Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A120 F1 I1 R1
|
20 |
248.8 |
16334864 |
93.0% |
15191423 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,193,779 |
G→T |
L143I (CTT→ATT) |
yeiB ← |
conserved inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,193,779 | 0 | G | T | 100.0%
| 682.9
/ NA
| 188 | L143I (CTT→ATT) | yeiB | conserved inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (68/120); total (68/120) |
Only 100 of 201 total aligned reads displayed.
GCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAGCCGCCA > REL606/2193706‑2193851
|
ccGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATccc < 1:6011236/76‑1 (MQ=255)
ccGATGCATCCGGCGTCCAGGCGCGGCTGGGCTGGCTGGCCGGAATTAAGCCCCAA‑AAAAACAAaaacccaaaccc > 2:3885620/1‑76 (MQ=255)
cGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATcccc < 2:4981396/76‑1 (MQ=255)
attcATCCGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCccac < 2:5767940/73‑1 (MQ=255)
aTGCATCCGGCGTCCAGGCGCGGCTGGTCTGGTT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCccac < 2:4610189/76‑1 (MQ=255)
tGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCccacc < 1:4805016/76‑1 (MQ=255)
gCATCCGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCccacca < 2:2567557/76‑1 (MQ=255)
gCATCCGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCccacca < 1:365618/76‑1 (MQ=255)
gCATCCGGCGTCCAGGCGCGGCTGGGCTGGCT‑GTCGGGAAACAGCCCCCATAACAGCCAAAAGCCCAACCccccca > 2:775702/1‑76 (MQ=255)
ccGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATa < 1:7803475/76‑1 (MQ=255)
ccGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATa < 1:4316440/76‑1 (MQ=255)
cGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATaa < 1:1485694/76‑1 (MQ=255)
cGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATaa < 1:5371713/76‑1 (MQ=255)
cGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATaa < 1:514582/76‑1 (MQ=255)
cGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATaa < 1:2189456/76‑1 (MQ=255)
ggCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATaaa < 2:262124/76‑1 (MQ=255)
ggCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATaaa < 1:6530552/76‑1 (MQ=255)
ggCGTCCAGGCGCGGCTGGGCTGGCT‑GGCGGAAAACACCCCCAATAACAACAAAACGCCAAACCCCACCAGATaaa > 1:3138236/1‑76 (MQ=255)
cGTCCAGGCGCGGCTGGGCTGGCT‑GTCGGAAAACAGCCCCCATAAAAACAAAAAGACAACTCCCACCCGGTAAAga > 2:5504301/1‑75 (MQ=255)
aGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGAc < 1:2303119/76‑1 (MQ=255)
cgcgGCTGGGCTGGCT‑GTCGGGAAACAGCCCCAATAAAAGCAAAACGCCCATCCCCACCAGATAAAGCATGACGcc > 2:3320732/1‑76 (MQ=255)
ggCTGGTCTGGCT‑GTCGGAAAACAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGt > 1:929958/1‑76 (MQ=255)
gCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTa < 1:7409523/76‑1 (MQ=255)
cTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAt > 1:1496596/1‑76 (MQ=255)
cTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAt > 2:6835497/1‑76 (MQ=255)
tGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt > 2:4664163/1‑76 (MQ=255)
tGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt < 1:5311798/76‑1 (MQ=255)
tGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt > 2:4064559/1‑76 (MQ=255)
tGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt < 1:68339/76‑1 (MQ=255)
tGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGACTGTAtt > 1:4256745/1‑76 (MQ=255)
ggTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTa > 2:6470719/1‑76 (MQ=255)
gTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaa < 2:6973134/76‑1 (MQ=255)
tCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaaa < 1:4968494/76‑1 (MQ=255)
cTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAAc < 2:1872411/76‑1 (MQ=255)
cTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAAc < 2:5739052/76‑1 (MQ=255)
tGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACa > 1:4033354/1‑76 (MQ=255)
tGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACa > 1:7619133/1‑76 (MQ=255)
gCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAgg < 2:4873792/76‑1 (MQ=255)
gCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAgg < 2:1463941/76‑1 (MQ=255)
cT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGc > 2:3599066/1‑76 (MQ=255)
cT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGc > 2:7707541/1‑76 (MQ=255)
cT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGc > 2:8137682/1‑76 (MQ=255)
cT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGc > 1:3802932/1‑76 (MQ=255)
t‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCt < 2:7503316/76‑1 (MQ=255)
t‑GTCAGAAATCAGCCCCAATAACAGCAAAACGCGAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCt > 2:3572920/1‑76 (MQ=255)
gTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt < 2:3518499/76‑1 (MQ=255)
gTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt < 2:2527443/76‑1 (MQ=255)
gTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt < 2:4838698/76‑1 (MQ=255)
gTCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt < 2:2094077/76‑1 (MQ=255)
tCGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttt < 1:40662/76‑1 (MQ=255)
cGGAAATCGGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt < 2:4084682/76‑1 (MQ=255)
cGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt < 2:1289889/76‑1 (MQ=255)
cGGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt > 2:3682814/1‑76 (MQ=255)
ggAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttttt < 2:2260026/76‑1 (MQ=255)
ggAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttttt < 1:1096705/76‑1 (MQ=255)
ggAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttttt > 1:5476344/1‑76 (MQ=255)
ggAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttttt < 1:1877659/76‑1 (MQ=255)
ggAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttttt < 1:6206162/76‑1 (MQ=255)
ggAAAGCAGCACCAATAACAGCAAAACGTCAATCCCCCCCAGATAAAGCATGACCCCTGGAGTAAACAGGCttttt < 2:6414333/76‑1 (MQ=255)
gAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTa < 2:2341505/76‑1 (MQ=255)
gAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTa < 2:5571204/76‑1 (MQ=255)
gAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTa < 1:3753771/76‑1 (MQ=255)
aaaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAc < 2:5992258/76‑1 (MQ=255)
aaaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAc > 2:3189778/1‑76 (MQ=255)
aaaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAc > 2:3069137/1‑76 (MQ=255)
aaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAcc > 1:2669446/1‑76 (MQ=255)
aTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCg < 2:6176678/76‑1 (MQ=255)
aTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCg < 1:3496287/76‑1 (MQ=255)
tCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGa < 2:7320628/76‑1 (MQ=255)
cAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAt < 2:4450342/76‑1 (MQ=255)
cgCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATg < 2:6591085/75‑1 (MQ=255)
aGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATg < 2:5125531/76‑1 (MQ=255)
aGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATg > 1:837380/1‑76 (MQ=255)
gCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATgg < 2:4580021/76‑1 (MQ=255)
ccccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgc < 1:7320630/76‑1 (MQ=255)
ccccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgc < 2:7090109/76‑1 (MQ=255)
ccccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgc < 2:1557143/76‑1 (MQ=255)
cccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgcg > 1:7862184/1‑76 (MQ=255)
ccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgcgc > 1:7875810/1‑76 (MQ=255)
cAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCa > 1:7217250/1‑76 (MQ=255)
aaTAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCAt < 1:1619679/76‑1 (MQ=255)
aaTAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCAt > 1:2256878/1‑76 (MQ=255)
aTAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATc > 2:7860298/1‑76 (MQ=255)
aTAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATc > 2:1804662/1‑76 (MQ=255)
aTAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATc > 1:7724524/1‑76 (MQ=255)
tAACAGCAAACCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcg > 1:1787875/1‑76 (MQ=255)
tAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcg > 2:1626971/1‑76 (MQ=255)
tAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcg < 1:2951268/76‑1 (MQ=255)
aaCAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcgc > 1:3427490/1‑76 (MQ=255)
aaCAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcgc > 1:5646548/1‑76 (MQ=255)
aaCAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcgc > 1:7064662/1‑76 (MQ=255)
cAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCgcgc < 2:2755446/76‑1 (MQ=255)
gCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCAc > 2:338744/1‑76 (MQ=255)
gCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCAc < 2:3987867/76‑1 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa < 2:2170003/76‑1 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa < 1:4654708/76‑1 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa < 2:4100717/76‑1 (MQ=255)
aaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgc > 2:6356733/1‑76 (MQ=255)
gCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgccgc > 2:2868380/1‑76 (MQ=255)
ccAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgccgcc > 2:7685581/1‑76 (MQ=255)
|
GCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCT‑GTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAGCCGCCA > REL606/2193706‑2193851
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
