mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 214 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 580,419 | 0 | C | G | 73.2% | 32.4 / 43.3 | 56 | I121M (ATC→ATG) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 4,603,776 | 1 | . | G | 72.6% | 180.4 / 78.4 | 84 | noncoding (80/87 nt) | leuP | tRNA‑Leu |
| * | NC_000913 | 1,949,436 | 0 | A | G | 71.9% | 552.9 / 306.7 | 405 | L6L (CTA→CTG) | yecE | hypothetical protein |
| * | NC_000913 | 1,634,023 | 0 | A | T | 71.0% | 17.0 / 22.4 | 31 | G123G (GGT→GGA) | nohA | NohA |
| * | NC_000913 | 2,460,900 | 1 | . | C | 66.7% | 209.2 / 117.1 | 99 | intergenic (+234/‑132) | fadL/b2345 | FadL/hypothetical protein |
| * | NC_000913 | 1,949,410 | 0 | C | T | 66.1% | 602.0 / inf | 451 | L196L (CTC→CTT) | yecD | hypothetical protein |
| * | NC_000913 | 1,949,411 | 0 | A | C | 66.1% | 813.2 / inf | 451 | N197H (AAC→CAC) | yecD | hypothetical protein |
| * | NC_000913 | 3,941,090 | 0 | T | C | 64.5% | 48.9 / 109.4 | 110 | noncoding (34/76 nt) | gltU | tRNA‑Val |
| * | NC_000913 | 580,783 | 0 | C | A | 63.7% | 264.5 / inf | 477 | I69I (ATC→ATA) | ybcX | hypothetical protein |
| * | NC_000913 | 580,509 | 0 | G | C | 63.6% | 41.0 / 75.4 | 66 | L151L (CTG→CTC) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 1,634,026 | 0 | T | G | 62.9% | 32.9 / 30.0 | 35 | A122A (GCA→GCC) | nohA | NohA |
| * | NC_000913 | 1,949,356 | 0 | T | C | 62.8% | 314.6 / inf | 411 | S178S (AGT→AGC) | yecD | hypothetical protein |
| * | NC_000913 | 580,777 | 0 | C | T | 62.5% | 504.5 / inf | 466 | D67D (GAC→GAT) | ybcX | hypothetical protein |
| * | NC_000913 | 1,949,344 | 0 | G | A | 62.4% | 372.7 / inf | 371 | Q174Q (CAG→CAA) | yecD | hypothetical protein |
| * | NC_000913 | 580,792 | 0 | G | C | 62.4% | 449.1 / inf | 444 | V72V (GTG→GTC) | ybcX | hypothetical protein |
| * | NC_000913 | 1,949,472 | 0 | G | T | 62.4% | 99.7 / inf | 234 | G18G (GGG→GGT) | yecE | hypothetical protein |
| * | NC_000913 | 580,771 | 0 | C | T | 62.3% | 451.5 / inf | 479 | G65G (GGC→GGT) | ybcX | hypothetical protein |
| * | NC_000913 | 580,773 | 0 | G | A | 62.2% | 492.4 / inf | 479 | S66N (AGC→AAC) | ybcX | hypothetical protein |
| * | NC_000913 | 580,795 | 0 | T | C | 62.1% | 285.2 / inf | 438 | N73N (AAT→AAC) | ybcX | hypothetical protein |
| * | NC_000913 | 580,801 | 0 | G | T | 62.1% | 201.7 / inf | 430 | V75V (GTG→GTT) | ybcX | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4008398 | 43 (0.240) | 36 (0.210) +AAGA |
17/172 | 8.7 | 46.4% | coding (481/516 nt) | b4555 | hypothetical protein |
| ? | NC_000913 | 4008399 = | 43 (0.240) | coding (482/516 nt) | b4555 | hypothetical protein | |||||
| * | ? | NC_000913 | = 3958257 | 41 (0.230) | 19 (0.110) +ACC |
17/178 | 9.0 | 32.4% | intergenic (‑826/‑35) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| ? | NC_000913 | 3958258 = | 41 (0.230) | intergenic (‑827/‑34) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase | |||||
| * | ? | NC_000913 | = 274373 | NA (NA) | 70 (0.390) | 11/184 | 11.1 | 24.1% | intergenic (‑32/‑176) | trs51/ykfD | IS5 transposase/putative amino acid/amine transport protein |
| ? | NC_000913 | 294583 = | 221 (1.220) | coding (221/441 nt) | yagN | hypothetical protein | |||||
| * | ? | NC_000913 | 273179 = | NA (NA) | 93 (0.510) | 9/184 | 11.9 | 29.2% | coding (1094/1131 nt) | ykfC | hypothetical protein |
| ? | NC_000913 | = 294586 | 225 (1.240) | coding (218/441 nt) | yagN | hypothetical protein | |||||
| * | ? | NC_000913 | 294583 = | 221 (1.220) | 6 (0.030) | 6/184 | 13.4 | 2.7% | coding (221/441 nt) | yagN | hypothetical protein |
| ? | NC_000913 | = 2065375 | 217 (1.200) | intergenic (‑32/‑1255) | trs56/b1995 | IS5 transposase/hypothetical protein | |||||
| * | ? | NC_000913 | 3088416 = | 207 (1.140) | 3 (0.020) | 3/174 | 14.8 | 1.6% | coding (51/708 nt) | endA | DNA‑specific endonuclease I |
| ? | NC_000913 | 3088433 = | 184 (1.070) | coding (68/708 nt) | endA | DNA‑specific endonuclease I | |||||
| * | ? | NC_000913 | 3790742 = | 311 (1.710) | 3 (0.020) | 3/176 | 14.9 | 1.0% | coding (584/873 nt) | htrL | HtrL |
| ? | NC_000913 | 3790760 = | 294 (1.700) | coding (566/873 nt) | htrL | HtrL | |||||