Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A107 F1 I1 R1
|
19 |
326.9 |
20855348 |
93.1% |
19416328 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,193,779 |
G→T |
L143I (CTT→ATT) |
yeiB ← |
conserved inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,193,779 | 0 | G | T | 99.6%
| 911.0
/ NA
| 240 | L143I (CTT→ATT) | yeiB | conserved inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (79/160); minor base A (0/1); total (79/161) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 276 total aligned reads displayed.
GCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAGCCGCCA > REL606/2193706‑2193851
|
cGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATcccc < 1:2402870/76‑1 (MQ=255)
cGATGCATCCGGCGTCCAGGCGCGGCTGGGCTGGCTGT‑C‑GGGAAAAAGCCCCCATAACAACAAAACACCCATcccc > 1:3791320/1‑76 (MQ=255)
aTGCATCCGGCGTCCAGGCGCGGCTGGGCTGGCTGG‑C‑GGGAAACCCGCCCAAAAAAAGAAAAAAGCCCAAACccac > 2:5299681/1‑76 (MQ=255)
tGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCccacc < 1:5462934/76‑1 (MQ=255)
tGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCccacc < 2:2213191/76‑1 (MQ=255)
gCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCccacca < 2:6072670/76‑1 (MQ=255)
cATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAg < 1:6613156/76‑1 (MQ=255)
cATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAg < 2:511721/76‑1 (MQ=255)
aTCCGGCGTCCAGGCGCGGCTGGGCTTGCTGC‑G‑GGGAACGAACCCCAAAAACAACGAAAACCCCACACccaccaca > 2:5637157/1‑74 (MQ=255)
aTCCGGCGTCCAGGCGCGGCTGGGCTGGGTGT‑CGGGAAAACACCCCAAAAAACACCAAAACCCAAACCCcccccaa > 2:8451981/1‑75 (MQ=255)
aTCCGGCGTCCAGGCGCGGCTGGGCTGGCTGG‑C‑GGGAAACAGCCCCCAAAAAAACAAAAAGCCCAACcccccccaa > 2:5582802/1‑73 (MQ=255)
tCCGGCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGAt < 2:1253506/76‑1 (MQ=255)
ccGGCGTCCAGGCGCGGCTGGGCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATa > 1:9028014/1‑76 (MQ=255)
ggCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATaaa < 2:2363786/76‑1 (MQ=255)
ggCGTCCAGGCGCGGCTGGGCTGGCTGT‑C‑GGGAAATAGCCCCCATAACCGCAAAACGCCAACCCCCACCAGATaaa > 1:3508223/1‑76 (MQ=255)
gCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAg < 2:6659207/76‑1 (MQ=255)
gCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAg < 2:106784/76‑1 (MQ=255)
gCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAAAGCCAATCCCCACCAGATAAAg > 1:4576932/1‑76 (MQ=255)
cGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGc < 2:1568562/76‑1 (MQ=255)
cGTCCAGGCGCGGCTGGGCTGGCTGG‑C‑GGAAAAAACCCCCAAAAAAAGCAAAAAACCAACCCCCCCCCAAAAAAGc > 2:6427896/1‑76 (MQ=255)
gTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAACAAAACGCCAATCCCCCCCAGATAAAACa > 1:8464487/1‑76 (MQ=255)
tCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCAt < 2:6852409/76‑1 (MQ=255)
tCCAGGCGCGGCTGGGCTGGCTGT‑C‑GGGAAACAACCCCCAAAACAGCAAAACGCCCAACCCCCCCCCATAAAACAt > 2:5435649/1‑76 (MQ=255)
cAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGa < 2:3553564/76‑1 (MQ=255)
cAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGa < 2:8198469/76‑1 (MQ=255)
cAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGa < 1:1734353/76‑1 (MQ=255)
aGGCGCGGCTGGTCTCGCTGTGC‑GAAAATACGCCCCAA‑AACCGGAAAACACCCAACCCCACCAGAAAAAGCAAGAc > 2:7730870/1‑76 (MQ=255)
ggCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACg < 1:5750281/76‑1 (MQ=255)
gcgcGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGc < 2:101162/76‑1 (MQ=255)
cgcgGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGcc < 1:9355406/76‑1 (MQ=255)
gcgGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCt < 1:9532547/76‑1 (MQ=255)
cgGCTGGTCTGGCTGT‑G‑GGAAAACAGCCCCAAAAACAACAAAACGACAATCCCCCCCAGATAAAACATGCCGCCTg > 2:7474067/1‑76 (MQ=255)
ggCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGt < 1:113605/76‑1 (MQ=255)
gCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTa < 1:9773577/76‑1 (MQ=255)
gCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTa < 1:8012512/76‑1 (MQ=255)
cTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAt > 1:2683756/1‑76 (MQ=255)
cTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAt < 1:8269120/76‑1 (MQ=255)
cTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAt > 1:7084928/1‑76 (MQ=255)
cTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAt > 1:594257/1‑76 (MQ=255)
tGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt < 1:1514619/76‑1 (MQ=255)
tGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt < 1:1954156/76‑1 (MQ=255)
tGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt > 1:3371037/1‑76 (MQ=255)
ggTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTa < 2:9285234/76‑1 (MQ=255)
ggTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTa > 1:3659500/1‑76 (MQ=255)
ggTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTa < 1:5331570/76‑1 (MQ=255)
gTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaa < 2:4404850/76‑1 (MQ=255)
gTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaa < 1:5555638/76‑1 (MQ=255)
cTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAAc > 2:8175134/1‑76 (MQ=255)
cTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAAc < 1:8141619/76‑1 (MQ=255)
tGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACa > 1:5187914/1‑76 (MQ=255)
gCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAgg < 1:469941/76‑1 (MQ=255)
gCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAgg < 1:9786340/76‑1 (MQ=255)
tGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCt > 1:6364678/1‑76 (MQ=255)
tGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCt > 1:7596001/1‑76 (MQ=255)
tGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCt > 1:4108034/1‑76 (MQ=255)
tt‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt < 2:1798785/75‑1 (MQ=255)
gT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt < 1:2301850/76‑1 (MQ=255)
c‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt < 1:7385420/76‑1 (MQ=255)
c‑GGAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt > 2:2649721/1‑76 (MQ=255)
ggAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttttt > 2:8879567/1‑76 (MQ=255)
ggAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttttt > 1:3610024/1‑76 (MQ=255)
ggAAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttttt > 2:4835450/1‑76 (MQ=255)
aaaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAc > 1:4355963/1‑76 (MQ=255)
aaaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAc < 2:7901418/76‑1 (MQ=255)
aaaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAc < 2:2880389/76‑1 (MQ=255)
aaaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAc < 1:7946292/76‑1 (MQ=255)
aTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCg < 1:7160578/76‑1 (MQ=255)
aTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCg < 2:910083/76‑1 (MQ=255)
cAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAt > 2:2441614/1‑76 (MQ=255)
gCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATgg < 1:3220463/76‑1 (MQ=255)
gCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATgg < 2:3654844/76‑1 (MQ=255)
ccccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATgga > 2:5162564/1‑75 (MQ=255)
ccccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgc < 2:9028014/76‑1 (MQ=255)
caccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgc < 2:3339530/74‑1 (MQ=255)
cccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgcg < 2:2030717/76‑1 (MQ=255)
ccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgcgc > 1:1401943/1‑76 (MQ=255)
ccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgcgc > 2:5865612/1‑76 (MQ=255)
cAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCa > 1:2997629/1‑76 (MQ=255)
cAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCa > 1:6551401/1‑76 (MQ=255)
cAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCa < 1:2189591/76‑1 (MQ=255)
cAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCa > 1:6270372/1‑76 (MQ=255)
cAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCa > 1:4777017/1‑76 (MQ=255)
aaTAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCAt > 2:9772408/1‑76 (MQ=255)
tAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcg < 2:5340887/76‑1 (MQ=255)
tAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcg < 2:3242441/76‑1 (MQ=255)
aaCAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcgc > 2:7181718/1‑76 (MQ=255)
aaCAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcgc > 1:9267251/1‑76 (MQ=255)
aGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCa > 1:7417422/1‑76 (MQ=255)
cAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCagc > 1:8932709/1‑74 (MQ=255)
cAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCAcc < 2:9616444/76‑1 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa < 2:10358690/76‑1 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa > 1:2143587/1‑76 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa < 2:1279531/76‑1 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa < 2:1752497/76‑1 (MQ=255)
aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa < 2:4142274/76‑1 (MQ=255)
aaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAg < 2:4713387/76‑1 (MQ=255)
aCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgcc < 2:6361345/76‑1 (MQ=255)
ccAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCCCCAgccgcc < 1:6137328/76‑1 (MQ=255)
ccAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgccgcc > 1:10167997/1‑76 (MQ=255)
ccAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgccgcc > 1:10011573/1‑76 (MQ=255)
|
GCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGT‑C‑GGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAGCCGCCA > REL606/2193706‑2193851
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
