mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 11,127 | C→G | 5.3% | S77T (AGT→ACT) | yaaW ← | UPF0174 family protein |
| RA | 116,035 | G→A | 5.2% | C355C (TGC→TGT) | hofB ← | T2SE secretion family protein; P‑loop ATPase superfamily protein |
| RA | 231,589 | C→T | 5.5% | H156H (CAC→CAT) | yafD → | endo/exonuclease/phosphatase family protein |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 286,206 | G→C | 5.9% | G271A (GGC→GCC) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 347,188 | G→A | 5.7% | A419V (GCG→GTG) | prpR ← | propionate catabolism operon regulatory protein |
| RA | 496,157 | T→C | 5.2% | R346R (CGT→CGC) | htpG → | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 498,683 | G→A | 5.2% | R210H (CGT→CAT) | hemH → | ferrochelatase |
| RA | 518,860 | A→G | 5.9% | F97S (TTC→TCC) | ybbO ← | putative oxidoreductase |
| RA | 603,688 | T→A | 5.8% | T326S (ACC→TCC) | ybdG ← | mechanosensitive channel protein, miniconductance |
| RA | 624,659 | A→T | 5.8% | intergenic (‑149/‑226) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 624,664 | G→T | 7.2% | intergenic (‑154/‑221) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 624,665 | G→C | 6.8% | intergenic (‑155/‑220) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 624,666 | A→C | 6.5% | intergenic (‑156/‑219) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 624,671 | A→T | 7.3% | intergenic (‑161/‑214) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 699,433 | C→A | 6.3% | intergenic (‑256/+141) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,700 | G→A | 6.0% | A209A (GCC→GCT) | umpH ← | UMP phosphatase |
| RA | 884,088 | Δ1 bp | 5.7% | coding (416/1233 nt) | mdfA → | multidrug efflux system protein |
| RA | 896,520 | T→C | 6.4% | P129P (CCT→CCC) | potH → | putrescine ABC transporter permease |
| RA | 930,357 | A→G | 6.9% | S202S (AGT→AGC) | cydD ← | glutathione/cysteine ABC transporter export permease/ATPase |
| RA | 936,594 | C→A | 5.1% | A1124D (GCC→GAC) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 958,769 | C→G | 7.3% | intergenic (+28/‑43) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,771 | A→T | 7.2% | intergenic (+30/‑41) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,773 | C→G | 8.3% | intergenic (+32/‑39) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 1,072,613 | G→T | 5.6% | P84H (CCC→CAC) | rutB ← | ureidoacrylate amidohydrolase |
| RA | 1,085,667 | T→C | 5.1% | Y226H (TAT→CAT) | phoH → | ATP‑binding protein; putative PhoH family P‑loop ATPase |
| RA | 1,087,337 | G→A | 5.8% | R170R (CGC→CGT) | pgaC ← | biofilm PGA synthase PgaCD, catalytic subunit; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase |
| RA | 1,134,222 | G→A | 6.4% | G141S (GGC→AGC) | flgF → | flagellar component of cell‑proximal portion of basal‑body rod |
| RA | 1,146,137 | A→G | 6.1% | S153S (AGT→AGC) | yceF ← | m(7)GTP pyrophosphatase |
| RA | 1,174,077 | G→A | 6.4% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 6.6% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,258,755 | T→A | 7.0% | intergenic (‑242/‑36) | pth ← / → ychH | peptidyl‑tRNA hydrolase/DUF2583 family putative inner membrane protein |
| RA | 1,286,965 | A→G | 10.4% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,983 | A→G | 8.2% | intergenic (+457/+83) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,328,724 | A→T | 6.9% | M130K (ATG→AAG) | yciK ← | putative EmrKY‑TolC system oxoacyl‑(acyl carrier protein) reductase |
| RA | 1,394,083 | C→T | 6.3% | T286M (ACG→ATG) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
| RA | 1,398,552 | G→A | 5.4% | A24V (GCT→GTT) | uspE ← | stress‑induced protein |
| RA | 1,446,357:1 | +T | 5.5% | intergenic (+151/+21) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,446,362 | Δ1 bp | 5.3% | intergenic (+156/+16) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,455,598 | C→T | 5.3% | G145G (GGC→GGT) | paaC → | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
| RA | 1,456,627 | C→T | 6.0% | G66G (GGC→GGT) | paaE → | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
| RA | 1,460,981 | C→A | 5.7% | A30D (GCT→GAT) | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,464,897 | G→T | 6.6% | E143* (GAA→TAA) | paaY → | thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein |
| RA | 1,563,432 | T→A | 5.3% | I768F (ATC→TTC) | dosP ← | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator |
| RA | 1,567,466 | G→C | 5.5% | intergenic (‑326/+38) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,567,469 | A→T | 5.3% | intergenic (‑329/+35) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,567,471 | A→C | 7.4% | intergenic (‑331/+33) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,567,472 | G→C | 5.3% | intergenic (‑332/+32) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,592,022 | A→G | 6.7% | I52T (ATC→ACC) | hipA ← | inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
| RA | 1,622,830 | A→G | 5.0% | noncoding (85/98 nt) | mgrR ← | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ‑regulated, Hfq‑dependent; affects sensitivity to antimicrobial peptides |
| RA | 1,622,837 | C→T | 5.1% | noncoding (78/98 nt) | mgrR ← | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ‑regulated, Hfq‑dependent; affects sensitivity to antimicrobial peptides |
| RA | 1,662,350 | C→T | 100% | P599S (CCC→TCC) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
| RA | 1,806,319 | C→T | 100% | intergenic (‑236/‑51) | ydiY ← / → pfkB | acid‑inducible putative outer membrane protein/6‑phosphofructokinase II |
| RA | 1,807,094 | T→C | 100% | V242A (GTG→GCG) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,885,952 | G→A | 5.5% | A36A (GCG→GCA) | yeaX → | putative YeaWX dioxygenase beta subunit, reductase component |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 2,028,158 | G→C | 5.6% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 5.6% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 6.4% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,075,720 | C→A | 5.8% | P314P (CCC→CCA) | yeeR → | CP4‑44 prophage; putative membrane protein |
| RA | 2,076,188 | C→T | 5.6% | N470N (AAC→AAT) | yeeR → | CP4‑44 prophage; putative membrane protein |
| RA | 2,106,112 | G→A | 5.6% | T372I (ACT→ATT) | wbbH ← | O‑antigen polymerase |
| RA | 2,134,710 | T→C | 5.2% | N315D (AAC→GAC) | wzc ← | colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,230,246 | T→C | 5.5% | H47R (CAT→CGT) | dusC ← | tRNA‑dihydrouridine synthase C |
| RA | 2,260,232 | C→T | 6.4% | L393L (CTG→CTA) | fruA ← | fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,282,830 | T→C | 7.1% | intergenic (+29/+110) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,831 | C→G | 6.1% | intergenic (+30/+109) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,832 | C→G | 6.9% | intergenic (+31/+108) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,833 | G→A | 6.1% | intergenic (+32/+107) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,310,322 | A→T | 5.8% | V28V (GTT→GTA) ‡ | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
| RA | 2,310,323 | A→T | 6.0% | V28D (GTT→GAT) ‡ | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
| RA | 2,310,326 | A→T | 5.7% | F27Y (TTC→TAC) ‡ | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
| RA | 2,310,327 | A→T | 5.3% | F27I (TTC→ATC) ‡ | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
| RA | 2,339,980 | G→A | 5.1% | P138P (CCG→CCA) | ubiG → | bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase/ 2‑octaprenyl‑6‑hydroxy phenol methylase |
| RA | 2,357,653 | A→G | 5.6% | L250L (CTA→CTG) | yfaD → | transposase_31 family protein |
| RA | 2,383,956 | A→T | 5.4% | intergenic (+32/+39) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,431,978 | T→C | 5.3% | K322R (AAA→AGA) | folC ← | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase |
| RA | 2,577,513 | G→A | 5.9% | P289S (CCG→TCG) | maeB ← | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| RA | 2,591,970 | A→T | 5.0% | T122S (ACG→TCG) | dapE → | N‑succinyl‑diaminopimelate deacylase |
| RA | 2,647,024 | C→T | 5.9% | R101H (CGC→CAC) | pbpC ← | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein |
| RA | 2,665,193 | T→A | 5.1% | Y268* (TAT→TAA) | yfhR → | putative S9 family prolyl oligopeptidase |
| RA | 2,734,830 | G→A | 5.1% | Q69* (CAG→TAG) | yfiH ← | UPF0124 family protein |
| RA | 2,800,662 | A→G | 5.2% | intergenic (+187/‑61) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,884,577 | T→C | 5.3% | R881R (AGA→AGG) ‡ | ygcB ← | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| RA | 2,884,578 | C→A | 5.3% | R881I (AGA→ATA) ‡ | ygcB ← | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| RA | 2,884,579 | T→G | 5.3% | R881R (AGA→CGA) ‡ | ygcB ← | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| RA | 2,900,322 | C→T | 7.0% | intergenic (‑49/‑270) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,900,324 | G→T | 6.6% | intergenic (‑51/‑268) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,900,327 | A→C | 7.5% | intergenic (‑54/‑265) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,936,203 | C→T | 5.1% | A207V (GCG→GTG) | fucI → | L‑fucose isomerase |
| RA | 3,000,916 | C→T | 6.0% | A191V (GCG→GTG) | xdhA → | xanthine dehydrogenase, molybdenum binding subunit |
| RA | 3,011,632 | G→A | 5.2% | A58T (GCC→ACC) | yqeA → | putative amino acid kinase |
| RA | 3,052,025 | C→A | 5.5% | S98I (AGC→ATC) | ubiI ← | 2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,125,414 | Δ1 bp | 6.4% | coding (46/1224 nt) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,125,415 | Δ1 bp | 6.4% | coding (45/1224 nt) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,228,476 | C→T | 5.3% | L226F (CTT→TTT) | ygjJ → | putative periplasmic protein |
| RA | 3,331,276 | G→C | 6.0% | A160G (GCT→GGT) | obgE ← | GTPase involved in cell partioning and DNA repair |
| RA | 3,351,482 | G→A | 5.5% | A515V (GCG→GTG) | arcB ← | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| RA | 3,448,278 | C→A | 5.1% | intergenic (‑129/+36) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| RA | 3,495,131 | T→C | 5.7% | V374A (GTG→GCG) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,576,161 | G→C | 5.6% | Q301E (CAA→GAA) | gntU ← | gluconate transporter, low affinity GNT 1 system |
| RA | 3,750,144 | A→T | 5.0% | H20L (CAT→CTT) | sgbE → | L‑ribulose‑5‑phosphate 4‑epimerase |
| RA | 3,781,132 | C→G | 6.1% | intergenic (+115/‑83) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,781,138 | A→C | 8.1% | intergenic (+121/‑77) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,830,727 | C→T | 6.1% | Q91* (CAA→TAA) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,959,924 | A→T | 5.5% | intergenic (‑111/+88) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,959,925 | A→T | 5.4% | intergenic (‑112/+87) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,959,926 | A→T | 5.6% | intergenic (‑113/+86) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,978,113 | G→A | 5.1% | E197K (GAG→AAG) | wecF → | TDP‑Fuc4NAc:lipidIIFuc4NAc transferase |
| RA | 4,081,323 | C→T | 5.2% | A180T (GCC→ACC) | fdoI ← | formate dehydrogenase‑O, cytochrome b556 subunit |
| RA | 4,151,901 | T→C | 5.8% | T400A (ACG→GCG) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,187,214 | A→C | 100% | D622A (GAC→GCC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,250,156 | C→T | 5.0% | T201T (ACC→ACT) | malM → | maltose regulon periplasmic protein |
| RA | 4,296,060 | C→T | 27.8% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,390,401 | C→A | 5.2% | intergenic (‑41/+56) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,392,617 | C→G | 6.4% | noncoding (35/76 nt) | glyY → | tRNA‑Gly |
| RA | 4,520,500 | Δ1 bp | 5.9% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 5.8% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,564,528 | C→T | 6.2% | T54T (ACG→ACA) | yjiL ← | putative ATPase, activator of (R)‑hydroxyglutaryl‑CoA dehydratase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423739–3424234 | 3424558–3424238 | 5–820 | 35 [32] | [29] 36 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 4107527 | 4108510 | 984 | 34 [32] | [32] 33 | [pfkA] | [pfkA] |
| * | * | ÷ | NC_000913 | 4144004 | 4147101 | 3098 | 33 [32] | [31] 33 | [pflD]–[pflC] | [pflD],[pflC] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 274620 = | NA (NA) | 3 (0.040) | 3/244 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1207790 = | 40 (0.490) | 36 (0.510) | 32/230 | NT | 51.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 33 (0.460) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 42 (0.520) | 37 (0.520) | 34/230 | NT | 51.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 33 (0.460) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 2291337 | NA (NA) | 4 (0.050) | 4/244 | NT | NA | noncoding (185/199 nt) | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site |
| ? | NC_000913 | = 2291342 | NA (NA) | noncoding (190/199 nt) | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 2296690 | 57 (0.700) | 4 (0.050) | 4/252 | NT | 6.3% | coding (335/663 nt) | ccmB | heme export ABC transporter permease |
| ? | NC_000913 | = 2296727 | 65 (0.830) | coding (298/663 nt) | ccmB | heme export ABC transporter permease | |||||
| * | ? | NC_000913 | 3423318 = | 103 (1.270) | 7 (0.090) | 5/244 | NT | 7.1% | intergenic (+124/+105) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423341 = | 87 (1.150) | intergenic (+147/+82) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | 3587430 = | 99 (1.220) | 5 (0.070) | 4/242 | NT | 5.5% | coding (684/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic |
| ? | NC_000913 | 3587464 = | 80 (1.070) | coding (650/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic | |||||