5% | intergenic (+142/‑31) | opgH → / → yceK | osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK |
| JC JC | 1,293,032 | IS1 (–) +8 bp | 100% | intergenic (‑110/‑488) | hns ← / → tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | insH21 | insH21 | |
| RA | 1,674,955 | A→T | 8.2% | intergenic (+8/+17) | tqsA → / ← pntB | autoinducer 2 exporter/pyridine nucleotide transhydrogenase subunit beta |
| RA | 1,674,958 | A→T | 10.9% | intergenic (+11/+14) | tqsA → / ← pntB | autoinducer 2 exporter/pyridine nucleotide transhydrogenase subunit beta |
| RA | 1,829,322 | A→C | 6.8% | L138R (CTG→CGG) | astD ← | aldehyde dehydrogenase |
| RA | 1,829,328 | C→G | 7.2% | G136A (GGC→GCC) | astD ← | aldehyde dehydrogenase |
| RA | 1,829,334 | G→T | 7.3% | P134Q (CCG→CAG) | astD ← | aldehyde dehydrogenase |
| RA | 1,856,333 | T→G | 10.6% | E199A (GAG→GCG) ‡ | ydjH ← | putative sugar kinase YdjH |
| RA | 1,856,334 | C→A | 11.6% | E199* (GAG→TAG) ‡ | ydjH ← | putative sugar kinase YdjH |
| RA | 1,868,859 | Δ1 bp | 11.4% | intergenic (+17/‑96) | yeaG → / → yeaH | protein kinase YeaG/DUF444 domain‑containing protein YeaH |
| RA | 1,883,027 | C→G | 13.1% | intergenic (+30/‑161) | dmlA → / → yeaV | D‑malate/3‑isopropylmalate dehydrogenase (decarboxylating)/putative transporter YeaV |
| RA | 1,973,572 | A→G | 10.6% | L585L (TTA→CTA) | cheA ← | chemotaxis protein CheA |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA‑5 ← / → uspC | IS1 protein InsA/universal stress protein C |
| RA | 2,085,955 | A→G | 10.9% | F370L (TTC→CTC) | plaP ← | putrescine:H(+) symporter PlaP |
| RA | 2,089,854 | A→T | 10.0% | intergenic (‑141/‑142) | yefM ← / → hisL | YefM antitoxin of the YoeB‑YefM toxin‑antitoxin pair and DNA binding transcriptional repressor/his operon leader peptide |
| RA | 2,090,124 | C→G | 7.0% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative colanic acid biosynthesis glycosyl transferase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (917‑918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,368,101 | T→C | 100% | A21A (GCT→GCC) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| RA | 2,521,344 | C→T | 7.3% | intergenic (+16/+249) | lysV → / ← xapR | tRNA‑Lys/DNA‑binding transcriptional activator XapR |
| RA | 2,521,346 | A→T | 6.7% | intergenic (+18/+247) | lysV → / ← xapR | tRNA‑Lys/DNA‑binding transcriptional activator XapR |
| RA | 2,521,348 | A→G | 9.3% | intergenic (+20/+245) | lysV → / ← xapR | tRNA‑Lys/DNA‑binding transcriptional activator XapR |
| RA | 2,654,142 | T→A | 7.4% | noncoding (288/304 nt) | ryfA → | small regulatory RNA RyfA |
| RA | 2,654,143 | T→A | 7.5% | noncoding (289/304 nt) | ryfA → | small regulatory RNA RyfA |
| RA | 2,654,144 | T→A | 7.5% | noncoding (290/304 nt) | ryfA → | small regulatory RNA RyfA |
| RA | 2,661,821 | C→G | 100% | C104S (TGC→TCC) | iscR ← | DNA‑binding transcriptional dual regulator IscR |
| RA | 2,715,257 | Δ1 bp | 12.5% | coding (64/882 nt) | yfiE ← | putative LysR‑type DNA‑binding transcriptional regulator YfiE |
| RA | 2,715,260:1 | +T | 12.0% | coding (61/882 nt) | yfiE ← | putative LysR‑type DNA‑binding transcriptional regulator YfiE |
| RA | 2,753,986 | A→T | 9.5% | intergenic (+40/+22) | bamE → / ← yfjF | outer membrane protein assembly factor BamE/putative component of the Rsx system |
| RA | 2,761,620 | T→G | 8.1% | K641Q (AAG→CAG) | abpB ← | CP4‑57 prophage; putative helicase YfjK |
| RA | 2,761,623 | C→A | 7.2% | V640L (GTA→TTA) | abpB ← | CP4‑57 prophage; putative helicase YfjK |
| RA | 2,788,777 | C→T | 7.4% | intergenic (+128/‑208) | ygaQ → / → csiD | putative uncharacterized protein YgaQ/PF08943 family protein CsiD |
| RA | 2,814,174 | T→A | 8.0% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux pump membrane subunit EmrB/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 6.9% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux pump membrane subunit EmrB/S‑ribosylhomocysteine lyase |
| RA | 2,926,036 | A→C | 8.8% | E230A (GAA→GCA) | queF → | 7‑cyano‑7‑deazaguanine reductase |
| RA | 2,926,039 | A→T | 8.9% | Q231L (CAG→CTG) | queF → | 7‑cyano‑7‑deazaguanine reductase |
| RA | 2,926,042 | G→T | 8.7% | C232F (TGC→TTC) | queF → | 7‑cyano‑7‑deazaguanine reductase |
| RA | 2,980,744 | A→T | 10.0% | intergenic (‑109/+20) | ygeA ← / ← araE | amino acid racemase/arabinose:H(+) symporter |
| RA | 3,041,634 | A→C | 100% | T108P (ACC→CCC) | ygfZ → | folate‑binding protein |
| RA | 3,067,320 | A→T | 10.9% | intergenic (‑147/+20) | ygfI ← / ← yggE | putative LysR‑type DNA‑binding transcriptional regulator YgfI/uncharacterized protein YggE |
| RA | 3,288,033 | T→G | 6.6% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial protein YraH/putative fimbrial chaperone YraI |
| RA | 3,441,060 | T→C | 7.6% | K206E (AAG→GAG) | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,441,061 | G→C | 7.4% | S205S (TCC→TCG) ‡ | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,441,062 | G→A | 7.6% | S205F (TCC→TTC) ‡ | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,512,306 | G→C | 6.3% | I13M (ATC→ATG) | yhfZ ← | putative DNA‑binding transcriptional regulator YhfZ |
| RA | 3,512,309 | G→C | 11.4% | V12V (GTC→GTG) | yhfZ ← | putative DNA‑binding transcriptional regulator YhfZ |
| RA | 3,560,455:1 | +G | 100% | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,601,825 | G→C | 11.2% | P88A (CCC→GCC) | ftsX ← | cell division protein FtsX |
| RA | 3,616,394 | C→A | 7.5% | T71T (ACC→ACA) | nikC → | Ni(2(+)) ABC transporter membrane subunit NikC |
| RA | 3,616,399 | T→G | 8.5% | V73G (GTG→GGG) | nikC → | Ni(2(+)) ABC transporter membrane subunit NikC |
| RA | 3,642,358 | T→A | 9.8% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide/tripeptide:H(+) symporter DtpB/16S rRNA m(2)G1516 methyltransferase |
| RA | 3,657,599 | T→A | 10.0% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/small regulatory RNA ArrS |
| RA | 3,657,601 | G→C | 9.8% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/small regulatory RNA ArrS |
| RA | 3,657,603 | T→A | 11.9% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/small regulatory RNA ArrS |
| RA | 3,676,271 | A→T | 15.0% | intergenic (+163/+19) | yhjE → / ← yhjG | putative transporter YhjE/AsmA family protein YhjG |
| RA | 3,729,405 | C→G | 8.8% | intergenic (‑34/+38) | xylB ← / ← xylA | xylulokinase/xylose isomerase |
| RA | 3,729,408 | C→G | 9.1% | intergenic (‑37/+35) | xylB ← / ← xylA | xylulokinase/xylose isomerase |
| RA | 3,758,202 | C→A | 9.4% | A554S (GCC→TCC) | selB ← | selenocysteyl‑tRNA‑specific translation elongation factor |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph] | [rph] | |
| RA | 3,884,434 | T→A | 9.8% | R33R (CGT→CGA) | rpmH → | 50S ribosomal subunit protein L34 |
| RA | 3,884,437 | T→A | 10.5% | R34R (CGT→CGA) | rpmH → | 50S ribosomal subunit protein L34 |
| JC | 4,001,645 | Δ5 bp | 93.3% | coding (220‑224/951 nt) | corA → | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter |
| RA | 4,142,512 | C→A | 10.1% | intergenic (‑291/‑18) | ptsA ← / → frwC | putative PTS multiphosphoryl transfer protein PtsA/putative PTS enzyme IIC component FrwC |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase subunit beta |
| RA | 4,269,395 | T→C | 7.0% | intergenic (‑383/‑19) | yjbS ← / → aphA | uncharacterized protein YjbS/acid phosphatase/phosphotransferase |
| RA | 4,296,060 | C→T | 36.5% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,367,702 | A→C | 8.8% | I209S (ATC→AGC) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,472,434 | G→A | 9.6% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,472,437 | T→C | 9.3% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,520,500 | Δ1 bp | 12.8% | intergenic (‑176/+171) | yjhU ← / ← yjhF | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF |
| RA | 4,520,504:1 | +T | 12.2% | intergenic (‑180/+167) | yjhU ← / ← yjhF | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423746–3424526 | 3424526 | 1–781 | 19 [18] | [18] 20 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 141977 = | NA (NA) | 3 (0.070) | 3/246 | NT | NA | intergenic (+10/+31) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase 2 |
| ? | NC_000913 | 142000 = | NA (NA) | intergenic (+33/+8) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase 2 | |||||
| * | ? | NC_000913 | 169739 = | 44 (0.960) | 5 (0.120) | 4/246 | NT | 11.1% | intergenic (+12/‑39) | fhuA/fhuC | ferrichrome outer membrane transporter/phage receptor/iron(III) hydroxamate ABC transporter ATP binding subunit |
| ? | NC_000913 | 169759 = | 39 (0.910) | intergenic (+32/‑19) | fhuA/fhuC | ferrichrome outer membrane transporter/phage receptor/iron(III) hydroxamate ABC transporter ATP binding subunit | |||||
| * | ? | NC_000913 | 270239 = | NA (NA) | 4 (0.090) | 4/250 | NT | 8.5% | noncoding (34/335 nt) | IS911 | repeat region |
| ? | NC_000913 | 4507177 = | 43 (0.990) | noncoding (53/334 nt) | IS911 | repeat region | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 5 (0.120) | 5/244 | NT | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315852 | NA (NA) | 28 (0.630) | 10/256 | NT | NA | noncoding (624/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315875 | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315892 = | NA (NA) | 3 (0.070) | 3/258 | NT | NA | noncoding (664/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315923 = | NA (NA) | noncoding (695/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 354605 | NA (NA) | 4 (0.090) | 4/250 | NT | NA | noncoding (6/28 nt) | other | REPt26a |
| ? | NC_000913 | = 354653 | NA (NA) | noncoding (13/36 nt) | other | REP26b | |||||
| * | ? | NC_000913 | 392522 = | NA (NA) | 7 (0.160) | 4/254 | NT | NA | noncoding (445/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | 392551 = | NA (NA) | noncoding (416/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 566777 = | NA (NA) | 1625 (35.760) | 247/262 | NT | 97.2% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 48 (1.050) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | = 572471 | 48 (1.050) | 8 (0.240) +34 bp |
4/196 | NT | 22.4% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 27 (0.590) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 689755 | 35 (0.760) | 3 (0.070) | 3/256 | NT | 8.0% | coding (1127/1539 nt) | lnt | apolipoprotein N‑acyltransferase |
| ? | NC_000913 | = 689762 | 35 (0.790) | coding (1120/1539 nt) | lnt | apolipoprotein N‑acyltransferase | |||||
| * | ? | NC_000913 | = 707934 | NA (NA) | 5 (0.120) | 3/250 | NT | NA | noncoding (2/34 nt) | other | REP63c |
| ? | NC_000913 | = 832356 | NA (NA) | noncoding (32/34 nt) | other | REP75b | |||||
| * | ? | NC_000913 | = 1068451 | NA (NA) | 4 (0.090) | 4/250 | NT | NA | noncoding (2/34 nt) | other | REP92b |
| ? | NC_000913 | 2001998 = | NA (NA) | noncoding (30/34 nt) | other | REP141a | |||||
| * | ? | NC_000913 | 1207790 = | 12 (0.260) | 36 (0.900) | 30/232 | NT | 77.8% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 10 (0.250) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 12 (0.260) | 26 (0.650) | 24/232 | NT | 71.7% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 10 (0.250) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1223991 | 47 (1.030) | 5 (0.110) | 4/252 | NT | 9.9% | intergenic (+84/+288) | ycgI/minE | protein YcgI/Z‑ring positioning protein MinE |
| ? | NC_000913 | = 1223997 | 46 (1.050) | intergenic (+90/+282) | ycgI/minE | protein YcgI/Z‑ring positioning protein MinE | |||||
| * | ? | NC_000913 | 1644331 = | 51 (1.110) | 3 (0.070) | 3/254 | NT | 5.7% | intergenic (‑27/+320) | ydfU/rem | Qin prophage; protein YdfU/Qin prophage; protein Rem |
| ? | NC_000913 | 1644344 = | 50 (1.140) | intergenic (‑40/+307) | ydfU/rem | Qin prophage; protein YdfU/Qin prophage; protein Rem | |||||
| * | ? | NC_000913 | = 1885804 | 39 (0.850) | 3 (0.070) | 3/250 | NT | 7.4% | intergenic (+15/‑41) | yeaW/yeaX | carnitine monooxygenase subunit YeaW/carnitine monooxygenase subunit YeaX |
| ? | NC_000913 | = 1885810 | 38 (0.880) | intergenic (+21/‑35) | yeaW/yeaX | carnitine monooxygenase subunit YeaW/carnitine monooxygenase subunit YeaX | |||||
| * | ? | NC_000913 | 2035286 = | 46 (1.000) | 3 (0.070) | 3/240 | NT | 7.0% | intergenic (+43/‑549) | yedS/hchA | putative outer membrane protein YedS, N‑terminal fragment/protein/nucleic acid deglycase 1 |
| ? | NC_000913 | 2035318 = | 38 (0.910) | intergenic (+75/‑517) | yedS/hchA | putative outer membrane protein YedS, N‑terminal fragment/protein/nucleic acid deglycase 1 | |||||
| * | ? | NC_000913 | = 2073987 | 41 (0.900) | 4 (0.090) | 4/248 | NT | 9.1% | coding (2449/3120 nt) | flu | CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter |
| ? | NC_000913 | = 2074000 | 41 (0.950) | coding (2462/3120 nt) | flu | CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter | |||||
| * | ? | NC_000913 | 2393132 = | NA (NA) | 3 (0.070) | 3/250 | NT | NA | noncoding (1/36 nt) | other | REP166 |
| ? | NC_000913 | 2393162 = | NA (NA) | noncoding (31/36 nt) | other | REP166 | |||||
| * | ? | NC_000913 | 2464211 = | 44 (0.960) | 6 (0.150) | 6/238 | NT | 14.0% | intergenic (+141/+41) | yfdF/mlaA | protein YfdF/intermembrane phospholipid transport system ‑ outer membrane lipoprotein MlaA |
| ? | NC_000913 | 2464243 = | 34 (0.820) | intergenic (+173/+9) | yfdF/mlaA | protein YfdF/intermembrane phospholipid transport system ‑ outer membrane lipoprotein MlaA | |||||
| * | ? | NC_000913 | 2525897 = | 45 (0.980) | 4 (0.090) | 4/244 | NT | 9.0% | intergenic (+6/+33) | yfeN/yfeR | conserved outer membrane protein YfeN/putative LysR‑type DNA‑binding transcriptional regulator YfeR |
| ? | NC_000913 | 2525920 = | 39 (0.920) | intergenic (+29/+10) | yfeN/yfeR | conserved outer membrane protein YfeN/putative LysR‑type DNA‑binding transcriptional regulator YfeR | |||||
| * | ? | NC_000913 | = 2556158 | 49 (1.070) | 3 (0.070) | 3/252 | NT | 5.9% | coding (243/660 nt) | eutL | putative structural protein, ethanolamine utilization microcompartment |
| ? | NC_000913 | = 2556163 | 49 (1.120) | coding (238/660 nt) | eutL | putative structural protein, ethanolamine utilization microcompartment | |||||
| * | ? | NC_000913 | 2640658 = | 51 (1.110) | 3 (0.070) | 3/248 | NT | 6.1% | intergenic (‑83/+28) | hisS/ispG | histidine‑‑tRNA ligase/(E)‑4‑hydroxy‑3‑methylbut‑2‑enyl‑diphosphate synthase (flavodoxin) |
| ? | NC_000913 | 2640677 = | 45 (1.050) | intergenic (‑102/+9) | hisS/ispG | histidine‑‑tRNA ligase/(E)‑4‑hydroxy‑3‑methylbut‑2‑enyl‑diphosphate synthase (flavodoxin) | |||||
| * | ? | NC_000913 | = 2657425 | 51 (1.110) | 3 (0.070) | 3/254 | NT | 5.5% | coding (1511/1851 nt) | hscA | iron‑sulfur cluster biosynthesis chaperone HscA |
| ? | NC_000913 | = 2657440 | 55 (1.250) | coding (1496/1851 nt) | hscA | iron‑sulfur cluster biosynthesis chaperone HscA | |||||
| * | ? | NC_000913 | 2726026 = | 51 (1.110) | 4 (0.090) | 4/264 | NT | 7.3% | intergenic (‑280/+43) | kgtP/rrfG | alpha‑ketoglutarate:H(+) symporter/5S ribosomal RNA |
| ? | NC_000913 | 3423662 = | NA (NA) | intergenic (‑7/+6) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA | |||||
| * | ? | NC_000913 | 2731065 = | 40 (0.870) | 5 (0.120) | 4/248 | NT | 11.7% | noncoding (93/1542 nt) | rrsG | 16S ribosomal RNA |
| ? | NC_000913 | 2731083 = | 38 (0.880) | noncoding (75/1542 nt) | rrsG | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | 2731417 = | 40 (0.870) | 3 (0.070) | 3/262 | NT | 7.1% | intergenic (‑260/+183) | rrsG/clpB | 16S ribosomal RNA/ClpB chaperone |
| ? | NC_000913 | = 3941550 | 39 (0.860) | intergenic (‑223/‑258) | yieP/rrsC | putative transcriptional regulator YieP/16S ribosomal RNA | |||||
| * | ? | NC_000913 | 2884559 = | 55 (1.200) | 6 (0.140) | 4/254 | NT | 10.6% | coding (2661/2667 nt) | cas3 | CRISPR‑associated endonuclease/helicase Cas3 |
| ? | NC_000913 | 2884597 = | 48 (1.090) | coding (2623/2667 nt) | cas3 | CRISPR‑associated endonuclease/helicase Cas3 | |||||
| * | ? | NC_000913 | 2904203 = | 64 (1.400) | 5 (0.120) | 4/250 | NT | 7.7% | intergenic (+829/+544) | ygcE/queE | putative sugar kinase YgcE/putative 7‑carboxy‑7‑deazaguanine synthase QueE |
| ? | NC_000913 | 2904221 = | 59 (1.360) | intergenic (+847/+526) | ygcE/queE | putative sugar kinase YgcE/putative 7‑carboxy‑7‑deazaguanine synthase QueE | |||||
| * | ? | NC_000913 | 3070076 = | NA (NA) | 4 (0.090) | 3/250 | NT | NA | noncoding (26/29 nt) | other | REPv213b |
| ? | NC_000913 | = 3512510 | NA (NA) | intergenic (‑166/+124) | yhfZ/trpS | putative DNA‑binding transcriptional regulator YhfZ/tryptophan‑‑tRNA ligase | |||||
| * | ? | NC_000913 | 3123446 = | 39 (0.850) | 3 (0.070) | 3/260 | NT | 7.7% | coding (360/2172 nt) | glcB | malate synthase G |
| ? | NC_000913 | 3123486 = | 34 (0.750) | coding (320/2172 nt) | glcB | malate synthase G | |||||
| * | ? | NC_000913 | = 3726897 | 36 (0.790) | 3 (0.070) | 3/242 | NT | 8.1% | intergenic (+15/+27) | wecH/yiaA | O‑acetyltransferase WecH/conserved inner membrane protein YiaA |
| ? | NC_000913 | = 3726905 | 35 (0.830) | intergenic (+23/+19) | wecH/yiaA | O‑acetyltransferase WecH/conserved inner membrane protein YiaA | |||||
| * | ? | NC_000913 | = 4035622 | 10 (0.220) | 6 (0.140) | 4/250 | NT | 55.9% | noncoding (92/1542 nt) | rrsA | 16S ribosomal RNA |
| ? | NC_000913 | = 4166734 | 0 (0.000) | noncoding (76/1542 nt) | rrsB | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | 4037649 = | NA (NA) | 6 (0.140) | 6/250 | NT | NA | noncoding (131/2905 nt) | rrlA | 23S ribosomal RNA |
| ? | NC_000913 | 4037667 = | NA (NA) | noncoding (149/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 4040816 | NA (NA) | 6 (0.140) | 3/244 | NT | 10.4% | intergenic (+180/+90) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein |
| ? | NC_000913 | = 4040840 | 56 (1.220) | intergenic (+204/+66) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein | |||||
| * | ? | NC_000913 | 4094358 = | NA (NA) | 3 (0.070) | 3/250 | NT | NA | noncoding (1/36 nt) | other | REP299b |
| ? | NC_000913 | 4094572 = | NA (NA) | noncoding (31/36 nt) | other | REP299f | |||||
| * | ? | NC_000913 | = 4252303 | 51 (1.110) | 3 (0.070) | 3/246 | NT | 5.6% | intergenic (+20/‑203) | yjbI/ubiC | pentapeptide repeats‑containing protein YjbI/chorismate lyase |
| ? | NC_000913 | = 4252317 | 53 (1.240) | intergenic (+34/‑189) | yjbI/ubiC | pentapeptide repeats‑containing protein YjbI/chorismate lyase | |||||
| * | ? | NC_000913 | 4559341 = | 51 (1.110) | 4 (0.090) | 3/248 | NT | 7.9% | coding (186/1173 nt) | iadA | isoaspartyl dipeptidase |
| ? | NC_000913 | 4559360 = | 46 (1.070) | coding (167/1173 nt) | iadA | isoaspartyl dipeptidase | |||||