mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 863 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 63,948 | 0 | G | A | 73.9% | 32.8 / 10.7 | 23 | T611T (ACC→ACT) | polB | DNA polymerase II |
| * | W3110S.gb | 2,678,759 | 0 | G | A | 73.7% | 55.6 / 22.0 | 38 | G881G (GGC→GGT) | yphG | conserved hypothetical protein |
| * | W3110S.gb | 3,680,097 | 0 | G | A | 73.7% | 55.9 / 22.7 | 38 | H418H (CAC→CAT) | ilvA | threonine deaminase |
| * | W3110S.gb | 3,680,100 | 0 | T | C | 73.7% | 58.6 / 21.4 | 38 | L417L (CTA→CTG) | ilvA | threonine deaminase |
| * | W3110S.gb | 429,106 | 0 | A | G | 73.6% | 87.3 / 31.9 | 53 | A126A (GCA→GCG) | secF | SecYEG protein translocase auxillary subunit |
| * | W3110S.gb | 1,916,961 | 0 | T | G | 73.3% | 63.1 / 13.9 | 30 | V96V (GTA→GTC) | proQ | predicted structural transport element |
| * | W3110S.gb | 155,463 | 0 | A | T | 73.2% | 123.0 / 53.0 | 71 | *247K (TAA→AAA) | ecpD | predicted periplasmic pilin chaperone |
| * | W3110S.gb | 1,099,635 | 0 | C | T | 73.2% | 87.6 / 36.0 | 56 | N172N (AAC→AAT) | ycdX | predicted zinc‑binding hydrolase |
| * | W3110S.gb | 23,325 | 0 | G | A | 73.1% | 36.4 / 14.1 | 26 | G312D (GGC→GAC) | ileS | isoleucyl‑tRNA synthetase |
| * | W3110S.gb | 3,331,211 | 0 | G | T | 73.1% | 26.0 / 20.6 | 26 | S133S (TCC→TCA) | obgE | GTPase involved in cell partioning and DNA repair |
| * | W3110S.gb | 3,331,217 | 0 | T | C | 73.1% | 38.3 / 13.8 | 26 | K131K (AAA→AAG) | obgE | GTPase involved in cell partioning and DNA repair |
| * | W3110S.gb | 2,690,918 | 0 | G | A | 73.0% | 54.9 / 22.4 | 37 | F1094F (TTC→TTT) | purL | phosphoribosylformyl‑glycineamide synthetase |
| * | W3110S.gb | 705,013 | 0 | T | C | 72.7% | 30.2 / 10.9 | 22 | I216I (ATT→ATC) | nagE | fused N‑acetyl glucosamine specific PTS enzyme IICBA components |
| * | W3110S.gb | 1,902,991 | 0 | G | A | 72.7% | 29.4 / 11.6 | 22 | T103T (ACC→ACT) | yoaE | fused predicted membrane proteins |
| * | W3110S.gb | 4,103,370 | 0 | A | C | 72.4% | 58.3 / 14.2 | 29 | P79P (CCT→CCG) | greB | transcription elongation factor |
| * | W3110S.gb | 4,412,289 | 0 | C | T | 72.4% | 83.5 / 40.6 | 58 | N318N (AAC→AAT) | rnr | exoribonuclease R, RNase R |
| * | W3110S.gb | 4,457,719 | 0 | C | A | 72.2% | 18.1 / 10.5 | 18 | A155D (GCC→GAC) | ytfT | predicted sugar transporter subunit |
| * | W3110S.gb | 1,247,586 | 0 | T | C | 71.9% | 86.9 / 38.6 | 57 | L456L (TTA→TTG) | treA | periplasmic trehalase |
| * | W3110S.gb | 316,457 | 0 | G | A | 71.9% | 44.4 / 19.4 | 32 | intergenic (‑97/+493) | ykgA/ykgB | predicted DNA‑binding transcriptional regulator/conserved inner membrane protein |
| * | W3110S.gb | 958,895 | 0 | A | T | 71.9% | 48.2 / 19.9 | 32 | E274V (GAA→GTA) | serC | 3‑phosphoserine/phosphohydroxythreonine aminotransferase |