Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A138 F1 I1 R1	17	163.5	10262604	95.7%	9821312	76.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	REL606	2,193,779	G→T	L143I (CTT→ATT)	yeiB ←	conserved inner membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	REL606	2,193,779	0	G	T	99.0%	364.7 / NA	99	L143I (CTT→ATT)	yeiB	conserved inner membrane protein
Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (38/59); minor base C (0/1); total (38/61)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 116 total aligned reads displayed.

GCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAGCCGCCA  >  REL606/2193706‑2193851

gCCGATGCATCCGGCGTCCAGGCGCGGCTGGGCTGGCTGTC‑GG‑GAAACAGCCCCAAAAAAAACAAAAAGCCAAAcc                                                                        >  1:1416213/1‑76 (MQ=255)

  cGATGCATCCGGCGTCCAGGCGCGGCTGGGCTGGCTGTC‑GG‑GAAACAGCCCCCAAAAAAGCAAAACACCAAAcccc                                                                      >  1:2629129/1‑76 (MQ=255)

    aTGCATCCGGCGTCCTGGCGCGGCTGGTCTGGCGGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCccac                                                                    <  1:622634/76‑1 (MQ=255)

    aTGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCccac                                                                    <  1:3970546/76‑1 (MQ=255)

     tGCATCCGGCGTCCAGGCGCGGCTGGGCTGGGTGTC‑GG‑GAAACAGCCCCAATAACAGCAAAACACCAAACCccacc                                                                   >  1:1751765/1‑76 (MQ=255)

      gCATCCGGCGTCCAGGCGCGGCTGGGCTGGCTGTC‑GG‑GAATCAGCCCCAATAACAGCAAAACGCCAATCCccccca                                                                  >  1:2354231/1‑76 (MQ=255)

       cATCCGGCGTCCAGGCGCGGCTGGGCTGGCTGTT‑GG‑GAAACAGCCCCAAAAAACACAAAAAGCCCAACcccccccg                                                                 >  1:2927440/1‑74 (MQ=255)

        aTCCGGCGTCCAGGCGCGGCTGGTCTTGCTGTC‑GG‑GAATAAGGCCCCATAACAGCAAAAAGCCAAACCCCACCAGa                                                                >  2:3676798/1‑76 (MQ=255)

        aTCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTT‑GGTAAAAAAGCCCCACAAAAAG‑AAAACACCAAAACccaccaaa                                                                >  2:1505523/1‑74 (MQ=255)

        aTCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GG‑GAATAAGCCCCAAAAAACGCAAAAAGCCAATCCccaccaca                                                                >  1:4993388/1‑74 (MQ=255)

        aTCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCCCCAGa                                                                <  2:1836117/76‑1 (MQ=255)

        aTCCGGCGTCCAGGCGCGGCTGGTCTGGCTGGT‑GG‑GAATTAACCCCAAAAACAACAAAAAGCCAAACCccacccaa                                                                >  2:4780126/1‑73 (MQ=255)

        aTCCGGCGTCCAGGCGCGGCTGGGCTGGCTGTCGGG‑AAACCGGCCCCCA‑AACAGCCAAACGCCAATCCCCCCCAGa                                                                >  2:4696903/1‑76 (MQ=255)

         tCCGGCGTCCAGGCGCGGCTGGGCTGGCTGTC‑GG‑GAAACAGCCCCAATAACAGCAAAACGCCAAAACccaccacaa                                                               >  1:4136720/1‑73 (MQ=255)

          ccGGCGTCCAGGCGCGGCTGGGCTGGCTGTC‑GG‑GAAACAGCCCCAATAAAAGCAAAACGCCAAACCCCCCCCGATa                                                              >  1:180629/1‑76 (MQ=255)

           cGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATaa                                                             <  1:3753322/76‑1 (MQ=255)

            ggCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATaaa                                                            <  1:2553074/76‑1 (MQ=255)

            ggCGTCCAGGCGCGGCTGGGCTGGCTGTC‑GG‑GAAACAGCCCCCATAAAAGCAAAAAGCCCAACCCCCCCCGATaaa                                                            >  2:3894983/1‑76 (MQ=255)

                tCCAGGCGCGGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCAt                                                        <  2:4691699/76‑1 (MQ=255)

                tCCAGGCGCGGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCAt                                                        <  2:3380906/76‑1 (MQ=255)

                tCCAGGCGCGGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCAt                                                        <  2:2985736/76‑1 (MQ=255)

                tCCAGGCGCGGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCAt                                                        <  2:3137974/76‑1 (MQ=255)

                 ccAGGCGCGGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATg                                                       <  1:4891741/76‑1 (MQ=255)

                 ccAGGCGCGGCTGGGCTGGCTGTC‑GG‑GAATCAGCCCCCATAAAAACCAAACGCCAAACCCCACCCAATAAAGCaag                                                       >  2:1254213/1‑74 (MQ=255)

                      cgcgGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGcc                                                  <  2:3081458/76‑1 (MQ=255)

                       gcgGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCt                                                 <  2:2411704/76‑1 (MQ=255)

                       gcgGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCt                                                 <  1:1809741/76‑1 (MQ=255)

                        cgGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTg                                                <  2:5034390/76‑1 (MQ=255)

                         ggCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGt                                               <  1:4827899/76‑1 (MQ=255)

                           cTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAt                                             >  1:503763/1‑76 (MQ=255)

                            tGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTAtt                                            <  1:1674639/76‑1 (MQ=255)

                              gTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaa                                          >  2:1157845/1‑76 (MQ=255)

                              gTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaa                                          <  2:3045507/76‑1 (MQ=255)

                              gTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaa                                          <  2:2653647/76‑1 (MQ=255)

                               tCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaaa                                         <  2:4766946/76‑1 (MQ=255)

                               tCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTaaa                                         <  2:4613769/76‑1 (MQ=255)

                                cTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAAc                                        >  1:850924/1‑76 (MQ=255)

                                cTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAAc                                        >  1:383064/1‑76 (MQ=255)

                                cTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAAc                                        <  2:2682336/76‑1 (MQ=255)

                                cTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAAc                                        <  1:1116629/76‑1 (MQ=255)

                                  ggCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAg                                      <  1:1503739/76‑1 (MQ=255)

                                  ggCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAg                                      <  1:2842807/76‑1 (MQ=255)

                                    cTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGc                                    >  1:425346/1‑76 (MQ=255)

                                     tGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCt                                   >  2:2247534/1‑76 (MQ=255)

                                      gTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt                                  >  1:4009871/1‑76 (MQ=255)

                                      gTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtt                                  <  2:1369425/76‑1 (MQ=255)

                                       tC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttt                                 <  2:3167882/76‑1 (MQ=255)

                                       tC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttt                                 >  1:1943561/1‑76 (MQ=255)

                                       tC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttt                                 <  2:2977429/76‑1 (MQ=255)

                                        c‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt                                <  1:1247901/76‑1 (MQ=255)

                                        c‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCtttt                                >  2:3613358/1‑76 (MQ=255)

                                          gg‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttttt                               >  1:3362851/1‑76 (MQ=255)

                                          gg‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCttttt                               <  2:693082/76‑1 (MQ=255)

                                           g‑AAATCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTa                              <  2:3722915/76‑1 (MQ=255)

                                             aaaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAc                             >  2:3495550/1‑76 (MQ=255)

                                             aaaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAc                             >  1:113896/1‑76 (MQ=255)

                                             aaaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAc                             >  2:2466170/1‑76 (MQ=255)

                                              aaTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTAcc                            >  2:4510820/1‑76 (MQ=255)

                                               aTCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCg                           <  1:2381854/76‑1 (MQ=255)

                                                tCAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGa                          <  1:140468/76‑1 (MQ=255)

                                                 cAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAt                         <  2:2695193/76‑1 (MQ=255)

                                                 cAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAt                         <  1:5121866/76‑1 (MQ=255)

                                                 cAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAt                         <  2:2808510/76‑1 (MQ=255)

                                                 cAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAt                         <  2:2190106/76‑1 (MQ=255)

                                                 cAGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAt                         >  2:1873061/1‑76 (MQ=255)

                                                 cAGCCCCAATAACAGCAAAACGCCAAACCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAt                         <  2:1379282/76‑1 (MQ=255)

                                                  aGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATg                        >  1:3196823/1‑76 (MQ=255)

                                                  aGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATg                        <  1:1515032/76‑1 (MQ=255)

                                                  aGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATg                        >  1:3024199/1‑76 (MQ=255)

                                                  aGCCCCAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATg                        >  1:4885288/1‑76 (MQ=255)

                                                    ccccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgc                      >  1:3519609/1‑76 (MQ=255)

                                                    ccccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGgc                      <  1:486141/76‑1 (MQ=255)

                                                    ccccAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTATTTACCGATGgc                      >  2:3253765/1‑76 (MQ=255)

                                                       cAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCa                   >  2:3821301/1‑76 (MQ=255)

                                                       cAATAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCa                   <  2:3128454/76‑1 (MQ=255)

                                                        aaTAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCAt                  >  2:633921/1‑76 (MQ=255)

                                                        aaTAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCAt                  <  2:5069971/76‑1 (MQ=255)

                                                         aTAACAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATc                 >  2:2095281/1‑76 (MQ=255)

                                                           aaCAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcgc               >  2:4187502/1‑76 (MQ=255)

                                                           aaCAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcgc               <  1:2111638/76‑1 (MQ=255)

                                                           aaCAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcgc               >  2:2395642/1‑76 (MQ=255)

                                                           aaCAGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATcgc               >  2:1097666/1‑76 (MQ=255)

                                                              aGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCa            <  2:4662984/76‑1 (MQ=255)

                                                              aGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCa            <  1:4876143/76‑1 (MQ=255)

                                                              aGCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCa            >  2:1853138/1‑76 (MQ=255)

                                                               gCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCAc           <  2:4683399/76‑1 (MQ=255)

                                                               gCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCAc           >  2:904283/1‑76 (MQ=255)

                                                               gCAAAACGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCAc           <  2:2317177/76‑1 (MQ=255)

                                                                 aaaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCa         <  2:631894/76‑1 (MQ=255)

                                                                  aaaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAg        >  2:1832023/1‑76 (MQ=255)

                                                                   aaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTATCGATGGCGCATCGCGCACCAgc       >  1:3935532/1‑76 (MQ=255)

                                                                   aaCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgc       >  1:871668/1‑76 (MQ=255)

                                                                    aCGCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgcc      <  2:2265133/76‑1 (MQ=255)

                                                                     cGCCAACCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGAGGGCGCATCGCGCCCCAgccg     <  2:1854104/76‑1 (MQ=255)

                                                                      gCCAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgccgc    >  1:2303942/1‑76 (MQ=255)

                                                                       ccAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgccgcc   >  2:4134982/1‑76 (MQ=255)

                                                                       ccAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgccgcc   >  1:3768948/1‑76 (MQ=255)

                                                                       ccAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAgccgcc   >  1:2230657/1‑76 (MQ=255)

                                                                       ccAACCCCCACCAGATAAAGCATGCCGCCTGTATTAAACAGGCTTTTTACCGATAGCGCATCGCGCCCCAgccgcc   <  2:732661/76‑1 (MQ=255)

                                                                        cAATCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAGCCGCca  >  2:4499862/1‑76 (MQ=255)

GCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTC‑GG‑AAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCACCAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATGGCGCATCGCGCACCAGCCGCCA  >  REL606/2193706‑2193851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A