Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I1 R1
|
15 |
61.9 |
4096487 |
94.5% |
3871180 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,193,779 |
G→T |
L143I (CTT→ATT) |
yeiB ← |
conserved inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,193,779 | 0 | G | T | 100.0%
| 170.9
/ NA
| 53 | L143I (CTT→ATT) | yeiB | conserved inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (30/23); total (30/23) |
CGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAGCCGCC > REL606/2193708‑2193850
|
cGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATcccc > 2:507720/1‑76 (MQ=255)
tGCATCCGGCGTCCGGGAGCGGGTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCccacc < 1:103938/76‑1 (MQ=255)
gCAGCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCccacca < 2:973346/76‑1 (MQ=255)
cATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAg > 1:984506/1‑76 (MQ=255)
cATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAg > 1:1106524/1‑76 (MQ=255)
aTCCGGCGTCCAGGCGCGGCTGGACTGCCTGTCGGGAAAGCA‑CCCCGATTAAAGCGAAACGCCAATACCCGCCAGa > 2:799197/1‑76 (MQ=255)
tCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGAt > 2:840020/1‑76 (MQ=255)
tCCGGCGTCCAGGCGCGGCTGGTCTGGCTGGC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCCGAt > 2:1436704/1‑76 (MQ=255)
cGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATaa > 2:1762287/1‑76 (MQ=255)
ggCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATaaa < 1:1342144/76‑1 (MQ=255)
ggCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATaaa > 1:1504416/1‑76 (MQ=255)
gTCCAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCa > 2:1590975/1‑76 (MQ=255)
ccAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATg < 2:729661/76‑1 (MQ=255)
ccAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATg < 1:1001507/76‑1 (MQ=255)
aGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGAc > 2:1410922/1‑76 (MQ=255)
aGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGAc < 1:749892/76‑1 (MQ=255)
gcgGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCt < 1:1433984/76‑1 (MQ=255)
cgGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTg < 1:665371/76‑1 (MQ=255)
cgGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTg < 2:688370/76‑1 (MQ=255)
cgGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTg > 2:1788031/1‑76 (MQ=255)
cTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAt < 1:1854857/76‑1 (MQ=255)
cTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAt > 2:1316994/1‑76 (MQ=255)
tGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt < 1:553942/76‑1 (MQ=255)
gTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGATGCCTGTATTaa < 1:116932/76‑1 (MQ=255)
tCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaaa < 1:1948854/76‑1 (MQ=255)
tGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACa > 1:1310084/1‑76 (MQ=255)
tGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACa > 2:143193/1‑76 (MQ=255)
tGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACa > 1:524875/1‑76 (MQ=255)
gCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAgg < 2:1840777/76‑1 (MQ=255)
gCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAgg > 2:1868645/1‑76 (MQ=255)
tGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCt > 1:1597005/1‑76 (MQ=255)
gTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt < 2:1493108/76‑1 (MQ=255)
tC‑GGAAATCAGCCCCAATAACAGCAAATCGCTAANCCCCGCCNCANACNGCATAACGCCTGTATTAAACAGGCttt > 1:1768119/1‑76 (MQ=255)
tC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttt > 2:781495/1‑76 (MQ=255)
c‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt > 1:339549/1‑76 (MQ=255)
ggAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttttt < 2:1809280/76‑1 (MQ=255)
gAAATCAGCCCCAATAACAGCAAACCGCNGATCCCCACCAGATAAAGCTTNACGCCTGTATTAAACAGGCTTTTTa > 1:293433/1‑76 (MQ=255)
aaaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAc > 2:1262864/1‑76 (MQ=255)
aaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAcc > 2:781176/1‑76 (MQ=255)
aTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCg > 2:434834/1‑76 (MQ=255)
cAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAt > 1:1863999/1‑76 (MQ=255)
tAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcg > 2:1403930/1‑76 (MQ=255)
tAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcg < 2:1975108/76‑1 (MQ=255)
tAACAGCAAAACGCCAATCACCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAAGGCGCATcg > 2:131725/1‑76 (MQ=255)
cAAAACGCCAATCCCCACCNGNTCAAGCANGACGCCTGTATTACACAGGCTNTTNACAGATGGCGCATCGCGCAcc < 2:293433/76‑1 (MQ=255)
cAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGTCTTTTTACCGATGGCGCATCGCGCAcc > 1:214449/1‑76 (MQ=255)
cAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCAcc < 1:1474225/76‑1 (MQ=255)
cAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGACGGCGCATCGCGCAcc > 1:1695574/1‑76 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa > 1:1230124/1‑76 (MQ=255)
aaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAg < 1:1625983/76‑1 (MQ=255)
aaCGCCAATCCCCACCAGCTAAAGCATNACNCCNGTCTTAANCATGCTCTTTACCGATGGCGCATCGCGCACCAgc < 1:1762288/76‑1 (MQ=255)
aaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgc < 1:1026210/76‑1 (MQ=255)
aCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgcc > 2:1288106/1‑76 (MQ=255)
ccAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgccgcc < 2:1519940/76‑1 (MQ=255)
ccAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgccgcc > 1:279664/1‑76 (MQ=255)
|
CGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAGCCGCC > REL606/2193708‑2193850
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
