Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A136 F1 I1 R1
|
21 |
250.8 |
15742942 |
95.7% |
15065995 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,193,779 |
G→T |
L143I (CTT→ATT) |
yeiB ← |
conserved inner membrane protein |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,193,779 | 0 | G | T | 99.5%
| 725.1
/ NA
| 191 | L143I (CTT→ATT) | yeiB | conserved inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (59/131); minor base A (0/1); total (59/132) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 221 total aligned reads displayed.
GCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAAGCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAGCCGCCA > REL606/2193706‑2193851
|
gCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATcc < 1:1050806/76‑1 (MQ=255)
cGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATcccc < 2:4726972/76‑1 (MQ=255)
gATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCcca < 1:5885352/76‑1 (MQ=255)
gATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCcca < 2:4116426/76‑1 (MQ=255)
gATGCATCCGGCGTCCAGGCGCGGCTGGGCTGGCTGGCGGAAAACAG‑CCCCCATAACAGCAAAACGCCAATCCcca > 1:5553209/1‑76 (MQ=255)
aTGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCccac < 2:7699270/76‑1 (MQ=255)
gCATCCGGCGTCCAGGCGCGGCTGGGCTGGCTGGCGGGAAATAG‑GCCCAAAAAAAGCAAAAACCCAAACccccccc > 2:7418669/1‑75 (MQ=255)
gCATCCGGCGTCCAGGCGCGGCTGGGCTGGCCCCCCGGAATTTG‑CCCCACTAACAGCAAAAACCCCATCCgcacca > 2:3110075/1‑76 (MQ=255)
cATCCGGCGTCCAGGCGCGGCTGGTGTTGCTGGCGGGAATCCA‑CCCCCAAAACAACAAAAACCCCAACCccaccca > 2:1863575/1‑74 (MQ=255)
cATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAg < 2:5668848/76‑1 (MQ=255)
cATCCGGCGTCCAGGCGCGGCTGGGCTGGCTGTCGGGAAACAGCCCCCAAAAAAACCAAAACGCCAACCCccccca > 2:3945294/1‑76 (MQ=255)
cATCCGGCGTCCAGGCGCGGCTGGGCTGGCTGGCGGGAAACAG‑CCCCCATAACAGCAAAAACCCAAcccccccccg > 1:2374929/1‑74 (MQ=255)
cATCCGGCGTCCAGGCGCGGCTGGGCTGGCTGGCGGGAAACAA‑CCCCCATAACAGCAAAAAGCCAATCCccacccc > 1:2931268/1‑74 (MQ=255)
aTCCGGCGTCCAGGCGCGGCTGGTCTGGCTGGCGGAAAACAG‑CCCCAATAACAGCAAAACGCCAATCCCCCCCAGa > 1:1576463/1‑76 (MQ=255)
tCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGAt < 2:3255051/76‑1 (MQ=255)
ccGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATa < 1:3203162/76‑1 (MQ=255)
ccGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATa < 2:2130888/76‑1 (MQ=255)
cGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATaa < 2:3662774/76‑1 (MQ=255)
ggCGTCCAGGCGCGGCTGGGCTGGCTGTCGGGAATCAG‑CCCCCATAAAAGCAAAAAACCAAACCCCACCAGAaaaa > 1:382738/1‑76 (MQ=255)
ggCGTCCAGGCGCGGCTGGGCTGGCTGTCGGAAAACAA‑CCCCCAATACCGCAAAACACCACACCCCACCAGATaaa > 2:6868827/1‑76 (MQ=255)
gCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAg < 1:282526/76‑1 (MQ=255)
gCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAg < 1:5315360/76‑1 (MQ=255)
cGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGc < 1:4441177/76‑1 (MQ=255)
gTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCa < 1:5210448/76‑1 (MQ=255)
ccAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATg < 2:639061/76‑1 (MQ=255)
ccAGGCGCGGCTGGGCTGGCTGTCGGAAATCAG‑CCCCCATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATg > 1:7081496/1‑76 (MQ=255)
cAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGa < 2:3795982/76‑1 (MQ=255)
aGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGAc < 2:3986787/76‑1 (MQ=255)
ggCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACg < 2:4168596/76‑1 (MQ=255)
ggCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACg < 2:7318296/76‑1 (MQ=255)
ggCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACg < 1:164347/76‑1 (MQ=255)
gcgGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCt < 1:3700264/76‑1 (MQ=255)
gcgGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCt < 2:643282/76‑1 (MQ=255)
ggCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGt < 2:1833670/76‑1 (MQ=255)
gCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTa > 2:4036602/1‑76 (MQ=255)
gCTGGTCTGGCTGTCGGAAATCAG‑CCCCAAGAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTa < 2:1098551/76‑1 (MQ=255)
cTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAt < 2:1401730/76‑1 (MQ=255)
cTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAt < 2:6672653/76‑1 (MQ=255)
cTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAt > 1:2034979/1‑76 (MQ=255)
tGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAGGCATGACGCCTGTAtt > 2:1514178/1‑76 (MQ=255)
tGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt > 1:658073/1‑76 (MQ=255)
tGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt < 1:6420672/76‑1 (MQ=255)
tGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt < 1:3551861/76‑1 (MQ=255)
tGGGCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt < 1:1316138/76‑1 (MQ=255)
ggTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTa < 1:3538213/76‑1 (MQ=255)
ggTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTa < 2:1271414/76‑1 (MQ=255)
gTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaa < 1:2660057/76‑1 (MQ=255)
gTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaa < 1:1844211/76‑1 (MQ=255)
gTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaa < 2:372116/76‑1 (MQ=255)
tCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaaa > 1:2994738/1‑76 (MQ=255)
tCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaaa > 2:2217779/1‑76 (MQ=255)
cTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAAc > 1:3466063/1‑76 (MQ=255)
cTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAAc > 1:2535494/1‑76 (MQ=255)
tGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACa < 2:5348044/76‑1 (MQ=255)
tGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACa > 2:5278763/1‑76 (MQ=255)
ggCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAg < 1:393305/76‑1 (MQ=255)
ggCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAg < 2:2296763/76‑1 (MQ=255)
gCTGTCGGAAATCAG‑ACCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAgg < 1:5917990/76‑1 (MQ=255)
tGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCt < 1:2289149/76‑1 (MQ=255)
tGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCt > 1:7568925/1‑76 (MQ=255)
gTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt < 1:3428586/76‑1 (MQ=255)
gTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt < 2:3583930/76‑1 (MQ=255)
gTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt < 1:609311/76‑1 (MQ=255)
gTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt > 1:5183844/1‑76 (MQ=255)
tCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttt < 1:2969787/76‑1 (MQ=255)
tCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttt < 1:7674619/76‑1 (MQ=255)
cGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt < 2:2012218/76‑1 (MQ=255)
cGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt > 2:4599219/1‑76 (MQ=255)
cGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt < 2:3326340/76‑1 (MQ=255)
cGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt > 1:3635917/1‑76 (MQ=255)
cGGAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt > 1:1464605/1‑76 (MQ=255)
ggAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttttt < 1:2264473/76‑1 (MQ=255)
gAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTa < 2:2080522/76‑1 (MQ=255)
gAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTa > 2:4806376/1‑76 (MQ=255)
gAAATCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTa > 2:470473/1‑76 (MQ=255)
aaaTCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAc > 1:4148715/1‑76 (MQ=255)
aTCAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCg < 2:7070479/76‑1 (MQ=255)
cAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAt < 1:6943810/76‑1 (MQ=255)
cAG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAt < 1:7686908/76‑1 (MQ=255)
aG‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATg < 2:1923641/76‑1 (MQ=255)
g‑CCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATgg < 2:1324746/76‑1 (MQ=255)
ccccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgc < 2:1718864/76‑1 (MQ=255)
ccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgcgc < 2:5038996/76‑1 (MQ=255)
aaTAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCAt > 2:4191922/1‑76 (MQ=255)
aTAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATc < 1:4350034/76‑1 (MQ=255)
aaCAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcgc > 1:5229954/1‑76 (MQ=255)
aCAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcgcg < 1:401154/76‑1 (MQ=255)
aCAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcgcg < 2:5022201/76‑1 (MQ=255)
aGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCa < 1:7719215/76‑1 (MQ=255)
cAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCAcc > 1:7776955/1‑76 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa > 1:4698347/1‑76 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa < 2:2963330/76‑1 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa < 1:4998198/76‑1 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa < 2:4682532/76‑1 (MQ=255)
aaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgc > 1:4901683/1‑76 (MQ=255)
aaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgc < 1:2638925/76‑1 (MQ=255)
aCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgcc < 1:3226104/76‑1 (MQ=255)
ccAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgccgcc > 1:7422654/1‑76 (MQ=255)
cAATCCCCACCAGATAAAGCATGCCGCCTGTATTAAACAGGTTTCTTACCGATGGCGCATCGCGCCCCAGCCGCca < 2:6071924/76‑1 (MQ=255)
cAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAGCCGCca > 1:4548383/1‑76 (MQ=255)
|
GCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAG‑CCCCAATAACAGCAAAACGCCAAGCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAGCCGCCA > REL606/2193706‑2193851
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A