breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
RA | 1,358,437 | C→T | L480F (CTT→TTT) | puuC → | aldehyde dehydrogenase PuuC |
MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 3615 | 3659 | 45 | 3 [1] | [0] 2 | thrB | homoserine kinase |
* | * | ÷ | NZ_CP009273 | 17046 | 17067 | 22 | 2 [1] | [1] 2 | mokC/nhaA | type I toxin‑antitoxin system toxin MokC/Na+/H+ antiporter NhaA |
* | * | ÷ | NZ_CP009273 | 71151 | 71177 | 27 | 2 [1] | [1] 2 | thiB | thiamine ABC transporter substrate binding subunit |
* | * | ÷ | NZ_CP009273 | 80557 | 80592 | 36 | 2 [1] | [1] 2 | leuL/leuO | leu operon leader peptide/transcriptional regulator LeuO |
* | * | ÷ | NZ_CP009273 | 234802 | 234821 | 20 | 2 [1] | [1] 2 | BW25113_RS01095 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 356981 | 357574 | 594 | 3 [0] | [1] 2 | [lacA] | [lacA] |
* | * | ÷ | NZ_CP009273 | 380628 | 380668 | 41 | 3 [1] | [1] 4 | BW25113_RS01880/tauA | PIG‑L family deacetylase/taurine ABC transporter substrate‑binding protein |
* | * | ÷ | NZ_CP009273 | 380899 | 380906 | 8 | 2 [1] | [0] 2 | tauA | taurine ABC transporter substrate‑binding protein |
* | * | ÷ | NZ_CP009273 | 385409 | 385521 | 113 | 2 [1] | [1] 2 | hemB/BW25113_RS01915 | porphobilinogen synthase/outer membrane autotransporter barrel domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 396782 | 396824 | 43 | 2 [1] | [1] 2 | BW25113_RS25915/iraP | hypothetical protein/anti‑adapter protein IraP |
* | * | ÷ | NZ_CP009273 | 418121 | 418153 | 33 | 3 [1] | [1] 2 | malZ | maltodextrin glucosidase |
* | * | ÷ | NZ_CP009273 | 419019 | 419026 | 8 | 2 [0] | [1] 6 | malZ | maltodextrin glucosidase |
* | * | ÷ | NZ_CP009273 | 499948 | 499981 | 34 | 3 [1] | [0] 2 | fsr | fosmidomycin MFS transporter |
* | * | ÷ | NZ_CP009273 | 511667 | 511672 | 6 | 2 [1] | [0] 2 | fetA | iron ABC transporter ATP‑binding protein FetA |
* | * | ÷ | NZ_CP009273 | 518489 | 518643 | 155 | 2 [1] | [1] 2 | ybbP/rhsD | ABC transporter permease/rhs element protein RhsD |
* | * | ÷ | NZ_CP009273 | 524116 | 524156 | 41 | 2 [1] | [0] 3 | BW25113_RS24960 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 525341 | 525362 | 22 | 2 [1] | [1] 2 | ylbG | helix‑turn‑helix domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 532860 | 532899 | 40 | 2 [1] | [0] 2 | glxR | 2‑hydroxy‑3‑oxopropionate reductase |
* | * | ÷ | NZ_CP009273 | 536626 | 536706 | 81 | 2 [1] | [1] 2 | ybbY | uracil/xanthine transporter |
* | * | ÷ | NZ_CP009273 | 541900 | 541943 | 44 | 2 [1] | [0] 2 | allD/fdrA | ureidoglycolate dehydrogenase/acyl‑CoA synthetase FdrA |
* | * | ÷ | NZ_CP009273 | 564159 | 564204 | 46 | 4 [1] | [1] 2 | BW25113_RS25485 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 566166 | 566198 | 33 | 2 [1] | [0] 2 | ybcK/ybcL | recombinase family protein/Raf kinase inhibitor‑like protein YbcL |
* | * | ÷ | NZ_CP009273 | 572304 | 572362 | 59 | 2 [1] | [1] 2 | BW25113_RS02855/essD | porin/phage lysis protein EssD |
* | * | ÷ | NZ_CP009273 | 578861 | 578931 | 71 | 2 [1] | [0] 2 | BW25113_RS26085/appY | tail fiber assembly protein/DNA‑binding transcriptional activator AppY |
* | * | ÷ | NZ_CP009273 | 578970 | 579043 | 74 | 2 [0] | [1] 2 | BW25113_RS26085/appY | tail fiber assembly protein/DNA‑binding transcriptional activator AppY |
* | * | ÷ | NZ_CP009273 | 579507 | 579772 | 266 | 3 [1] | [1] 2 | appY | DNA‑binding transcriptional activator AppY |
* | * | ÷ | NZ_CP009273 | 586870 | 586897 | 28 | 2 [0] | [1] 2 | nrfB | cyclic di‑3',5'‑guanylate‑activated glycosyltransferase NrfB |
* | * | ÷ | NZ_CP009273 | 587962 | 588009 | 48 | 3 [1] | [1] 3 | nrfB | cyclic di‑3',5'‑guanylate‑activated glycosyltransferase NrfB |
* | * | ÷ | NZ_CP009273 | 590310 | 590335 | 26 | 2 [1] | [0] 2 | cusR | copper response regulator transcription factor CusR |
* | * | ÷ | NZ_CP009273 | 600293 | 600298 | 6 | 2 [1] | [0] 2 | nfsB | oxygen‑insensitive NAD(P)H nitroreductase |
* | * | ÷ | NZ_CP009273 | 602528 | 602606 | 79 | 2 [1] | [1] 2 | ybdK | YbdK family carboxylate‑amine ligase |
* | * | ÷ | NZ_CP009273 | 613567 | 613587 | 21 | 2 [1] | [0] 2 | entF/wzz(fepE) | enterobactin non‑ribosomal peptide synthetase EntF/LPS O‑antigen length regulator Wzz(fepE) |
* | * | ÷ | NZ_CP009273 | 614930 | 614938 | 9 | 2 [1] | [0] 3 | fepC | iron‑enterobactin ABC transporter ATP‑binding protein |
* | * | ÷ | NZ_CP009273 | 619466 | 619535 | 70 | 2 [1] | [1] 3 | fepB | Fe2+‑enterobactin ABC transporter substrate‑binding protein |
* | * | ÷ | NZ_CP009273 | 631891 | 631973 | 83 | 2 [1] | [1] 3 | ybdN | phosphoadenosine phosphosulfate reductase |
* | * | ÷ | NZ_CP009273 | 647590 | 647617 | 28 | 2 [1] | [1] 2 | citC/dpiB | [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB |
* | * | ÷ | NZ_CP009273 | 648490 | 648499 | 10 | 2 [1] | [0] 2 | dpiB | sensor histidine kinase DpiB |
* | * | ÷ | NZ_CP009273 | 651578 | 651620 | 43 | 2 [1] | [1] 3 | dcuC/pagP | anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP |
* | * | ÷ | NZ_CP009273 | 656811 | 656822 | 12 | 2 [1] | [1] 2 | ybeF | YbeF family transcriptional regulator |
* | * | ÷ | NZ_CP009273 | 659161 | 659179 | 19 | 3 [1] | [1] 2 | dacA | D‑alanyl‑D‑alanine carboxypeptidase DacA |
* | * | ÷ | NZ_CP009273 | 676022 | 676034 | 13 | 2 [0] | [1] 2 | djlC | co‑chaperone DjlC |
* | * | ÷ | NZ_CP009273 | 678801 | 678848 | 48 | 2 [1] | [1] 3 | hscC | molecular chaperone HscC |
* | * | ÷ | NZ_CP009273 | 682497 | 682553 | 57 | 2 [1] | [1] 2 | gltI | glutamate/aspartate ABC transporter substrate‑binding protein GltI |
* | * | ÷ | NZ_CP009273 | 703328 | 703338 | 11 | 3 [1] | [0] 2 | glnS/chiP | glutamine‑‑tRNA ligase/chitoporin |
* | * | ÷ | NZ_CP009273 | 710755 | 710765 | 11 | 2 [0] | [1] 2 | pgm/BW25113_RS03560 | phosphoglucomutase (alpha‑D‑glucose‑1,6‑bisphosphate‑dependent)/lipoprotein |
* | * | ÷ | NZ_CP009273 | 712094 | 712172 | 79 | 2 [1] | [1] 3 | BW25113_RS03565/BW25113_RS03570 | DUF2625 domain‑containing protein/winged helix‑turn‑helix domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 716252 | 716258 | 7 | 2 [0] | [0] 2 | BW25113_RS26090 | leader peptide SpeFL |
* | * | ÷ | NZ_CP009273 | 716353 | 716541 | 189 | 2 [1] | [1] 3 | [kdpE] | [kdpE] |
* | * | ÷ | NZ_CP009273 | 719304 | 719381 | 78 | 2 [1] | [1] 3 | kdpD | two‑component system sensor histidine kinase KdpD |
* | * | ÷ | NZ_CP009273 | 724632 | 724667 | 36 | 2 [1] | [1] 2 | ybfA | YbfA family protein |
* | * | ÷ | NZ_CP009273 | 729357 | 729409 | 53 | 2 [1] | [1] 3 | BW25113_RS03630 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 729469 | 729472 | 4 | 2 [0] | [0] 2 | BW25113_RS03630 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 731547 | 731875 | 329 | 2 [1] | [1] 2 | [BW25113_RS03640] | [BW25113_RS03640] |
* | * | ÷ | NZ_CP009273 | 743261 | 743276 | 16 | 2 [1] | [0] 2 | abrB/ybgO | AbrB family transcriptional regulator/fimbrial protein |
* | * | ÷ | NZ_CP009273 | 748441 | 748453 | 13 | 2 [0] | [0] 2 | ybgD/gltA | fimbrial protein/citrate synthase |
* | * | ÷ | NZ_CP009273 | 748526 | 748648 | 123 | 3 [1] | [1] 2 | [gltA] | [gltA] |
* | * | ÷ | NZ_CP009273 | 753725 | 753752 | 28 | 2 [0] | [1] 2 | sdhB | succinate dehydrogenase iron‑sulfur subunit SdhB |
* | * | ÷ | NZ_CP009273 | 761368 | 761414 | 47 | 2 [1] | [0] 3 | mngR/mngA | mannosyl‑D‑glycerate transport/metabolism system transcriptional repressor MngR/PTS 2‑O‑a‑mannosyl‑D‑glycerate transporter subunit IIABC |
* | * | ÷ | NZ_CP009273 | 763585 | 763596 | 12 | 2 [1] | [1] 2 | mngB | mannosylglycerate hydrolase |
* | * | ÷ | NZ_CP009273 | 772375 | 772385 | 11 | 2 [0] | [0] 2 | tolA | cell envelope integrity protein TolA |
* | * | ÷ | NZ_CP009273 | 779778 | 779859 | 82 | 2 [1] | [1] 2 | zitB | CDF family zinc transporter ZitB |
* | * | ÷ | NZ_CP009273 | 779973 | 780033 | 61 | 2 [1] | [0] 2 | zitB | CDF family zinc transporter ZitB |
* | * | ÷ | NZ_CP009273 | 786988 | 787051 | 64 | 3 [1] | [1] 2 | galE | UDP‑glucose 4‑epimerase GalE |
* | * | ÷ | NZ_CP009273 | 792055 | 792098 | 44 | 2 [1] | [1] 2 | modC | molybdenum ABC transporter ATP‑binding protein ModC |
* | * | ÷ | NZ_CP009273 | 805393 | 805419 | 27 | 2 [0] | [1] 4 | bioB | biotin synthase BioB |
* | * | ÷ | NZ_CP009273 | 805510 | 805588 | 79 | 2 [1] | [1] 2 | bioB | biotin synthase BioB |
* | * | ÷ | NZ_CP009273 | 818908 | 818921 | 14 | 2 [0] | [1] 2 | clsB | cardiolipin synthase ClsB |
* | * | ÷ | NZ_CP009273 | 819333 | 819380 | 48 | 2 [1] | [1] 2 | ybhP | endonuclease/exonuclease/phosphatase family protein |
* | * | ÷ | NZ_CP009273 | 819471 | 819482 | 12 | 2 [1] | [1] 2 | ybhP | endonuclease/exonuclease/phosphatase family protein |
* | * | ÷ | NZ_CP009273 | 828462 | 828511 | 50 | 2 [0] | [1] 2 | ybiA/dinG | N‑glycosidase YbiA/ATP‑dependent DNA helicase DinG |
* | * | ÷ | NZ_CP009273 | 829182 | 829222 | 41 | 2 [1] | [1] 2 | dinG | ATP‑dependent DNA helicase DinG |
* | * | ÷ | NZ_CP009273 | 830575 | 830601 | 27 | 2 [1] | [1] 3 | dinG | ATP‑dependent DNA helicase DinG |
* | * | ÷ | NZ_CP009273 | 830692 | 830696 | 5 | 3 [1] | [0] 2 | dinG/ybiB | ATP‑dependent DNA helicase DinG/DNA‑binding protein YbiB |
* | * | ÷ | NZ_CP009273 | 835628 | 835678 | 51 | 2 [1] | [1] 2 | fiu | catecholate siderophore receptor Fiu |
* | * | ÷ | NZ_CP009273 | 844510 | 844512 | 3 | 2 [0] | [0] 2 | dps/rhtA | DNA starvation/stationary phase protection protein Dps/threonine/homoserine exporter RhtA |
* | * | ÷ | NZ_CP009273 | 853902 | 853923 | 22 | 2 [1] | [1] 2 | ybiU | DUF1479 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 856258 | 856348 | 91 | 2 [1] | [1] 2 | ybiW | glycyl radical protein |
* | * | ÷ | NZ_CP009273 | 859810 | 859859 | 50 | 2 [1] | [1] 2 | [moeB] | [moeB] |
* | * | ÷ | NZ_CP009273 | 860858 | 860870 | 13 | 2 [1] | [0] 2 | moeA | molybdopterin molybdotransferase MoeA |
* | * | ÷ | NZ_CP009273 | 860948 | 860956 | 9 | 2 [0] | [1] 2 | moeA | molybdopterin molybdotransferase MoeA |
* | * | ÷ | NZ_CP009273 | 861047 | 861076 | 30 | 2 [1] | [0] 2 | moeA | molybdopterin molybdotransferase MoeA |
* | * | ÷ | NZ_CP009273 | 862659 | 862756 | 98 | 2 [1] | [1] 2 | iaaA | beta‑aspartyl‑peptidase |
* | * | ÷ | NZ_CP009273 | 868409 | 868479 | 71 | 2 [1] | [1] 2 | [pdeI] | [pdeI] |
* | * | ÷ | NZ_CP009273 | 871562 | 871660 | 99 | 2 [0] | [1] 2 | dgcI | GGDEF domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 871776 | 871823 | 48 | 2 [1] | [0] 3 | dgcI | GGDEF domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 879741 | 879815 | 75 | 2 [1] | [1] 2 | mdfA | multidrug efflux MFS transporter MdfA |
* | * | ÷ | NZ_CP009273 | 880797 | 880821 | 25 | 2 [1] | [1] 2 | ybjI | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase |
* | * | ÷ | NZ_CP009273 | 886863 | 886905 | 43 | 2 [1] | [1] 2 | nfsA | nitroreductase NfsA |
* | * | ÷ | NZ_CP009273 | 889822 | 889839 | 18 | 2 [1] | [1] 2 | potF | spermidine/putrescine ABC transporter substrate‑binding protein PotF |
* | * | ÷ | NZ_CP009273 | 903023 | 903099 | 77 | 2 [1] | [1] 4 | ybjT | SDR family oxidoreductase |
* | * | ÷ | NZ_CP009273 | 904538 | 904554 | 17 | 3 [1] | [1] 4 | ltaE | low‑specificity L‑threonine aldolase |
* | * | ÷ | NZ_CP009273 | 910910 | 910924 | 15 | 2 [0] | [0] 2 | aqpZ | aquaporin Z |
* | * | ÷ | NZ_CP009273 | 917537 | 917581 | 45 | 2 [1] | [1] 2 | macB | macrolide ABC transporter ATP‑binding protein/permease MacB |
* | * | ÷ | NZ_CP009273 | 930425 | 930456 | 32 | 2 [1] | [0] 2 | ftsK | DNA translocase FtsK |
* | * | ÷ | NZ_CP009273 | 930687 | 930710 | 24 | 3 [1] | [0] 2 | ftsK | DNA translocase FtsK |
* | * | ÷ | NZ_CP009273 | 930974 | 930995 | 22 | 3 [1] | [1] 2 | ftsK | DNA translocase FtsK |
* | * | ÷ | NZ_CP009273 | 932378 | 932429 | 52 | 3 [1] | [1] 3 | ftsK | DNA translocase FtsK |
* | * | ÷ | NZ_CP009273 | 933446 | 933485 | 40 | 2 [1] | [0] 2 | [rarA] | [rarA] |
* | * | ÷ | NZ_CP009273 | 933527 | 933539 | 13 | 2 [0] | [1] 2 | rarA | replication‑associated recombination protein RarA |
* | * | ÷ | NZ_CP009273 | 953610 | 953667 | 58 | 3 [1] | [1] 2 | serC | 3‑phosphoserine/phosphohydroxythreonine transaminase |
* | * | ÷ | NZ_CP009273 | 954608 | 954633 | 26 | 2 [1] | [1] 3 | aroA | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
* | * | ÷ | NZ_CP009273 | 960981 | 960991 | 11 | 3 [1] | [0] 2 | ycaI | ComEC family protein |
* | * | ÷ | NZ_CP009273 | 961115 | 961218 | 104 | 2 [1] | [1] 2 | ycaI | ComEC family protein |
* | * | ÷ | NZ_CP009273 | 968284 | 968460 | 177 | 3 [1] | [1] 2 | elyC | envelope biogenesis factor ElyC |
* | * | ÷ | NZ_CP009273 | 969088 | 969132 | 45 | 2 [0] | [1] 2 | cmoM | tRNA uridine 5‑oxyacetic acid(34) methyltransferase CmoM |
* | * | ÷ | NZ_CP009273 | 971600 | 971659 | 60 | 2 [1] | [1] 2 | mukE | chromosome partition protein MukE |
* | * | ÷ | NZ_CP009273 | 974604 | 974625 | 22 | 2 [1] | [1] 2 | mukB | chromosome partition protein MukB |
* | * | ÷ | NZ_CP009273 | 982690 | 982746 | 57 | 2 [1] | [1] 2 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 982832 | 982857 | 26 | 2 [1] | [1] 2 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 988198 | 988212 | 15 | 2 [1] | [0] 2 | pepN | aminopeptidase N |
* | * | ÷ | NZ_CP009273 | 988941 | 988949 | 9 | 3 [0] | [1] 2 | ssuB | aliphatic sulfonates ABC transporter ATP‑binding protein |
* | * | ÷ | NZ_CP009273 | 990644 | 990651 | 8 | 2 [0] | [0] 2 | ssuD | FMNH2‑dependent alkanesulfonate monooxygenase |
* | * | ÷ | NZ_CP009273 | 993029 | 993080 | 52 | 3 [0] | [1] 2 | ssuE/elfA | NADPH‑dependent FMN reductase/fimbrial protein |
* | * | ÷ | NZ_CP009273 | 997988 | 998006 | 19 | 3 [1] | [0] 2 | elfG | fimbrial protein |
* | * | ÷ | NZ_CP009273 | 1011639 | 1011657 | 19 | 2 [1] | [1] 3 | fabA | bifunctional 3‑hydroxydecanoyl‑ACP dehydratase/trans‑2‑decenoyl‑ACP isomerase |
* | * | ÷ | NZ_CP009273 | 1012088 | 1012088 | 1 | 5 [0] | [0] 3 | ycbZ | Lon protease family protein |
* | * | ÷ | NZ_CP009273 | 1013382 | 1013466 | 85 | 3 [1] | [0] 2 | ycbZ | Lon protease family protein |
* | * | ÷ | NZ_CP009273 | 1021317 | 1021328 | 12 | 2 [0] | [0] 2 | helD | DNA helicase IV |
* | * | ÷ | NZ_CP009273 | 1037531 | 1037541 | 11 | 3 [1] | [1] 2 | etk | tyrosine‑protein kinase |
* | * | ÷ | NZ_CP009273 | 1040098 | 1040114 | 17 | 2 [1] | [0] 2 | etp | protein‑tyrosine‑phosphatase Etp |
* | * | ÷ | NZ_CP009273 | 1053846 | 1053871 | 26 | 2 [1] | [1] 2 | torC | pentaheme c‑type cytochrome TorC |
* | * | ÷ | NZ_CP009273 | 1055733 | 1055777 | 45 | 2 [1] | [1] 3 | torA | trimethylamine‑N‑oxide reductase TorA |
* | * | ÷ | NZ_CP009273 | 1059177 | 1059202 | 26 | 2 [1] | [1] 2 | cbpA | curved DNA‑binding protein |
* | * | ÷ | NZ_CP009273 | 1061525 | 1061543 | 19 | 2 [1] | [1] 2 | agp | bifunctional glucose‑1‑phosphatase/inositol phosphatase |
* | * | ÷ | NZ_CP009273 | 1065495 | 1065551 | 57 | 3 [0] | [1] 2 | rutF | pyrimidine utilization flavin reductase protein F |
* | * | ÷ | NZ_CP009273 | 1071748 | 1071796 | 49 | 2 [1] | [1] 2 | putA | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1075963 | 1076007 | 45 | 6 [1] | [0] 2 | putP | sodium/proline symporter PutP |
* | * | ÷ | NZ_CP009273 | 1077551 | 1077571 | 21 | 2 [1] | [0] 2 | BW25113_RS05295 | FTR1 family protein |
* | * | ÷ | NZ_CP009273 | 1080075 | 1080134 | 60 | 2 [1] | [1] 2 | [efeB] | [efeB] |
* | * | ÷ | NZ_CP009273 | 1098869 | 1098955 | 87 | 2 [1] | [1] 3 | csgD/csgB | biofilm master transcriptional regulator CsgD/curli minor subunit CsgB |
* | * | ÷ | NZ_CP009273 | 1099302 | 1099379 | 78 | 2 [1] | [1] 2 | csgD/csgB | biofilm master transcriptional regulator CsgD/curli minor subunit CsgB |
* | * | ÷ | NZ_CP009273 | 1099966 | 1099999 | 34 | 2 [1] | [1] 2 | csgA | curli major subunit CsgA |
* | * | ÷ | NZ_CP009273 | 1108715 | 1108743 | 29 | 4 [1] | [1] 2 | mdoH | glucans biosynthesis glucosyltransferase MdoH |
* | * | ÷ | NZ_CP009273 | 1116493 | 1116572 | 80 | 3 [1] | [0] 3 | bssS/dinI | biofilm formation regulator BssS/DNA damage‑inducible protein I |
* | * | ÷ | NZ_CP009273 | 1126855 | 1126948 | 94 | 2 [1] | [1] 2 | [flgB]–[flgC] | [flgB],[flgC] |
* | * | ÷ | NZ_CP009273 | 1130364 | 1130393 | 30 | 3 [1] | [1] 2 | flgG | flagellar basal‑body rod protein FlgG |
* | * | ÷ | NZ_CP009273 | 1136213 | 1136260 | 48 | 3 [1] | [1] 2 | flgL | flagellar hook‑associated protein FlgL |
* | * | ÷ | NZ_CP009273 | 1144083 | 1144098 | 16 | 2 [1] | [0] 3 | plsX | phosphate acyltransferase PlsX |
* | * | ÷ | NZ_CP009273 | 1145720 | 1145768 | 49 | 2 [1] | [0] 3 | fabD | ACP S‑malonyltransferase |
* | * | ÷ | NZ_CP009273 | 1159755 | 1159765 | 11 | 2 [1] | [1] 2 | nagZ | beta‑N‑acetylhexosaminidase |
* | * | ÷ | NZ_CP009273 | 1161491 | 1161534 | 44 | 2 [0] | [1] 2 | ycfP/ndh | alpha/beta hydrolase YcfP/NADH‑quinone dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1165746 | 1165843 | 98 | 2 [1] | [1] 2 | [ldtC] | [ldtC] |
* | * | ÷ | NZ_CP009273 | 1169554 | 1169612 | 59 | 2 [1] | [1] 2 | ycfT | acyltransferase family protein |
* | * | ÷ | NZ_CP009273 | 1172182 | 1172316 | 135 | 2 [1] | [1] 2 | lolD | lipoprotein‑releasing ABC transporter ATP‑binding protein LolD |
* | * | ÷ | NZ_CP009273 | 1176065 | 1176112 | 48 | 2 [1] | [0] 2 | ycfZ | TPM domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1176199 | 1176209 | 11 | 2 [0] | [0] 6 | ycfZ | TPM domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1177669 | 1177724 | 56 | 2 [1] | [1] 3 | potD | spermidine/putrescine ABC transporter substrate‑binding protein PotD |
* | * | ÷ | NZ_CP009273 | 1182595 | 1182603 | 9 | 2 [1] | [1] 2 | roxA | [50S ribosomal protein L16]‑arginine 3‑hydroxylase |
* | * | ÷ | NZ_CP009273 | 1182999 | 1183063 | 65 | 2 [1] | [1] 3 | roxA | [50S ribosomal protein L16]‑arginine 3‑hydroxylase |
* | * | ÷ | NZ_CP009273 | 1183300 | 1183456 | 157 | 2 [1] | [1] 2 | roxA | [50S ribosomal protein L16]‑arginine 3‑hydroxylase |
* | * | ÷ | NZ_CP009273 | 1187549 | 1187574 | 26 | 2 [1] | [1] 3 | hflD | high frequency lysogenization protein HflD |
* | * | ÷ | NZ_CP009273 | 1188616 | 1188657 | 42 | 2 [1] | [1] 2 | mnmA | tRNA 2‑thiouridine(34) synthase MnmA |
* | * | ÷ | NZ_CP009273 | 1189077 | 1189092 | 16 | 3 [1] | [0] 2 | mnmA | tRNA 2‑thiouridine(34) synthase MnmA |
* | * | ÷ | NZ_CP009273 | 1191167 | 1191177 | 11 | 3 [0] | [0] 5 | icd | NADP‑dependent isocitrate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1192433 | 1192465 | 33 | 2 [1] | [0] 2 | ymfD | class I SAM‑dependent methyltransferase |
* | * | ÷ | NZ_CP009273 | 1193140 | 1193206 | 67 | 2 [1] | [1] 2 | BW25113_RS05920 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1193741 | 1193751 | 11 | 2 [0] | [0] 2 | BW25113_RS05920/lit | hypothetical protein/cell death peptidase Lit |
* | * | ÷ | NZ_CP009273 | 1193811 | 1193834 | 24 | 2 [0] | [1] 2 | BW25113_RS05920/lit | hypothetical protein/cell death peptidase Lit |
* | * | ÷ | NZ_CP009273 | 1199849 | 1199873 | 25 | 2 [0] | [1] 2 | [BW25113_RS26105]–[BW25113_RS05965] | [BW25113_RS26105],[BW25113_RS05965] |
* | * | ÷ | NZ_CP009273 | 1206654 | 1206772 | 119 | 2 [1] | [1] 2 | mcrA/BW25113_RS23640 | 5‑methylcytosine‑specific endonuclease McrA/isocitrate/isopropylmalate family dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1207520 | 1207613 | 94 | 2 [1] | [0] 2 | iraM/BW25113_RS25985 | anti‑adapter protein IraM/protein YmgK |
* | * | ÷ | NZ_CP009273 | 1207746 | 1207839 | 94 | 2 [1] | [1] 2 | [BW25113_RS25985] | [BW25113_RS25985] |
* | * | ÷ | NZ_CP009273 | 1207930 | 1207978 | 49 | 2 [1] | [1] 3 | BW25113_RS25985/BW25113_RS25535 | protein YmgK/hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1209582 | 1209605 | 24 | 3 [1] | [1] 2 | bluR/bluF | DNA‑binding transcriptional repressor BluR/blue light‑responsive regulator BluF |
* | * | ÷ | NZ_CP009273 | 1209741 | 1209781 | 41 | 2 [0] | [1] 2 | bluF | blue light‑responsive regulator BluF |
* | * | ÷ | NZ_CP009273 | 1212076 | 1212145 | 70 | 2 [0] | [1] 3 | [ariR] | [ariR] |
* | * | ÷ | NZ_CP009273 | 1212285 | 1212293 | 9 | 2 [1] | [1] 2 | BW25113_RS06060 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1215355 | 1215389 | 35 | 2 [0] | [1] 2 | BW25113_RS06070/BW25113_RS25990 | hypothetical protein/autotransporter outer membrane beta‑barrel domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1215987 | 1216047 | 61 | 2 [1] | [1] 2 | BW25113_RS25990 | autotransporter outer membrane beta‑barrel domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1225258 | 1225323 | 66 | 2 [1] | [0] 2 | hlyE | hemolysin HlyE |
* | * | ÷ | NZ_CP009273 | 1225595 | 1225600 | 6 | 2 [0] | [1] 2 | hlyE | hemolysin HlyE |
* | * | ÷ | NZ_CP009273 | 1225912 | 1225993 | 82 | 2 [1] | [1] 2 | hlyE/umuD | hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit |
* | * | ÷ | NZ_CP009273 | 1229742 | 1229779 | 38 | 2 [1] | [0] 2 | nhaB | Na(+)/H(+) antiporter NhaB |
* | * | ÷ | NZ_CP009273 | 1230106 | 1230149 | 44 | 2 [1] | [1] 2 | nhaB | Na(+)/H(+) antiporter NhaB |
* | * | ÷ | NZ_CP009273 | 1231896 | 1231905 | 10 | 4 [0] | [0] 2 | ycgB | SpoVR family protein |
* | * | ÷ | NZ_CP009273 | 1232807 | 1232813 | 7 | 2 [0] | [0] 2 | ycgB/dadA | SpoVR family protein/D‑amino acid dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1235472 | 1235579 | 108 | 2 [1] | [1] 2 | dadX/cvrA | catabolic alanine racemase DadX/potassium/proton antiporter |
* | * | ÷ | NZ_CP009273 | 1238774 | 1238794 | 21 | 2 [0] | [1] 2 | emtA | membrane‑bound lytic murein transglycosylase EmtA |
* | * | ÷ | NZ_CP009273 | 1238992 | 1239036 | 45 | 3 [1] | [1] 3 | emtA | membrane‑bound lytic murein transglycosylase EmtA |
* | * | ÷ | NZ_CP009273 | 1240632 | 1240676 | 45 | 2 [1] | [1] 2 | BW25113_RS06225 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1247144 | 1247172 | 29 | 2 [1] | [1] 2 | dhaR | dihydroxyacetone kinase operon transcriptional regulator DhaR |
* | * | ÷ | NZ_CP009273 | 1253727 | 1253765 | 39 | 2 [1] | [1] 2 | pth | aminoacyl‑tRNA hydrolase |
* | * | ÷ | NZ_CP009273 | 1258820 | 1258858 | 39 | 2 [1] | [1] 2 | lolB | lipoprotein insertase outer membrane protein LolB |
* | * | ÷ | NZ_CP009273 | 1267307 | 1267381 | 75 | 2 [1] | [1] 2 | chaA/chaB | sodium‑potassium/proton antiporter ChaA/putative cation transport regulator ChaB |
* | * | ÷ | NZ_CP009273 | 1274733 | 1274755 | 23 | 2 [1] | [1] 2 | narK | nitrate transporter NarK |
* | * | ÷ | NZ_CP009273 | 1276682 | 1276691 | 10 | 3 [1] | [0] 2 | narG | nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1276977 | 1276983 | 7 | 2 [0] | [0] 2 | narG | nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1277247 | 1277282 | 36 | 2 [1] | [0] 2 | narG | nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1277838 | 1277887 | 50 | 2 [1] | [1] 2 | narG | nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1278554 | 1278578 | 25 | 2 [1] | [1] 2 | narG | nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1284795 | 1284804 | 10 | 2 [1] | [1] 3 | rssA | patatin‑like phospholipase RssA |
* | * | ÷ | NZ_CP009273 | 1285005 | 1285050 | 46 | 2 [0] | [1] 2 | rssA | patatin‑like phospholipase RssA |
* | * | ÷ | NZ_CP009273 | 1299923 | 1299950 | 28 | 2 [1] | [1] 2 | oppD | murein tripeptide/oligopeptide ABC transporter ATP‑binding protein OppD |
* | * | ÷ | NZ_CP009273 | 1302886 | 1302940 | 55 | 2 [1] | [0] 2 | [cls] | [cls] |
* | * | ÷ | NZ_CP009273 | 1306005 | 1306096 | 92 | 2 [1] | [1] 2 | [tonB] | [tonB] |
* | * | ÷ | NZ_CP009273 | 1308077 | 1308153 | 77 | 2 [1] | [1] 3 | BW25113_RS25555/ompW | YkgJ family cysteine cluster protein/outer membrane protein OmpW |
* | * | ÷ | NZ_CP009273 | 1308646 | 1308676 | 31 | 2 [1] | [1] 2 | ompW | outer membrane protein OmpW |
* | * | ÷ | NZ_CP009273 | 1310317 | 1310453 | 137 | 2 [1] | [0] 2 | yciG/trpA | general stress protein/tryptophan synthase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1310877 | 1310929 | 53 | 2 [1] | [1] 2 | trpA | tryptophan synthase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1311586 | 1311630 | 45 | 2 [0] | [1] 2 | trpB | tryptophan synthase subunit beta |
* | * | ÷ | NZ_CP009273 | 1314388 | 1314537 | 150 | 2 [1] | [1] 2 | trpD | bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD |
* | * | ÷ | NZ_CP009273 | 1317138 | 1317173 | 36 | 2 [1] | [1] 2 | trpE | anthranilate synthase component I |
* | * | ÷ | NZ_CP009273 | 1317572 | 1317577 | 6 | 2 [1] | [0] 3 | yciV | RNase AM |
* | * | ÷ | NZ_CP009273 | 1320833 | 1320915 | 83 | 3 [1] | [1] 3 | [yciQ] | [yciQ] |
* | * | ÷ | NZ_CP009273 | 1323363 | 1323399 | 37 | 2 [1] | [1] 3 | [yciK] | [yciK] |
* | * | ÷ | NZ_CP009273 | 1324134 | 1324180 | 47 | 2 [1] | [1] 2 | sohB | protease SohB |
* | * | ÷ | NZ_CP009273 | 1328955 | 1329078 | 124 | 4 [0] | [1] 2 | cysB | HTH‑type transcriptional regulator CysB |
* | * | ÷ | NZ_CP009273 | 1329360 | 1329392 | 33 | 2 [1] | [1] 4 | cysB/ymiA | HTH‑type transcriptional regulator CysB/YmiA family putative membrane protein |
* | * | ÷ | NZ_CP009273 | 1329671 | 1329682 | 12 | 4 [1] | [1] 2 | BW25113_RS06660 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1330896 | 1330905 | 10 | 2 [0] | [0] 2 | acnA | aconitate hydratase AcnA |
* | * | ÷ | NZ_CP009273 | 1333755 | 1333780 | 26 | 2 [1] | [1] 3 | pgpB | phosphatidylglycerophosphatase B |
* | * | ÷ | NZ_CP009273 | 1334848 | 1334875 | 28 | 2 [1] | [1] 2 | lapB | lipopolysaccharide assembly protein LapB |
* | * | ÷ | NZ_CP009273 | 1342716 | 1342742 | 27 | 2 [1] | [1] 2 | rnb | exoribonuclease II |
* | * | ÷ | NZ_CP009273 | 1343504 | 1343534 | 31 | 2 [1] | [1] 3 | yciW | CMD domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1345725 | 1345770 | 46 | 2 [1] | [0] 3 | ycjD | DUF559 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1345993 | 1346096 | 104 | 2 [1] | [1] 2 | [ycjD]–[sapF] | [ycjD],[sapF] |
* | * | ÷ | NZ_CP009273 | 1357228 | 1357246 | 19 | 2 [0] | [1] 2 | puuC | aldehyde dehydrogenase PuuC |
* | * | ÷ | NZ_CP009273 | 1360525 | 1360598 | 74 | 2 [1] | [1] 2 | puuE | 4‑aminobutyrate transaminase |
* | * | ÷ | NZ_CP009273 | 1363730 | 1363756 | 27 | 2 [1] | [1] 2 | pspD | phage shock protein PspD |
* | * | ÷ | NZ_CP009273 | 1372953 | 1373050 | 98 | 2 [1] | [1] 2 | ycjT | kojibiose phosphorylase |
* | * | ÷ | NZ_CP009273 | 1374909 | 1374949 | 41 | 2 [0] | [1] 3 | pgmB | beta‑phosphoglucomutase |
* | * | ÷ | NZ_CP009273 | 1385847 | 1385894 | 48 | 2 [1] | [1] 2 | ycjY | alpha/beta hydrolase |
* | * | ÷ | NZ_CP009273 | 1387768 | 1387776 | 9 | 2 [1] | [0] 3 | mppA | murein tripeptide ABC transporter substrate‑binding protein MppA |
* | * | ÷ | NZ_CP009273 | 1391571 | 1391620 | 50 | 2 [1] | [1] 3 | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
* | * | ÷ | NZ_CP009273 | 1399694 | 1399770 | 77 | 2 [1] | [1] 3 | abgR | LysR family transcriptional regulator |
* | * | ÷ | NZ_CP009273 | 1416421 | 1416480 | 60 | 2 [1] | [0] 2 | ydaV | ATP‑binding protein |
* | * | ÷ | NZ_CP009273 | 1417918 | 1417996 | 79 | 2 [0] | [1] 2 | BW25113_RS26130/trkG | hypothetical protein/Trk system potassium transporter TrkG |
* | * | ÷ | NZ_CP009273 | 1429097 | 1429160 | 64 | 2 [1] | [1] 2 | BW25113_RS25575/uspF | hypothetical protein/universal stress protein UspF |
* | * | ÷ | NZ_CP009273 | 1430115 | 1430125 | 11 | 3 [1] | [0] 2 | ompN | porin OmpN |
* | * | ÷ | NZ_CP009273 | 1430181 | 1430207 | 27 | 2 [0] | [1] 2 | ompN | porin OmpN |
* | * | ÷ | NZ_CP009273 | 1433710 | 1433771 | 62 | 2 [0] | [1] 2 | nifJ | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1444128 | 1444139 | 12 | 2 [1] | [1] 2 | tynA | primary‑amine oxidase |
* | * | ÷ | NZ_CP009273 | 1458451 | 1458473 | 23 | 3 [1] | [1] 3 | paaX | phenylacetic acid degradation operon negative regulatory protein PaaX |
* | * | ÷ | NZ_CP009273 | 1459525 | 1459566 | 42 | 2 [1] | [1] 2 | BW25113_RS25580/BW25113_RS07350 | hypothetical protein/autotransporter domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1489371 | 1489426 | 56 | 2 [1] | [1] 3 | ydcI/ydcJ | LysR substrate‑binding domain‑containing protein/VOC family protein |
* | * | ÷ | NZ_CP009273 | 1503104 | 1503129 | 26 | 3 [1] | [1] 3 | yncJ | YncJ family protein |
* | * | ÷ | NZ_CP009273 | 1503781 | 1503814 | 34 | 2 [0] | [1] 2 | hicB | type II toxin‑antitoxin system antitoxin HicB |
* | * | ÷ | NZ_CP009273 | 1524230 | 1524293 | 64 | 3 [1] | [1] 2 | BW25113_RS07645/BW25113_RS26145 | RHS repeat protein/hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1524384 | 1524470 | 87 | 2 [1] | [1] 3 | [BW25113_RS26145] | [BW25113_RS26145] |
* | * | ÷ | NZ_CP009273 | 1524510 | 1524792 | 283 | 3 [1] | [0] 2 | [BW25113_RS26145]–BW25113_RS25600 | [BW25113_RS26145],BW25113_RS25600 |
* | * | ÷ | NZ_CP009273 | 1524847 | 1524906 | 60 | 2 [0] | [1] 2 | BW25113_RS07655 | ISAs1 family transposase |
* | * | ÷ | NZ_CP009273 | 1527525 | 1527600 | 76 | 2 [1] | [1] 2 | [pptA]–[yddH] | [pptA],[yddH] |
* | * | ÷ | NZ_CP009273 | 1559291 | 1559300 | 10 | 3 [1] | [0] 3 | dosP | oxygen‑sensing cyclic‑di‑GMP phosphodiesterase |
* | * | ÷ | NZ_CP009273 | 1566414 | 1566426 | 13 | 2 [0] | [1] 2 | gadB/pqqL | glutamate decarboxylase/insulinase family protein |
* | * | ÷ | NZ_CP009273 | 1566560 | 1566619 | 60 | 2 [1] | [1] 2 | gadB/pqqL | glutamate decarboxylase/insulinase family protein |
* | * | ÷ | NZ_CP009273 | 1577745 | 1577784 | 40 | 2 [1] | [0] 2 | ydeO | acid stress response transcriptional regulator YdeO |
* | * | ÷ | NZ_CP009273 | 1605028 | 1605055 | 28 | 3 [1] | [1] 3 | uxaB/dgcF | tagaturonate reductase/GGDEF domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1610343 | 1610387 | 45 | 2 [1] | [0] 2 | yneK | putative protein YneK |
* | * | ÷ | NZ_CP009273 | 1618264 | 1618273 | 10 | 2 [1] | [0] 2 | dgcZ/ydeI | diguanylate cyclase DgcZ/YdeI family stress tolerance OB fold protein |
* | * | ÷ | NZ_CP009273 | 1623199 | 1623212 | 14 | 2 [1] | [1] 2 | ydfH | DNA‑binding transcriptional regulator rspR |
* | * | ÷ | NZ_CP009273 | 1625100 | 1625131 | 32 | 2 [0] | [1] 2 | ydfI | mannitol dehydrogenase family protein |
* | * | ÷ | NZ_CP009273 | 1631309 | 1631474 | 166 | 2 [1] | [1] 3 | ydfO | DUF1398 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1635032 | 1635037 | 6 | 2 [0] | [1] 3 | essD/ynfU | phage lysis protein EssD/putative zinc‑binding protein YnfU |
* | * | ÷ | NZ_CP009273 | 1659803 | 1659806 | 4 | 3 [1] | [0] 2 | clcB | voltage‑gated ClC‑type chloride channel ClcB |
* | * | ÷ | NZ_CP009273 | 1671479 | 1671549 | 71 | 2 [1] | [1] 2 | pntA | Re/Si‑specific NAD(P)(+) transhydrogenase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1676762 | 1676796 | 35 | 2 [1] | [1] 4 | rstA | two‑component system response regulator RstA |
* | * | ÷ | NZ_CP009273 | 1723651 | 1723658 | 8 | 2 [1] | [0] 2 | lhr | ATP‑dependent helicase |
* | * | ÷ | NZ_CP009273 | 1729838 | 1729877 | 40 | 4 [1] | [1] 2 | sodB | superoxide dismutase [Fe] |
* | * | ÷ | NZ_CP009273 | 1733868 | 1733906 | 39 | 2 [1] | [1] 2 | punR | DNA‑binding transcriptional activator PunR |
* | * | ÷ | NZ_CP009273 | 1758816 | 1758833 | 18 | 2 [0] | [1] 2 | sufA/ydiH | Fe‑S cluster assembly scaffold SufA/YdiH family protein |
* | * | ÷ | NZ_CP009273 | 1794727 | 1794765 | 39 | 3 [1] | [1] 2 | infC | translation initiation factor IF‑3 |
* | * | ÷ | NZ_CP009273 | 1806941 | 1806969 | 29 | 2 [1] | [1] 2 | BW25113_RS09050 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1822966 | 1823006 | 41 | 2 [1] | [1] 2 | astD | succinylglutamate‑semialdehyde dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1830516 | 1830609 | 94 | 2 [1] | [1] 2 | ynjB | ABC transporter substrate‑binding protein |
* | * | ÷ | NZ_CP009273 | 1837154 | 1837179 | 26 | 2 [1] | [0] 2 | gdhA | NADP‑specific glutamate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1864537 | 1864572 | 36 | 2 [1] | [1] 2 | yeaH/cdgI | YeaH/YhbH family protein/GGDEF domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1918631 | 1918660 | 30 | 2 [1] | [1] 2 | copD | copper homeostasis membrane protein CopD |
* | * | ÷ | NZ_CP009273 | 1944249 | 1944269 | 21 | 2 [1] | [1] 2 | aspS | aspartate‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 1947134 | 1947156 | 23 | 3 [1] | [1] 2 | cmoA | carboxy‑S‑adenosyl‑L‑methionine synthase CmoA |
* | * | ÷ | NZ_CP009273 | 1947235 | 1947286 | 52 | 2 [1] | [1] 2 | cmoA | carboxy‑S‑adenosyl‑L‑methionine synthase CmoA |
* | * | ÷ | NZ_CP009273 | 1952432 | 1952540 | 109 | 2 [1] | [1] 2 | torY/cutC | NapC/NirT family cytochrome c/copper homeostasis protein CutC |
* | * | ÷ | NZ_CP009273 | 1959443 | 1959474 | 32 | 2 [0] | [1] 2 | flhB | flagellar biosynthesis protein FlhB |
* | * | ÷ | NZ_CP009273 | 1972752 | 1972760 | 9 | 20 [0] | [0] 2 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
* | * | ÷ | NZ_CP009273 | 1973115 | 1973143 | 29 | 2 [1] | [0] 3 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
* | * | ÷ | NZ_CP009273 | 1978839 | 1978920 | 82 | 2 [1] | [0] 2 | araF | arabinose ABC transporter substrate‑binding protein AraF |
* | * | ÷ | NZ_CP009273 | 1979063 | 1979078 | 16 | 2 [1] | [0] 2 | araF | arabinose ABC transporter substrate‑binding protein AraF |
* | * | ÷ | NZ_CP009273 | 1991553 | 1991586 | 34 | 2 [1] | [1] 2 | tcyL | cystine ABC transporter permease |
* | * | ÷ | NZ_CP009273 | 2004840 | 2004904 | 65 | 2 [0] | [1] 3 | BW25113_RS10120 | DUF5503 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2016224 | 2016234 | 11 | 2 [0] | [0] 2 | fliQ | flagellar biosynthesis protein FliQ |
* | * | ÷ | NZ_CP009273 | 2017096 | 2017170 | 75 | 2 [0] | [1] 2 | [fliR] | [fliR] |
* | * | ÷ | NZ_CP009273 | 2035713 | 2035806 | 94 | 2 [1] | [1] 2 | zinT/yodB | metal‑binding protein ZinT/cytochrome b |
* | * | ÷ | NZ_CP009273 | 2062117 | 2062132 | 16 | 3 [1] | [0] 2 | BW25113_RS24005 | TonB‑dependent receptor plug domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2073206 | 2073216 | 11 | 3 [0] | [1] 3 | yeeA | FUSC family protein |
* | * | ÷ | NZ_CP009273 | 2092788 | 2092809 | 22 | 3 [1] | [0] 2 | ugd | UDP‑glucose 6‑dehydrogenase |
* | * | ÷ | NZ_CP009273 | 2096851 | 2096861 | 11 | 2 [0] | [0] 2 | wbbL | N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL |
* | * | ÷ | NZ_CP009273 | 2096908 | 2096972 | 65 | 2 [0] | [1] 2 | wbbK | glycosyltransferase family 1 protein |
* | * | ÷ | NZ_CP009273 | 2097272 | 2097389 | 118 | 2 [1] | [1] 2 | wbbK | glycosyltransferase family 1 protein |
* | * | ÷ | NZ_CP009273 | 2101121 | 2101131 | 11 | 2 [1] | [1] 2 | glf | UDP‑galactopyranose mutase |
* | * | ÷ | NZ_CP009273 | 2101560 | 2101661 | 102 | 3 [1] | [1] 2 | glf | UDP‑galactopyranose mutase |
* | * | ÷ | NZ_CP009273 | 2102575 | 2102597 | 23 | 2 [1] | [1] 3 | wzx | O16 family O‑antigen flippase |
* | * | ÷ | NZ_CP009273 | 2103626 | 2103723 | 98 | 2 [1] | [1] 2 | rfbA | glucose‑1‑phosphate thymidylyltransferase RfbA |
* | * | ÷ | NZ_CP009273 | 2132071 | 2132124 | 54 | 2 [1] | [1] 2 | yegH | TerC family protein |
* | * | ÷ | NZ_CP009273 | 2132651 | 2132663 | 13 | 2 [1] | [0] 2 | yegH | TerC family protein |
* | * | ÷ | NZ_CP009273 | 2144482 | 2144603 | 122 | 2 [1] | [1] 2 | yegI/yegJ | protein kinase YegI/DUF2314 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2170517 | 2170553 | 37 | 2 [1] | [1] 2 | gatY | tagatose‑bisphosphate aldolase subunit GatY |
* | * | ÷ | NZ_CP009273 | 2173938 | 2173944 | 7 | 3 [0] | [1] 2 | yegU | ADP‑ribosylglycohydrolase family protein |
* | * | ÷ | NZ_CP009273 | 2185801 | 2185846 | 46 | 2 [0] | [1] 3 | yehD/yehE | fimbrial protein/YehE family protein |
* | * | ÷ | NZ_CP009273 | 2185908 | 2185918 | 11 | 2 [0] | [1] 2 | yehD/yehE | fimbrial protein/YehE family protein |
* | * | ÷ | NZ_CP009273 | 2189862 | 2189899 | 38 | 2 [1] | [1] 2 | metG/BW25113_RS25680 | methionine‑‑tRNA ligase/WGR and DUF4132 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2202407 | 2202422 | 16 | 2 [1] | [1] 2 | yehP | VWA domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2210455 | 2210463 | 9 | 2 [1] | [0] 3 | yehX | glycine betaine ABC transporter ATP binding protein YehX |
* | * | ÷ | NZ_CP009273 | 2210687 | 2210756 | 70 | 3 [1] | [1] 2 | yehX | glycine betaine ABC transporter ATP binding protein YehX |
* | * | ÷ | NZ_CP009273 | 2211007 | 2211078 | 72 | 2 [1] | [1] 2 | yehY | glycine betaine ABC transporter permease YehY |
* | * | ÷ | NZ_CP009273 | 2213028 | 2213074 | 47 | 2 [1] | [1] 2 | osmF/bglX | glycine betaine ABC transporter substrate‑binding protein OsmF/beta‑glucosidase BglX |
* | * | ÷ | NZ_CP009273 | 2215786 | 2215865 | 80 | 3 [1] | [1] 2 | dld | D‑lactate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 2221808 | 2221892 | 85 | 2 [1] | [1] 2 | mdtQ | multidrug resistance outer membrane protein MdtQ |
* | * | ÷ | NZ_CP009273 | 2222285 | 2222320 | 36 | 2 [1] | [0] 2 | mdtQ/yohP | multidrug resistance outer membrane protein MdtQ/protein YohP |
* | * | ÷ | NZ_CP009273 | 2233806 | 2233815 | 10 | 4 [0] | [0] 2 | mglB | galactose/glucose ABC transporter substrate‑binding protein MglB |
* | * | ÷ | NZ_CP009273 | 2250158 | 2250164 | 7 | 2 [1] | [1] 2 | psuT | NupC/NupG family nucleoside CNT transporter |
* | * | ÷ | NZ_CP009273 | 2258187 | 2258231 | 45 | 2 [1] | [1] 2 | setB | sugar efflux transporter SetB |
* | * | ÷ | NZ_CP009273 | 2291529 | 2291540 | 12 | 2 [1] | [0] 5 | napC | cytochrome c‑type protein NapC |
* | * | ÷ | NZ_CP009273 | 2300543 | 2300599 | 57 | 2 [1] | [1] 2 | yojI | microcin J25 efflux ABC transporter YojI |
* | * | ÷ | NZ_CP009273 | 2306388 | 2306489 | 102 | 2 [1] | [1] 2 | ompC/rcsD | porin OmpC/phosphotransferase RcsD |
* | * | ÷ | NZ_CP009273 | 2337695 | 2337869 | 175 | 2 [1] | [1] 2 | yfaL/nrdA | AIDA‑I family autotransporter adhesin YfaL/EhaC/ribonucleoside‑diphosphate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 2348116 | 2348163 | 48 | 2 [0] | [1] 2 | glpB | glycerol‑3‑phosphate dehydrogenase subunit GlpB |
* | * | ÷ | NZ_CP009273 | 2370654 | 2370785 | 132 | 2 [1] | [1] 3 | menH | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
* | * | ÷ | NZ_CP009273 | 2395795 | 2395813 | 19 | 3 [1] | [1] 3 | nuoC | NADH‑quinone oxidoreductase subunit C/D |
* | * | ÷ | NZ_CP009273 | 2400571 | 2400662 | 92 | 3 [1] | [1] 2 | lrhA/alaA | transcriptional regulator LrhA/alanine transaminase AlaA |
* | * | ÷ | NZ_CP009273 | 2415735 | 2415796 | 62 | 2 [1] | [1] 3 | yfcH | TIGR01777 family oxidoreductase |
* | * | ÷ | NZ_CP009273 | 2430944 | 2430976 | 33 | 2 [1] | [1] 2 | pdxB | 4‑phosphoerythronate dehydrogenase PdxB |
* | * | ÷ | NZ_CP009273 | 2463656 | 2463724 | 69 | 2 [1] | [1] 2 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2463864 | 2463873 | 10 | 2 [1] | [0] 2 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2467162 | 2467184 | 23 | 2 [1] | [1] 2 | BW25113_RS12305 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2470968 | 2470985 | 18 | 2 [1] | [0] 2 | dsdC | DNA‑binding transcriptional regulator DsdC |
* | * | ÷ | NZ_CP009273 | 2474616 | 2474656 | 41 | 2 [1] | [0] 2 | emrY | multidrug efflux MFS transporter permease subunit EmrY |
* | * | ÷ | NZ_CP009273 | 2490293 | 2490305 | 13 | 4 [1] | [0] 4 | lpxP/ypdK | kdo(2)‑lipid IV(A) palmitoleoyltransferase/membrane protein YpdK |
* | * | ÷ | NZ_CP009273 | 2539288 | 2539298 | 11 | 2 [0] | [1] 2 | murQ | N‑acetylmuramic acid 6‑phosphate etherase |
* | * | ÷ | NZ_CP009273 | 2568203 | 2568233 | 31 | 2 [1] | [0] 2 | eutQ | ethanolamine utilization acetate kinase EutQ |
* | * | ÷ | NZ_CP009273 | 2579480 | 2579500 | 21 | 3 [1] | [1] 2 | narQ | nitrate/nitrite two‑component system sensor histidine kinase NarQ |
* | * | ÷ | NZ_CP009273 | 2616080 | 2616107 | 28 | 3 [1] | [1] 2 | purN | phosphoribosylglycinamide formyltransferase |
* | * | ÷ | NZ_CP009273 | 2629200 | 2629216 | 17 | 2 [1] | [1] 2 | yfgJ/der | zinc‑ribbon domain‑containing protein/ribosome biogenesis GTPase Der |
* | * | ÷ | NZ_CP009273 | 2696965 | 2696992 | 28 | 3 [1] | [1] 2 | rnc | ribonuclease III |
* | * | ÷ | NZ_CP009273 | 2700231 | 2700231 | 1 | 2 [0] | [0] 2 | lepA | translation elongation factor 4 |
* | * | ÷ | NZ_CP009273 | 2777035 | 2777050 | 16 | 2 [1] | [0] 2 | BW25113_RS25705 | DUF5507 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2777839 | 2777918 | 80 | 2 [1] | [1] 2 | BW25113_RS25705 | DUF5507 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2791947 | 2792062 | 116 | 2 [1] | [1] 2 | stpA/alaE | DNA‑binding protein StpA/L‑alanine exporter AlaE |
* | * | ÷ | NZ_CP009273 | 2795197 | 2795205 | 9 | 2 [1] | [0] 2 | nrdE | class 1b ribonucleoside‑diphosphate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 2827945 | 2827955 | 11 | 2 [0] | [1] 3 | norW | NADH:flavorubredoxin reductase NorW |
* | * | ÷ | NZ_CP009273 | 2975780 | 2975789 | 10 | 2 [1] | [1] 2 | araE/kduD | arabinose‑proton symporter AraE/2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase KduD |
* | * | ÷ | NZ_CP009273 | 2984510 | 2984625 | 116 | 2 [1] | [1] 2 | BW25113_RS14825/ygeG | hypothetical protein/tetratricopeptide repeat protein |
* | * | ÷ | NZ_CP009273 | 2985203 | 2985306 | 104 | 2 [0] | [1] 3 | ygeG/ygeH | tetratricopeptide repeat protein/HilA family transcriptional regulator YgeH |
* | * | ÷ | NZ_CP009273 | 2988592 | 2988671 | 80 | 2 [1] | [1] 2 | BW25113_RS14850/BW25113_RS26010 | response regulator transcription factor/hypothetical protein |
* | * | ÷ | NZ_CP009273 | 3044198 | 3044304 | 107 | 2 [1] | [1] 2 | gcvT/BW25113_RS25745 | glycine cleavage system aminomethyltransferase GcvT/protein YqfI |
* | * | ÷ | NZ_CP009273 | 3157632 | 3157685 | 54 | 2 [1] | [1] 2 | parC | DNA topoisomerase IV subunit A |
* | * | ÷ | NZ_CP009273 | 3183983 | 3183997 | 15 | 2 [0] | [1] 2 | [yqiH]–[yqiI] | [yqiH],[yqiI] |
* | * | ÷ | NZ_CP009273 | 3246069 | 3246132 | 64 | 4 [1] | [0] 2 | yhaH/yhaI | DUF805 domain‑containing protein/DUF805 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 3246178 | 3246189 | 12 | 2 [0] | [1] 2 | yhaH/yhaI | DUF805 domain‑containing protein/DUF805 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 3262331 | 3262410 | 80 | 2 [1] | [1] 2 | yhaC | YhaC family protein |
* | * | ÷ | NZ_CP009273 | 3354247 | 3354314 | 68 | 2 [1] | [1] 2 | gltD/gltF | glutamate synthase subunit GltD/DUF1120 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 3361998 | 3362030 | 33 | 2 [1] | [1] 2 | yhcG | PDDEXK nuclease domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 3378715 | 3378828 | 114 | 2 [1] | [1] 3 | argR/yhcN | transcriptional regulator ArgR/peroxide/acid stress response protein YhcN |
* | * | ÷ | NZ_CP009273 | 3492655 | 3492667 | 13 | 3 [1] | [0] 4 | cysG/yhfL | siroheme synthase CysG/YhfL family protein |
* | * | ÷ | NZ_CP009273 | 3647059 | 3647071 | 13 | 3 [1] | [1] 2 | BW25113_RS18165/slp | hypothetical protein/outer membrane lipoprotein Slp |
* | * | ÷ | NZ_CP009273 | 3797745 | 3797774 | 30 | 2 [1] | [0] 2 | rfaS | LPS core biosynthesis protein RfaS |
* | * | ÷ | NZ_CP009273 | 3996412 | 3996448 | 37 | 3 [0] | [1] 2 | BW25113_RS19825 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 4194427 | 4194441 | 15 | 3 [1] | [1] 2 | zraR | sigma‑54‑dependent response regulator transcription factor ZraR |
* | * | ÷ | NZ_CP009273 | 4466780 | 4466882 | 103 | 3 [1] | [1] 3 | BW25113_RS22080 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 4531522 | 4531557 | 36 | 2 [0] | [1] 2 | fimB/fimE | type 1 fimbria switch DNA invertase FimB/type 1 fimbria switch DNA invertase FimE |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | NA (NA) | 24 (1.950) | 16/168 | 0.1 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 20 (1.620) | 16/168 | 0.1 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
* | ? | NZ_CP009273 | 4532499 = | 2 (0.160) | 5 (0.450) | 5/150 | 0.6 | 56.2% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
? | NZ_CP009273 | 4532813 = | 6 (0.550) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
* | ? | NZ_CP009273 | = 4532507 | 2 (0.160) | 6 (0.550) | 5/150 | 0.6 | 60.7% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
? | NZ_CP009273 | = 4532803 | 6 (0.550) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |