mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 203,056 | C→G | 25.0% | intergenic (‑6/‑120) | SAS0171 ← / → SAS0172 | putative membrane protein/putative membrane protein |
| RA | BX571857 | 416,485 | G→A | 6.4% | intergenic (+427/‑17) | SAS0368 → / → SAS0369 | hypothetical protein/putative membrane protein |
| RA | BX571857 | 431,505 | T→C | 7.8% | S77P (TCA→CCA) | SAS0387 → | exotoxin |
| RA | BX571857 | 495,714 | T→C | 6.1% | intergenic (+552/‑352) | unknown → / → SAS0438 | –/Orn/Lys/Arg decarboxylase family protein |
| RA | BX571857 | 605,157 | T→C | 5.3% | D1007D (GAT→GAC) | SAS0521 → | bone sialoprotein‑binding protein |
| RA | BX571857 | 629,811 | G→T | 100% | intergenic (+506/‑81) | SAS0548 → / → SAS0549 | lipoate‑protein ligase A protein/mevalonate kinase |
| RA | BX571857 | 843,239 | A→G | 5.5% | N731D (AAC→GAC) | SAS0752 → | clumping factor |
| RA | BX571857 | 875,238 | A→T | 15.8% | D229V (GAC→GTC) | SAS0792 → | conserved hypothetical protein |
| RA | BX571857 | 1,167,297 | A→G | 6.1% | K71R (AAA→AGA) | SAS1093 → | hypothetical protein |
| RA | BX571857 | 1,187,071 | G→T | 42.5% | G191C (GGT→TGT) | SAS1115 → | penicillin‑binding protein 1 |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| RA | BX571857 | 1,267,927 | G→T | 28.9% | intergenic (+29/‑127) | SAS1184 → / → SAS1185 | DNA topoisomerase I/conserved hypothetical protein |
| RA | BX571857 | 1,508,098 | C→G | 100% | T157S (ACT→AGT) | SAS1385 → | putative membrane protein |
| RA | BX571857 | 1,839,866 | T→G | 27.1% | intergenic (‑415/+60) | SAS1688 ← / ← SAS1689 | repressor of toxins/conserved hypothetical protein |
| RA | BX571857 | 1,868,342 | G→A | 100% | G129D (GGT→GAT) | SAS1720 → | putative membrane protein |
| RA | BX571857 | 2,223,288 | C→T | 44.1% | pseudogene (1406/5385 nt) | fmtB ← | putative surface anchored protein (pseudogene) |
| RA | BX571857 | 2,489,372 | G→C | 6.9% | A172P (GCC→CCC) | SAS2328 → | hypothetical protein |
| RA | BX571857 | 2,623,997 | G→A | 11.5% | intergenic (+327/‑22) | SAS2443 → / → SAS2444 | putative copper importing ATPase A/putative heavy‑metal‑associated protein |
| RA | BX571857 | 2,632,830 | G→C | 18.0% | A186G (GCA→GGA) | SAS2452 ← | secretory antigen precursor |
| RA | BX571857 | 2,691,066 | G→T | 54.7% | intergenic (‑871/+553) | SAS2507 ← / ← SAS2508 | putative glutathione peroxidase/putative membrane protein |
| RA | BX571857 | 2,700,131 | A→G | 6.6% | D779D (GAT→GAC) | SAS2516 ← | fibrinogen and keratin‑10 binding surface anchored protein |
| RA | BX571857 | 2,700,245 | A→G | 5.1% | D741D (GAT→GAC) | SAS2516 ← | fibrinogen and keratin‑10 binding surface anchored protein |
| RA | BX571858 | 20,628:1 | +G | 100% | coding (288/306 nt) | pSAS24 → | putative exported protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BX571858 | 20652 | 20652 | 1 | 195 [0] | [0] NA | pSAS24/– | putative exported protein/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 493805 | NA (NA) | 3 (0.020) +GACTTCGGTC |
3/152 | NT | NA | noncoding (1753/2923 nt) | unknown | |
| ? | BX571857 | 493828 = | NA (NA) | noncoding (1776/2923 nt) | unknown | ||||||
| * | ? | BX571857 | 980997 = | NA (NA) | 14 (0.110) | 13/118 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
| * | ? | BX571858 | 1 = | 0 (0.000) | 167 (1.040) | 88/170 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||