mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,296,329 | 0 | A | C | 46.7% | 50.5 / 52.7 | 60 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 4,393,061 | 0 | T | G | 39.5% | 57.1 / 13.8 | 38 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 1,688,990 | 0 | A | C | 33.3% | 90.4 / 10.9 | 46 | T92P (ACC→CCC) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
| * | REL606 | 3,492,082 | 0 | T | G | 33.3% | 122.7 / 11.5 | 60 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,875,483 | 0 | G | C | 31.3% | 182.6 / 100.9 | 100 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| * | REL606 | 2,631,772 | 0 | A | C | 30.2% | 87.7 / 11.5 | 43 | intergenic (‑267/‑141) | rpoE/nadB | RNA polymerase, sigma 24 (sigma E) factor/L‑aspartate oxidase |
| * | REL606 | 1,747,903 | 0 | G | T | 29.2% | 199.4 / 72.1 | 89 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 2,448,098 | 0 | T | G | 29.2% | 99.6 / 14.1 | 49 | F278V (TTT→GTT) | nupC | nucleoside (except guanosine) transporter |
| * | REL606 | 1,004,106 | 0 | A | C | 26.7% | 129.1 / 14.5 | 60 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 1,484,105 | 0 | A | G | 26.2% | 86.6 / 12.8 | 42 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 154,497 | 0 | T | G | 23.1% | 131.4 / 10.6 | 52 | A191A (GCA→GCC) | yadL | predicted fimbrial‑like adhesin protein |
| * | REL606 | 1,416,838 | 0 | T | G | 22.5% | 167.2 / 11.6 | 71 | intergenic (+1/‑4) | ECB_01334/ECB_01335 | putative Lysozyme/conserved hypothetical protein |
| * | REL606 | 2,417,495 | 0 | T | A | 20.3% | 176.5 / 10.8 | 59 | L24F (TTA→TTT) | emrK | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component |
| Marginal new junction evidence (lowest skew 10 of 270 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2039480 | 117 (1.970) | 15 (0.280) | 12/134 | 3.7 | 17.2% | coding (215/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | = 2039680 | 40 (0.760) | coding (15/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | = 3582336 | 92 (1.550) | 16 (0.290) | 12/140 | 3.9 | 16.3% | coding (356/1224 nt) | yhiS | hypothetical protein |
| ? | REL606 | = 3582485 | 78 (1.410) | coding (505/1224 nt) | yhiS | hypothetical protein | |||||
| * | ? | REL606 | 2041682 = | 56 (0.940) | 13 (0.260) | 10/128 | 4.0 | 16.4% | coding (1139/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2041834 = | 85 (1.680) | coding (987/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2041245 = | 50 (0.840) | 14 (0.250) | 11/140 | 4.1 | 17.6% | coding (139/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041495 = | 84 (1.520) | coding (1326/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | = 3021002 | 120 (2.020) | 13 (0.240) | 9/136 | 4.6 | 12.5% | coding (482/933 nt) | ECB_02820 | hypothetical protein |
| ? | REL606 | = 3021158 | 73 (1.360) | coding (326/933 nt) | ECB_02820 | hypothetical protein | |||||
| * | ? | REL606 | 2038074 = | 73 (1.230) | 12 (0.230) | 9/134 | 4.6 | 16.7% | coding (57/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2038286 = | 55 (1.040) | coding (663/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | 3123465 = | 78 (1.310) | 10 (0.180) | 9/140 | 4.8 | 12.4% | coding (749/750 nt) | yqiH | predicted periplasmic pilin chaperone |
| ? | REL606 | 3123649 = | 69 (1.250) | coding (182/1065 nt) | yqiI | hypothetical protein | |||||
| * | ? | REL606 | 2039188 = | 35 (0.590) | 11 (0.200) | 9/140 | 4.8 | 14.1% | coding (507/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | 2039561 = | 102 (1.840) | coding (134/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | = 1600838 | 28 (0.470) | 14 (0.250) | 9/140 | 4.8 | 34.9% | coding (34/267 nt) | ydfK | predicted DNA‑binding transcriptional regulator |
| ? | REL606 | = 1600968 | NA (NA) | coding (164/267 nt) | ydfK | predicted DNA‑binding transcriptional regulator | |||||
| * | ? | REL606 | 1425700 = | NA (NA) | 13 (0.230) | 9/140 | 4.8 | 34.1% | coding (164/267 nt) | ynaE | predicted DNA‑binding transcriptional regulator |
| ? | REL606 | 1425830 = | 27 (0.460) | coding (34/267 nt) | ynaE | predicted DNA‑binding transcriptional regulator | |||||