breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 293 A→G intergenic (+38/‑44) thrL → / → thrA thr operon leader peptide/aspartokinase I
RA 1,999 A→G T555A (ACT→GCT)  thrA → aspartokinase I
RA 8,533 C→T A99V (GCG→GTG)  talB → transaldolase B
RA 16,941 A→G V7A (GTG→GCG)  gef ← Gef
RA 27,903 T→C L204P (CTG→CCG)  yaaF → hypothetical protein
RA 32,257 A→G I481V (ATC→GTC)  carB → carbamoyl‑phosphate synthase large subunit
RA 37,332 A→G C165R (TGC→CGC)  caiC ← putative crotonobetain
RA 52,312 G→A A40V (GCG→GTG)  ksgA ← S‑adenosylmethionine‑6‑N',N'‑adenosyl (rRNA) dimethyltransferase
RA 52,554 A→G L288P (CTG→CCG)  pdxA ← PdxA
RA 52,760 A→G G219G (GGT→GGC pdxA ← PdxA
RA 54,157 C→T P182P (CCG→CCA surA ← survival protein
RA 55,791 A→G L440P (CTC→CCC)  imp ← organic solvent tolerance
RA 66,528 T→C Q8R (CAG→CGG)  araD ← L‑ribulose‑5‑phosphate 4‑epimerase
MC JC 66,533 3540 bp→27 bp [araD]araB [araD], araA, araB
RA 70,289 G→T intergenic (‑241/‑98) araB ← / → araC L‑ribulokinase/transcriptional regulator for ara operon
RA 70,940 A→G Y185C (TAC→TGC)  araC → transcriptional regulator for ara operon
RA 73,833 A→G I230T (ATC→ACC)  yabK ← putative transport system permease protein
RA 76,142 A→G R386R (CGT→CGC yabN ← putative transport protein
RA 78,003 A→C E128A (GAG→GCG)  yabM → putative transport protein
RA 79,855 A→G V337A (GTG→GCG)  leuC ← 3‑isopropylmalate isomerase (dehydratase) subunit
RA 80,603 (T)5→6 coding (262/1401 nt) leuC ← 3‑isopropylmalate isomerase (dehydratase) subunit
RA 85,694 T→C V22A (GTA→GCA)  ilvI → acetolactate synthase isozyme III large subunit
RA 89,802 G→A E57K (GAG→AAG)  yabB → hypothetical protein
RA 89,815 C→T S61L (TCG→TTG)  yabB → hypothetical protein
RA 92,447 A→G A345A (GCA→GCG ftsI → penicillin‑binding protein 3
RA 102,844 A→G Q204Q (CAA→CAG ddlB → D‑alanine‑D‑alanine ligase B
RA 112,238 A→G V121A (GTG→GCG)  yacF ← hypothetical protein
RA 115,788 A→G C438R (TGC→CGC)  hofB ← HofB
RA 115,968 +G coding (1132/1386 nt) hofB ← HofB
RA 122,235 T→C R48R (CGT→CGC pdhR → transcriptional regulator for pyruvate dehydrogenase complex
RA 126,160 A→G T156A (ACC→GCC)  aceF → pyruvate dehydrogenase
RA 134,838 A→G W249R (TGG→CGG)  speD ← S‑adenosylmethionine decarboxylase
RA 137,057 G→A intergenic (‑140/‑26) yacC ← / → yacK hypothetical protein/hypothetical protein
RA 158,711 C→T R128H (CGC→CAC)  pcnB ← poly(A) polymerase I
RA 160,649 A→G intergenic (‑45/+133) dksA ← / ← sfsA DksA/putative regulator for maltose metabolism
RA 177,386 C→T R80H (CGC→CAC)  yadS ← hypothetical protein
RA 178,128 A→G I112T (ATT→ACT)  yadT ← hypothetical protein
RA 186,043 T→C N870D (AAC→GAC)  glnD ← protein PII
RA 187,838 A→G R271R (CGT→CGC glnD ← protein PII
RA 194,316 A→G S266G (AGT→GGT)  yaeM → putative ATP‑binding component of a transport system
RA 195,014 A→G I38V (ATT→GTT)  yaeS → hypothetical protein
RA 196,710 C→T L55L (CTC→CTT yaeL → hypothetical protein
RA 198,418 A→G D164G (GAC→GGC)  yaeT → hypothetical protein
RA 199,879 A→G N651S (AAC→AGC)  yaeT → hypothetical protein
RA 200,585 A→G Q35R (CAG→CGG)  hlpA → histone‑like protein
RA 204,556 C→G P22A (CCG→GCG)  rnhB → RNAse HII
RA 206,483 A→G Y453C (TAC→TGC)  dnaE → DNA polymerase III alpha subunit
RA 229,560 A→G T132A (ACG→GCG)  yafB → putative aldose reductase
RA 229,683 A→G I173V (ATC→GTC)  yafB → putative aldose reductase
RA 230,556 A→G M109T (ATG→ACG)  yafC ← putative transcriptional regulator LYSR‑type
RA 232,218 A→G D98G (GAC→GGC)  yafE → putative biotin synthesis protein
RA 266,105 A→G intergenic (‑328/+303) yafY ← / ← yafZ hypothetical protein/hypothetical protein
RA 271,281 G→A G76G (GGG→GGA b0257 → putative transposase
RA 271,938 A→G intergenic (+459/‑148) b0257 → / → ykfC putative transposase/hypothetical protein
RA 277,917 A→G L41P (CTG→CCG)  afuC ← AfuC
RA 285,775 A→G Y386C (TAC→TGC)  yagG → putative permease
RA 294,990 T→C H444R (CAC→CGC)  intF ← putative phage integrase
RA 300,243 +G coding (869/957 nt) yagS ← hypothetical protein
RA 301,875 A→G intergenic (‑78/‑340) yagT ← / → yagU putative xanthine dehydrogenase/hypothetical protein
RA 302,564 A→G Y117C (TAT→TGT)  yagU → hypothetical protein
RA 307,684 T→C L291L (TTA→TTG yagX ← hypothetical protein
RA 308,649 A→G V201A (GTG→GCG)  yagY ← hypothetical protein
RA 308,935 G→A R106C (CGC→TGC)  yagY ← hypothetical protein
RA 318,413 G→A R280R (CGC→CGT ykgC ← putative oxidoreductase
RA 321,039 G→A D70N (GAC→AAC)  ykgE → putative dehydrogenase subunit
RA 328,027 T→C T184A (ACC→GCC)  betI ← putative transcriptional repressor of bet genes
RA 329,174 A→G Y163C (TAC→TGC)  betT → high‑affinity choline transport
RA 332,019 T→C V142A (GTG→GCG)  yahA → hypothetical protein
RA 332,530 T→C P312P (CCT→CCC yahA → hypothetical protein
RA 339,498 T→C V37A (GTG→GCG)  yahI → putative kinase
RA 339,531 T→C V48A (GTG→GCG)  yahI → putative kinase
RA 342,821 C→T F238F (TTC→TTT yahK → putative oxidoreductase
RA 347,902 G→A intergenic (‑235/‑4) prpR ← / → prpB regulator for prp operon/putative phosphonomutase 2
RA 361,946 A→G L153P (CTG→CCG)  lacY ← galactoside permease
RA 367,140 C→T A207T (GCC→ACC)  mhpR ← transcriptional regulator for mhp operon
RA 367,441 A→G D106D (GAT→GAC mhpR ← transcriptional regulator for mhp operon
RA 374,060 G→A E323E (GAG→GAA mhpE → 4‑hydroxy‑2‑ketovalerate aldolase
RA 379,246 (G)10→9 intergenic (‑120/+47) yaiN ← / ← yaiO putative alpha helix chain/hypothetical protein
RA 384,546 A→G T50A (ACC→GCC)  tauA → TauA
RA 405,539 A→G intergenic (+93/‑90) yaiI → / → aroL hypothetical protein/shikimate kinase II
RA 409,218 A→G V9A (GTT→GCT)  yaiD ← hypothetical protein
RA 411,562 T→C A76A (GCA→GCG araJ ← AraJ
RA 416,945 A→G T194A (ACG→GCG)  phoB → positive response regulator for pho regulon
RA 419,492 T→C R226R (CGT→CGC brnQ → branched chain amino acid transport system II carrier protein
RA 419,767 T→C V318A (GTG→GCG)  brnQ → branched chain amino acid transport system II carrier protein
RA 432,925 C→T P83S (CCG→TCG)  ribD → pyrimidine deaminase
RA 435,927 A→G T39A (ACG→GCG)  pgpA → phosphatidylglycerophosphatase
RA 436,659 T→C E258G (GAG→GGG)  yajO ← putative NAD(P)H‑dependent xylose reductase
RA 438,194 A→G V403A (GTG→GCG)  dxs ← 1‑deoxyxylulose‑5‑phosphate synthase
RA 439,695 A→G Y211H (TAT→CAT)  ispA ← geranyltranstransferase
RA 446,355 T→C N192S (AAC→AGC)  cyoE ← protoheme IX farnesyltransferase
RA 446,850 A→G L27P (CTG→CCG)  cyoE ← protoheme IX farnesyltransferase
RA 450,780 T→C T19A (ACT→GCT)  cyoA ← cytochrome o ubiquinol oxidase subunit II
RA 451,404 A→G F456L (TTC→CTC)  ampG ← AmpG
RA 459,323 T→C G404G (GGT→GGC lon → ATP‑dependent protease La
RA 459,477 T→C Y456H (TAC→CAC)  lon → ATP‑dependent protease La
RA 477,096 A→G L251P (CTC→CCC)  ylaB ← hypothetical protein
RA 477,192 A→G L219P (CTG→CCG)  ylaB ← hypothetical protein
RA 477,992 A→G intergenic (‑145/+13) ylaB ← / ← ylaC hypothetical protein/hypothetical protein
RA 480,099 A→G intergenic (‑167/+379) ybaJ ← / ← acrB hypothetical protein/acridine efflux pump
RA 481,041 A→G S863P (TCC→CCC)  acrB ← acridine efflux pump
RA 482,211 T→C T473A (ACC→GCC)  acrB ← acridine efflux pump
RA 488,917 A→G E1053G (GAG→GGG)  aefA → putative alpha helix protein
RA 493,536 C→T D79D (GAC→GAT ybaB → hypothetical protein
RA 495,182 T→C I280T (ATC→ACC)  htpG → chaperone Hsp90
RA 500,613 A→G E422G (GAG→GGG)  gsk → inosine‑guanosine kinase
RA 502,019 T→C Q148Q (CAA→CAG ybaL ← putative transport protein
RA 502,653 C→T intergenic (‑191/+47) ybaL ← / ← fsr putative transport protein/fosmidomycin resistance protein
RA 504,799 A→G Y221C (TAC→TGC)  ushA → UDP‑sugar hydrolase (5'‑nucleotidase)
RA 526,302 (G)6→7 coding (3818/4281 nt) rhsD → RhsD
RA 528,636 T→C intergenic (+282/+233) b0501 → / ← b0502 hypothetical protein/hypothetical protein
RA 531,453 T→C intergenic (‑8/‑222) ybbS ← / → ybbT putative transcriptional regulator LYSR‑type/hypothetical protein
RA 539,651 A→G L427L (TTA→TTG ybbX → putative hydrolase
RA 541,786 +G coding (675/1146 nt) ybbZ → hypothetical protein
RA 547,694 A→G E38E (GAA→GAG b4507 → hypothetical protein
RA 547,835 +G coding (255/261 nt) b4507 → hypothetical protein
RA 556,959 T→C A2A (GCA→GCG folD ← 5,10‑methylene‑tetrahydrofolate dehydrogenase
RA 564,469 G→A R245C (CGC→TGC)  intD ← prophage DLP12 integrase
RA 568,823 A→G G233G (GGA→GGG ybcK → hypothetical protein
RA 573,627 T→C intergenic (+65/‑77) ybcQ → / → b4509 hypothetical protein/hypothetical protein
RA 578,967 T→C intergenic (‑108/‑136) ybcV ← / → ybcW putative envelope protein/hypothetical protein
RA 580,422 A→C A122A (GCA→GCC nohB → bacteriophage DNA packaging protein
RA 591,166 A→G G412G (GGT→GGC nfrB ← NfrB
RA 592,232 C→T R57Q (CGA→CAA)  nfrB ← NfrB
RA 595,469 A→G Q216R (CAG→CGG)  ylcB → putative resistance protein
RA 613,409 A→G A10A (GCA→GCG entF → ATP‑dependent serine activating enzyme
RA 628,816 A→G V98V (GTA→GTG ybdB → hypothetical protein
RA 629,933 T→C W273R (TGG→CGG)  cstA → carbon starvation protein
RA 631,241 A→G intergenic (+19/‑164) cstA → / → ybdD carbon starvation protein/hypothetical protein
RA 641,051 T→C M14V (ATG→GTG)  ybdQ ← hypothetical protein
RA 645,034 A→G V257A (GTG→GCG)  ybdS ← YbdS
RA 647,331 G→A D488D (GAC→GAT citF ← citrate lyase alpha chain
RA 651,666 T→C V70A (GTC→GCC)  citA → putative sensor‑type protein
RA 652,748 A→G T431A (ACC→GCC)  citA → putative sensor‑type protein
RA 653,656 G→A R191H (CGC→CAC)  citB → CitB
RA 654,812 G→A A127V (GCC→GTC)  dcuC ← DcuC
RA 656,969 A→G W65R (TGG→CGG)  crcB ← hypothetical protein
RA 657,246 A→G intergenic (‑85/‑8) crcB ← / → ybeH hypothetical protein/hypothetical protein
RA 667,973 C→T R96H (CGC→CAC)  ybeB ← hypothetical protein
RA 671,943 T→C A688A (GCA→GCG leuS ← leucine tRNA synthetase
RA 672,914 C→T G365S (GGC→AGC)  leuS ← leucine tRNA synthetase
RA 673,104 T→C K301K (AAA→AAG leuS ← leucine tRNA synthetase
RA 675,063 A→G A236A (GCT→GCC ybeQ ← hypothetical protein
RA 689,228 T→C S293G (AGC→GGC)  lnt ← apolipoprotein N‑acyltransferase
RA 700,788 A→G G10G (GGT→GGC nagC ← NagC
RA 701,551 T→C T142A (ACC→GCC)  nagA ← N‑acetylglucosamine‑6‑phosphate deacetylase
RA 704,236 T→C L357S (TTG→TCG)  nagE → PTS system, N‑acetylglucosamine‑specific enzyme IIABC
RA 707,634 A→G A26A (GCA→GCG ybfM → hypothetical protein
RA 709,880 T→C intergenic (‑11/+278) fur ← / ← fldA Fur/flavodoxin 1
RA 717,670 T→C I672V (ATC→GTC)  speF ← ornithine decarboxylase isozyme
RA 722,751 (T)8→7 coding (887/2685 nt) kdpD ← KdpD
RA 723,954 G→A G83G (GGC→GGT kdpC ← KdpC
RA 735,021 C→T A50V (GCC→GTC)  ybfC → hypothetical protein
RA 744,690 T→C R101R (CGT→CGC ybgL → putative lactam utilization protein
RA 747,952 A→G V85A (GTA→GCA)  ybgO ← hypothetical protein
RA 752,007 T→C G4G (GGA→GGG ybgD ← putative fimbrial‑like protein
RA 758,405 C→T A159A (GCC→GCT sucA → 2‑oxoglutarate dehydrogenase
RA 763,150 T→C I305T (ATC→ACC)  sucC → succinyl‑CoA synthetase beta subunit
RA 763,246 C→T A337V (GCA→GTA)  sucC → succinyl‑CoA synthetase beta subunit
RA 766,372 C→T A389V (GCG→GTG)  hrsA → PTS system fructose specific IIABC component
RA 772,731 A→G Y156C (TAC→TGC)  cydB → cytochrome d terminal oxidase polypeptide subunit II
RA 775,372 G→A A101T (GCC→ACC)  tolR → TolF
RA 780,533 A→G intergenic (+88/‑59) lysY → / → lysZ tRNA‑Lys/tRNA‑Lys
RA 780,918 T→C intergenic (+43/‑390) lysQ → / → nadA tRNA‑Lys/quinolinate synthetase A protein
RA 800,958 A→G Q326R (CAG→CGG)  ybhH → hypothetical protein
RA 804,639 C→T G646G (GGC→GGT ybhJ → hypothetical protein
RA 810,837 T→C A31A (GCT→GCC bioC → BioC
RA 814,470 A→G K574K (AAA→AAG uvrB → DNA repair; excision nuclease subunit B
RA 817,654 +G coding (377/513 nt) moaB → molybdopterin biosynthesis protein B
RA 823,777 (A)5→6 intergenic (‑57/‑76) ybhP ← / → ybhQ hypothetical protein/hypothetical protein
RA 827,018 C→T S396N (AGT→AAT)  ybhF ← YbhF
RA 832,142 A→G V11A (GTC→GCC)  ybiA ← hypothetical protein
RA 839,124 T→C N544S (AAC→AGC)  b0805 ← putative outer membrane receptor for iron transport
RA 857,539 T→C D249G (GAC→GGC)  ybiU ← hypothetical protein
RA 862,272 T→C T164A (ACT→GCT)  ybiY ← putative pyruvate formate‑lyase activating enzyme 2
RA 865,377 C→T G71R (GGG→AGG)  moeA ← MoeA
RA 866,644 A→G N285S (AAT→AGT)  ybiK → putative asparaginase
RA 867,645 (C)8→7 coding (870/1839 nt) b0829 → hypothetical protein
RA 873,303 C→T L368F (CTC→TTC)  b0833 → hypothetical protein
RA 888,315 C→T G243D (GGC→GAC)  b0847 ← putative transport protein
RA 888,802 (A)7→6 coding (241/1686 nt) b0847 ← putative transport protein
RA 891,504 A→G Q105Q (CAA→CAG rimK → ribosomal protein S6 modification protein
RA 903,232 Δ1 bp coding (459/516 nt) ybjP ← hypothetical protein
RA 903,254 A→G V146A (GTC→GCC)  ybjP ← hypothetical protein
RA 905,051 T→C E321G (GAG→GGG)  b0868 ← putative nucleotide di‑P‑sugar epimerase or dehydratase
RA 908,737 T→C Q512Q (CAA→CAG poxB ← pyruvate oxidase
RA 922,398 T→C V88A (GTG→GCG)  yljA → hypothetical protein
RA 932,454 A→G Q3R (CAG→CGG)  ftsK → cell division protein
RA 934,839 T→C V798A (GTT→GCT)  ftsK → cell division protein
RA 937,294 A→G A26A (GCA→GCG ycaJ → putative polynucleotide enzyme
RA 950,532 T→C Q749R (CAG→CGG)  pflB ← formate acetyltransferase 1
RA 961,334 C→T D39D (GAC→GAT rpsA → 30S ribosomal subunit protein S1
RA 963,286 A→G H79R (CAC→CGC)  himD → integration host factor beta subunit
RA 968,384 T→C S266P (TCT→CCT)  ycaH → hypothetical protein
RA 969,798 T→C L396P (CTC→CCC)  ycaQ → hypothetical protein
RA 974,364 A→G I275V (ATT→GTT)  mukF → MukF
RA 979,388 T→C R1280R (CGT→CGC mukB → MukB
RA 985,663 A→G G181G (GGT→GGC ompF ← outer membrane protein 1a
RA 987,323 C→T A296T (GCC→ACC)  asnS ← asparagine tRNA synthetase
RA 988,555 A→G L342P (CTG→CCG)  pncB ← nicotinate phosphoribosyltransferase
RA 991,040 A→G N399S (AAC→AGC)  pepN → aminopeptidase N
RA 996,684 A→G S18P (TCC→CCC)  ycbP ← hypothetical protein
RA 998,433 A→G intergenic (+19/‑6) ycbR → / → ycbS putative chaperone/putative outer membrane protein
RA 999,571 A→G Q378R (CAG→CGG)  ycbS → putative outer membrane protein
RA 1,003,385 Δ1 bp coding (186/681 nt) ycbF → putative chaperone
RA 1,003,911 (T)8→7 intergenic (+31/‑80) ycbF → / → pyrD putative chaperone/dihydro‑orotate dehydrogenase
RA 1,009,201 T→C S5S (AGT→AGC uup → putative ATP‑binding component of a transport system
RA 1,017,437 T→C D29G (GAC→GGC)  b0955 ← putative ATP‑dependent protease
RA 1,019,162 A→G Y39H (TAC→CAC)  ompA ← outer membrane protein 3a
RA 1,021,376 A→G D580D (GAT→GAC b0960 ← hypothetical protein
RA 1,029,120 +C coding (73/1191 nt) b0967 ← putative oxidoreductase
RA 1,035,719 C→T T48M (ACG→ATG)  hyaE → HyaE
RA 1,040,218 G→A A127T (GCA→ACA)  appA → phosphoanhydride phosphorylase
RA 1,048,676 A→G S104P (TCC→CCC)  ymcD ← hypothetical protein
RA 1,050,477 A→G intergenic (‑79/‑207) cspH ← / → cspG cold shock‑like protein/CspG
RA 1,053,401 T→C A657A (GCA→GCG torS ← TorS
RA 1,053,515 T→C G619G (GGA→GGG torS ← TorS
RA 1,056,041 A→G E186E (GAA→GAG torT → TorT
RA 1,056,882 T→C Y99C (TAC→TGC)  torR ← TorR
RA 1,057,390 C→T G28G (GGC→GGT torC → trimethylamine N‑oxide reductase, cytochrome c‑type subunit
RA 1,059,505 T→C W343R (TGG→CGG)  torA → trimethylamine N‑oxide reductase subunit
RA 1,060,946 A→G E823G (GAG→GGG)  torA → trimethylamine N‑oxide reductase subunit
RA 1,061,601 T→C C194R (TGC→CGC)  torD → TorD
RA 1,067,441 (A)6→5 coding (138/174 nt) b4516 → hypothetical protein
RA 1,071,190 T→C T65A (ACG→GCG)  b1010 ← hypothetical protein
RA 1,086,713 A→G R119R (CGT→CGC ycdQ ← hypothetical protein
RA 1,088,752 A→G V110A (GTG→GCG)  ycdR ← hypothetical protein
RA 1,091,304 T→C D70G (GAC→GGC)  ycdS ← putative outer membrane protein
RA 1,096,622 (G)7→8 intergenic (+570/+166) ycdU → / ← serX hypothetical protein/tRNA‑Ser
RA 1,096,810 A→G noncoding (66/88 nt) serX ← tRNA‑Ser
RA 1,098,623 T→C R174R (CGT→CGC ycdX → hypothetical protein
RA 1,099,277 T→C Y139H (TAT→CAT)  ycdY → putative oxidoreductase component
RA 1,102,451 A→G intergenic (‑32/+435) csgD ← / ← b4518 CsgD/hypothetical protein
RA 1,107,299 A→G V289A (GTG→GCG)  ymdD ← hypothetical protein
RA 1,116,479 A→G A150A (GCA→GCG yceA → hypothetical protein
RA 1,117,607 A→G G31G (GGT→GGC yceI ← hypothetical protein
RA 1,125,352 T→C W190R (TGG→CGG)  rimJ → acetylation of N‑terminal alanine of 30S ribosomal subunit protein S5
RA 1,127,778 C→T G239G (GGC→GGT mviN → putative virulence factor
RA 1,132,875 T→C L360P (CTG→CCG)  flgE → hook protein
RA 1,136,396 A→G G301G (GGA→GGG flgI → FlgI
RA 1,138,203 A→G Q201Q (CAA→CAG flgK → hook‑filament junction protein 1
RA 1,143,435 A→G S52S (AGT→AGC rne ← RNase E
RA 1,144,672 A→G K170K (AAA→AAG yceC → hypothetical protein
RA 1,145,923 T→C intergenic (‑66/‑94) yceF ← / → yceD hypothetical protein/hypothetical protein
RA 1,147,973 T→C intergenic (+59/‑9) plsX → / → fabH PlsX/3‑oxoacyl‑[acyl‑carrier‑protein] synthase III
RA 1,150,932 A→G D32G (GAC→GGC)  acpP → acyl carrier protein
RA 1,167,731 T→C T109A (ACC→GCC)  ycfQ ← hypothetical protein
RA 1,168,777 A→G L274P (CTG→CCG)  ycfS ← hypothetical protein
RA 1,170,138 A→G I1017T (ATC→ACC)  mfd ← transcription‑repair coupling mutation frequency decline
RA 1,173,983 C→T G136R (GGG→AGG)  ycfT ← hypothetical protein
RA 1,174,548 (G)5→6 intergenic (‑160/‑102) ycfT ← / → ycfU hypothetical protein/hypothetical protein
RA 1,175,527 A→G K293R (AAG→AGG)  ycfU → hypothetical protein
RA 1,184,484 A→G F112L (TTT→CTT)  potA ← ATP‑binding component of spermidine/putrescine transport
RA 1,185,646 A→G T194A (ACT→GCT)  pepT → putative peptidase T
RA 1,186,123 C→T R353C (CGC→TGC)  pepT → putative peptidase T
RA 1,202,768 A→G D97G (GAT→GGT)  ymfL → hypothetical protein
RA 1,209,664 (G)5→6 coding (96/834 nt) mcrA → McrA
RA 1,216,420 A→G intergenic (+201/‑89) ymgC → / → b1168 hypothetical protein/putative proteases
RA 1,220,610 A→G E61G (GAG→GGG)  b1170 → putative part of putative ATP‑binding component of a transport system
RA 1,222,734 T→C intergenic (‑583/‑184) b1172 ← / → b1173 hypothetical protein/hypothetical protein
RA 1,226,344 C→T A118T (GCC→ACC)  ycgK ← hypothetical protein
RA 1,230,143 T→C Y52H (TAC→CAC)  umuD → UmuD
RA 1,230,972 A→G G188G (GGA→GGG umuC → UmuC
RA 1,233,892 A→G S17P (TCC→CCC)  nhaB ← Na+/H+ antiporter, pH independent
RA 1,237,781 A→G T330A (ACG→GCG)  dadA → D‑amino acid dehydrogenase subunit
RA 1,237,963 C→T S390S (TCC→TCT dadA → D‑amino acid dehydrogenase subunit
RA 1,243,418 T→C V111V (GTA→GTG ycgR ← hypothetical protein
RA 1,249,670 A→G V131A (GTC→GCC)  b1200 ← putative dihydroxyacetone kinase
RA 1,261,945 A→G R52R (CGT→CGC ychB ← hypothetical protein
RA 1,263,021 G→A D29N (GAT→AAT)  hemA → HemA
RA 1,273,390 T→C R81R (CGT→CGC ychP → putative factor
RA 1,279,780 T→C W232R (TGG→CGG)  narG → nitrate reductase 1 alpha subunit
RA 1,280,531 A→G Y482C (TAC→TGC)  narG → nitrate reductase 1 alpha subunit
RA 1,289,543 T→C F27L (TTT→CTT)  hnr → Hnr
RA 1,291,867 A→G R93R (CGT→CGC hns ← DNA‑binding protein HLP‑II
RA 1,293,354 A→G H202R (CAT→CGT)  tdk → thymidine kinase
RA 1,293,679 A→G P187P (CCT→CCC ychG ← hypothetical protein
RA 1,301,617 T→C V232A (GTG→GCG)  oppB → oligopeptide transport permease protein
RA 1,302,782 A→G N2S (AAC→AGC)  oppD → OppD
RA 1,303,961 A→G E58E (GAA→GAG oppF → OppF
RA 1,310,470 A→G F149L (TTT→CTT)  yciB ← hypothetical protein
RA 1,316,595 (C)6→5 coding (1218/1362 nt) trpC ← N‑(5‑phosphoribosyl)anthranilate isomerase and indole‑3‑glycerolphosphate synthetase
RA 1,330,421 A→G L450L (TTA→TTG topA → DNA topoisomerase type I omega protein
RA 1,335,418 A→G S522G (AGC→GGC)  acnA → aconitate hydrase 1
RA 1,338,553 A→G H96R (CAC→CGC)  yciS → hypothetical protein
RA 1,339,624 A→G K348R (AAG→AGG)  yciM → putative heat shock protein
RA 1,340,692 C→T S5F (TCC→TTC)  yciH → hypothetical protein
RA 1,343,823 C→T G315E (GGG→GAG)  yciR ← hypothetical protein
RA 1,343,880 A→G V296A (GTG→GCG)  yciR ← hypothetical protein
RA 1,347,664 A→G T182T (ACT→ACC yciW ← putative oxidoreductase
RA 1,349,337 G→A intergenic (‑274/+94) fabI ← / ← ycjD enoyl‑[acyl‑carrier‑protein] reductase (NADH)/hypothetical protein
RA 1,351,962 C→T R194H (CGT→CAT)  sapC ← SapC
RA 1,356,924 C→T P96P (CCG→CCA ycjJ ← putative amino acid/amine transport protein
RA 1,358,926 T→C T3A (ACC→GCC)  b1297 ← putative glutamine synthetase
RA 1,359,603 G→A A150T (GCA→ACA)  ycjL → putative amidotransferase subunit
RA 1,360,184 G→A D84N (GAC→AAC)  ycjC → hypothetical protein
RA 1,372,616 T→C I168T (ATC→ACC)  ycjP → putative transport system permease protein
RA 1,376,771 C→T G288G (GGC→GGT ycjT → hypothetical protein
RA 1,384,449 G→A T305T (ACG→ACA ycjF → hypothetical protein
RA 1,385,769 T→C N342N (AAT→AAC tyrR → TyrR
RA 1,389,803 A→G P29P (CCT→CCC b1327 ← hypothetical protein
RA 1,400,388 A→G S298P (TCC→CCC)  b1337 ← hypothetical protein
RA 1,405,126 T→C M252V (ATG→GTG)  b1341 ← hypothetical protein
RA 1,419,658 C→T P172P (CCC→CCT ydaU → hypothetical protein
RA 1,433,368 T→C E92E (GAA→GAG ynaF ← putative filament protein
RA 1,439,984 T→C H295R (CAC→CGC)  ldhA ← fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,445,885 A→G I115V (ATT→GTT)  feaB → phenylacetaldehyde dehydrogenase
RA 1,449,800 T→C T623A (ACC→GCC)  maoC ← putative aldehyde dehydrogenase
RA 1,456,531 A→G M82V (ATG→GTG)  b1394 → hypothetical protein
RA 1,458,752 T→C R86R (CGT→CGC b1396 → hypothetical protein
RA 1,461,082 C→T P312S (CCA→TCA)  b1398 → hypothetical protein
RA 1,461,874 T→C P104P (CCT→CCC b1399 → hypothetical protein
RA 1,462,362 T→C I267T (ATT→ACT)  b1399 → hypothetical protein
RA 1,464,084 T→C intergenic (+999/+1861) b1400 → / ← yi222 putative transferase/hypothetical protein
RA 1,472,339 (C)6→7 coding (95/861 nt) ydbC → putative dehydrogenase
RA 1,472,351 A→G H36R (CAC→CGC)  ydbC → putative dehydrogenase
RA 1,473,746 A→G K195K (AAA→AAG ydbD → hypothetical protein
RA 1,476,839 T→C V197A (GTC→GCC)  b1409 → putative phosphatidate cytidiltransferase
RA 1,478,094 A→G G311G (GGA→GGG b1410 → hypothetical protein
RA 1,479,250 T→C R106R (CGT→CGC ynbD → hypothetical protein
RA 1,479,655 T→C C241C (TGT→TGC ynbD → hypothetical protein
RA 1,480,081 T→C S383S (AGT→AGC ynbD → hypothetical protein
RA 1,481,285 A→G A67A (GCA→GCG hrpA → helicase, ATP‑dependent
RA 1,481,375 C→T I97I (ATC→ATT hrpA → helicase, ATP‑dependent
RA 1,482,154 T→C V357A (GTA→GCA)  hrpA → helicase, ATP‑dependent
RA 1,484,846 A→G A1254A (GCA→GCG hrpA → helicase, ATP‑dependent
RA 1,490,230 T→C intergenic (‑77/‑264) b1420 ← / → trg hypothetical protein/methyl‑accepting chemotaxis protein III
RA 1,490,510 C→T S6L (TCA→TTA)  trg → methyl‑accepting chemotaxis protein III
RA 1,493,567 T→C F86L (TTT→CTT)  b1423 → hypothetical protein
RA 1,497,599 T→C H292R (CAC→CGC)  b1428 ← hypothetical protein
RA 1,498,686 C→T A30A (GCC→GCT tehA → TehA
RA 1,507,420 T→C T18A (ACG→GCG)  b1437 ← hypothetical protein
RA 1,507,951 A→G intergenic (+3/‑76) b1438 → / → b1439 hypothetical protein/hypothetical protein
RA 1,510,339 T→C V221A (GTG→GCG)  b1440 → putative transport protein
RA 1,529,947 C→T A36A (GCC→GCT ydcC → putative receptor
RA 1,531,361 T→C H188R (CAT→CGT)  b1462 ← hypothetical protein
RA 1,532,150 A→G T35A (ACC→GCC)  b1463 → putative N‑hydroxyarylamine O‑acetyltransferase
RA 1,533,355 G→A A176A (GCC→GCT yddE ← hypothetical protein
RA 1,533,519 T→C T122A (ACG→GCG)  yddE ← hypothetical protein
RA 1,535,627 A→G R417R (CGT→CGC narY ← cryptic nitrate reductase 2 beta subunit
RA 1,549,144 T→C G220G (GGT→GGC fdnH → formate dehydrogenase‑N, nitrate‑inducible, iron‑sulfur beta subunit
RA 1,549,298 T→C L272L (TTG→CTG)  fdnH → formate dehydrogenase‑N, nitrate‑inducible, iron‑sulfur beta subunit
RA 1,561,521 C→T S754N (AGC→AAC)  b1489 ← hypothetical protein
RA 1,562,886 A→G V299A (GTT→GCT)  b1489 ← hypothetical protein
RA 1,566,541 T→C I103V (ATA→GTA)  b1491 ← hypothetical protein
RA 1,567,922 A→G F198L (TTC→CTC)  xasA ← acid sensitivity protein
RA 1,568,848 C→T A408T (GCC→ACC)  gadB ← glutamate decarboxylase isozyme
RA 1,570,594 G→A A878V (GCG→GTG)  pqqL ← putative peptidase
RA 1,572,526 T→C D234G (GAC→GGC)  pqqL ← putative peptidase
RA 1,572,698 G→A R177C (CGC→TGC)  pqqL ← putative peptidase
RA 1,587,161 T→C I289V (ATT→GTT)  b1505 ← putative outer membrane protein
RA 1,587,936 A→G R30R (CGT→CGC b1505 ← putative outer membrane protein
RA 1,594,520 A→G S531P (TCC→CCC)  ydeK ← hypothetical protein
RA 1,594,566 A→G G515G (GGT→GGC ydeK ← hypothetical protein
RA 1,594,797 (C)6→7 coding (1314/3978 nt) ydeK ← hypothetical protein
RA 1,596,699 T→C Q498R (CAG→CGG)  ydeV ← putative kinase
RA 1,596,967 A→G L409L (TTA→CTA)  ydeV ← putative kinase
RA 1,598,927 T→C L113L (TTA→TTG ydeW ← putative transcriptional regulator, sorC family
RA 1,599,102 T→C H55R (CAT→CGT)  ydeW ← putative transcriptional regulator, sorC family
RA 1,599,943 G→A A144T (GCC→ACC)  b1513 → putative ATP‑binding component of a transport system
RA 1,607,710 A→G L332P (CTT→CCT)  uxaB ← altronate oxidoreductase
RA 1,612,018 C→T G245D (GGT→GAT)  b1525 ← putative aldehyde dehydrogenase
RA 1,612,901 T→C V25A (GTG→GCG)  yneJ → putative transcriptional regulator LYSR‑type
RA 1,616,549 A→G S128S (AGT→AGC ydeB ← hypothetical protein
RA 1,616,587 T→C S116G (AGT→GGT)  ydeB ← hypothetical protein
RA 1,616,692 C→T G81S (GGC→AGC)  ydeB ← hypothetical protein
RA 1,617,966 T→C N125N (AAT→AAC marA → MarA
RA 1,619,900 T→C V182A (GTA→GCA)  ydeF → putative transport protein
RA 1,620,798 Δ1 bp intergenic (+255/+186) ydeF → / ← ydeH putative transport protein/hypothetical protein
RA 1,632,141 T→C S166P (TCA→CCA)  b1545 → hypothetical protein
RA 1,633,590 A→G G94G (GGT→GGC b1547 ← hypothetical protein
RA 1,642,279 A→G V30A (GTC→GCC)  b1560 ← hypothetical protein
RA 1,650,355 T→C F274L (TTC→CTC)  b1579 → putative transposase
RA 1,652,626 T→C E180E (GAA→GAG rspA ← starvation sensing protein
RA 1,655,245 T→C L91L (TTA→TTG ynfC ← hypothetical protein
RA 1,656,923 T→C P277P (CCT→CCC b1587 → putative oxidoreductase major subunit
RA 1,662,601 T→C A27A (GCT→GCC b1591 → putative oxidoreductase component
RA 1,662,715 A→G T65T (ACA→ACG b1591 → putative oxidoreductase component
RA 1,664,091 T→C S271S (AGT→AGC b1592 → putative chloride channel
RA 1,672,562 T→C L209P (CTG→CCG)  b1601 → putative transport protein
RA 1,676,843 T→C R131R (CGT→CGC b1604 → hypothetical protein
RA 1,677,885 A→G Y102C (TAT→TGT)  b1605 → putative arginine/ornithine antiporter
RA 1,680,393 T→C W74R (TGG→CGG)  rstA → response transcriptional regulatory protein
RA 1,680,496 (C)5→4 coding (323/729 nt) rstA → response transcriptional regulatory protein
RA 1,684,672 A→G intergenic (‑60/+83) fumC ← / ← fumA fumarase C/fumarase A
RA 1,689,391 G→A intergenic (+7/+219) ydgA → / ← uidC hypothetical protein/membrane‑associated protein
RA 1,689,553 A→G intergenic (+169/+57) ydgA → / ← uidC hypothetical protein/membrane‑associated protein
RA 1,690,777 T→C L29L (CTA→CTG uidC ← membrane‑associated protein
RA 1,693,549 A→G W183R (TGG→CGG)  uidA ← beta‑D‑glucuronidase
RA 1,695,310 T→C Q252R (CAG→CGG)  hdhA ← NAD‑dependent 7alpha‑hydroxysteroid dehydrogenase
RA 1,698,072 C→T R232C (CGT→TGT)  malX → MalX
RA 1,698,875 A→G V499V (GTA→GTG malX → MalX
RA 1,701,951 T→C S128G (AGC→GGC)  b1624 ← hypothetical protein
RA 1,702,726 T→C intergenic (‑394/‑247) b1624 ← / → b1625 hypothetical protein/hypothetical protein
RA 1,705,521 C→T V193V (GTC→GTT b1629 → putative membrane protein
RA 1,712,211 A→G V473V (GTA→GTG ydgR → putative transport protein
RA 1,712,350 (T)9→8 intergenic (+55/‑51) ydgR → / → gst putative transport protein/glutathionine S‑transferase
RA 1,713,565 G→A H117Y (CAT→TAT)  pdxY ← pyridoxal kinase 2
RA 1,713,746 C→T P56P (CCG→CCA pdxY ← pyridoxal kinase 2
RA 1,714,480 A→G F256S (TTC→TCC)  tyrS ← tyrosine tRNA synthetase
RA 1,716,150 A→G T88T (ACT→ACC ydhA ← hypothetical protein
RA 1,718,074 T→C S59P (TCC→CCC)  slyB → putative outer membrane protein
RA 1,718,191 A→G T98A (ACT→GCT)  slyB → putative outer membrane protein
RA 1,721,938 A→G V598V (GTA→GTG b1645 → hypothetical protein
RA 1,722,918 T→A N247Y (AAC→TAC)  b1647 ← hypothetical protein
RA 1,723,269 G→A P130S (CCA→TCA)  b1647 ← hypothetical protein
RA 1,725,518 (G)6→5 coding (836/1098 nt) nemA → N‑ethylmaleimide reductase
RA 1,727,504 A→G T132A (ACT→GCT)  lhr → Lhr
RA 1,729,644 T→C M845T (ATG→ACG)  lhr → Lhr
RA 1,731,175 T→C R1355R (CGT→CGC lhr → Lhr
RA 1,736,520 A→G Q218R (CAG→CGG)  purR → PurR
RA 1,738,433 T→C F167L (TTT→CTT)  ydhC → putative transport protein
RA 1,739,051 A→G M373V (ATG→GTG)  ydhC → putative transport protein
RA 1,741,574 2 bp→GA coding (94‑95/1374 nt) ydhE → putative transport protein
RA 1,748,779 (A)6→7 coding (310/720 nt) b1671 ← putative oxidoreductase Fe‑S subunit
RA 1,749,776 T→C A693A (GCA→GCG b1673 ← hypothetical protein
RA 1,750,491 T→C Y455C (TAC→TGC)  b1673 ← hypothetical protein
RA 1,751,328 A→G M176T (ATG→ACG)  b1673 ← hypothetical protein
RA 1,751,393 G→A T154T (ACC→ACT b1673 ← hypothetical protein
RA 1,753,749 A→G I10V (ATC→GTC)  pykF → pyruvate kinase I
RA 1,756,526 A→G V75A (GTG→GCG)  ynhG ← hypothetical protein
RA 1,757,874 T→C H225R (CAT→CGT)  b1680 ← hypothetical protein
RA 1,758,261 T→C E96G (GAA→GGA)  b1680 ← hypothetical protein
RA 1,759,194 C→T A208T (GCA→ACA)  ynhC ← hypothetical protein
RA 1,762,307 T→C Q35R (CAG→CGG)  ydiC ← hypothetical protein
RA 1,765,691 A→G V340A (GTG→GCG)  ydiJ ← putative oxidase
RA 1,768,647 T→C A12A (GCT→GCC b1689 → hypothetical protein
RA 1,776,008 T→C Y264Y (TAT→TAC b1695 → putative oxidoreductase
RA 1,776,191 T→C R325R (CGT→CGC b1695 → putative oxidoreductase
RA 1,778,478 T→C A18A (GCT→GCC ydiR → putative flavoprotein
RA 1,779,462 T→C V15A (GTT→GCT)  ydiS → YdiS
RA 1,787,068 G→A A204T (GCC→ACC)  aroH → 3‑deoxy‑D‑arabinoheptulosonate‑7‑phosphate synthase
RA 1,787,410 A→G T318A (ACT→GCT)  aroH → 3‑deoxy‑D‑arabinoheptulosonate‑7‑phosphate synthase
RA 1,788,045 A→G S408S (AGT→AGC b1706 ← hypothetical protein
RA 1,789,986 T→C D20G (GAC→GGC)  b1707 ← hypothetical protein
RA 1,791,298 T→C T95T (ACA→ACG btuD ← ATP‑binding component of vitamin B12 transport system
RA 1,791,400 T→C Q61Q (CAA→CAG btuD ← ATP‑binding component of vitamin B12 transport system
RA 1,793,668 A→G R767R (CGT→CGC pheT ← phenylalanine tRNA synthetase beta‑subunit
RA 1,799,569 G→A N342N (AAC→AAT thrS ← threonine tRNA synthetase
RA 1,808,078 A→G intergenic (+6/‑157) yniC → / → b1728 putative phosphatase/hypothetical protein
RA 1,812,482 T→C F198L (TTC→CTC)  katE → catalase
RA 1,826,476 T→C N428S (AAC→AGC)  b1746 ← putative aldehyde dehydrogenase
RA 1,827,618 A→G R47R (CGT→CGC b1746 ← putative aldehyde dehydrogenase
RA 1,830,747 T→C L99P (CTG→CCG)  xthA → exonuclease III
RA 1,837,903 A→G K138R (AAA→AGA)  b1757 → putative thiosulfate sulfur transferase
RA 1,839,484 A→G intergenic (‑51/‑30) b1758 ← / → b1759 putative cytochrome oxidase/hypothetical protein
RA 1,839,782 A→G H90R (CAC→CGC)  b1759 → hypothetical protein
RA 1,841,661 A→G T423A (ACC→GCC)  gdhA → NADP‑specific glutamate dehydrogenase
RA 1,845,852 T→C T61A (ACC→GCC)  selD ← selenophosphate synthase
RA 1,847,298 A→G K146K (AAA→AAG sppA → protease IV
RA 1,854,076 T→C S293G (AGC→GGC)  b1772 ← putative kinase
RA 1,858,325 A→G D344D (GAT→GAC b1776 ← putative oxidoreductase
RA 1,860,370 T→C E28E (GAA→GAG yeaA ← hypothetical protein
RA 1,863,065 G→A A199V (GCC→GTC)  b1781 ← putative aldehyde reductase
RA 1,865,007 A→G T26A (ACC→GCC)  yeaG → hypothetical protein
RA 1,865,362 T→C V144A (GTC→GCC)  yeaG → hypothetical protein
RA 1,871,984 A→G E129E (GAA→GAG yeaK → hypothetical protein
RA 1,874,785 T→C G363G (GGT→GGC yeaN → putative amino acid/amine transport protein
RA 1,877,795 T→C S60G (AGT→GGT)  yeaR ← hypothetical protein
RA 1,890,225 C→T R345R (CGG→CGA b1808 ← hypothetical protein
RA 1,892,514 T→C intergenic (+58/+62) b1810 → / ← b1811 hypothetical protein/hypothetical protein
RA 1,904,576 G→A P170L (CCC→CTC)  yebH ← hypothetical protein
RA 1,908,347 T→C G16G (GGT→GGC b1828 → putative transport protein
RA 1,917,590 T→C V688A (GTC→GCC)  b1834 → hypothetical protein
RA 1,919,873 G→A D24N (GAT→AAT)  b1836 → hypothetical protein
RA 1,920,485 T→C E170G (GAA→GGA)  b1838 ← protein phosphatase 1
RA 1,920,902 T→C Q31R (CAG→CGG)  b1838 ← protein phosphatase 1
RA 1,923,118 T→C intergenic (‑125/‑14) b1841 ← / → holE hypothetical protein/DNA polymerase III theta subunit
RA 1,923,720 T→C V86A (GTT→GCT)  b1843 → hypothetical protein
RA 1,924,185 A→G G14G (GGA→GGG b1844 → hypothetical protein
RA 1,928,564 T→C T70A (ACC→GCC)  yebG ← hypothetical protein
RA 1,930,097 (A)7→6 intergenic (+14/+42) purT → / ← eda phosphoribosylglycinamide formyltransferase 2/2‑keto‑3‑deoxygluconate 6‑phosphate aldolase
RA 1,938,811 T→C G262G (GGA→GGG yebA ← hypothetical protein
RA 1,941,713 T→C S92S (AGT→AGC yebI → hypothetical protein
RA 1,953,902 T→C Q377R (CAG→CGG)  b1872 ← biotin sulfoxide reductase 2
RA 1,957,451 T→C L140L (CTA→CTG b1875 ← hypothetical protein
RA 1,958,588 T→C M168T (ATG→ACG)  argS → arginine tRNA synthetase
RA 1,962,070 A→T P335P (CCT→CCA flhA ← FlhA
RA 1,962,105 C→T A324T (GCC→ACC)  flhA ← FlhA
RA 1,972,288 G→A T354M (ACG→ATG)  cheA ← CheA
RA 1,973,518 A→T D254E (GAT→GAA motB ← MotB
RA 1,973,993 T→C E96G (GAA→GGA)  motB ← MotB
RA 1,974,585 A→G R193R (CGT→CGC motA ← MotA
RA 1,975,051 G→A A38V (GCC→GTC)  motA ← MotA
MC JC 1,976,527 Δ776 bp insB5insA5 insB5, insA5
RA 1,980,940 +C coding (1/363 nt)
coding (627/627 nt)
araH ←
araH ←
ABC‑type arabinose transport system permease component
ABC‑type arabinose transport system permease component
RA 1,983,543 (C)5→4 coding (609/990 nt) araF ← L‑arabinose‑binding periplasmic protein
RA 1,983,890 T→C T88A (ACT→GCT)  araF ← L‑arabinose‑binding periplasmic protein
RA 1,987,280 A→G R78R (CGT→CGC yecH ← hypothetical protein
RA 1,990,664 A→G S59S (AGT→AGC pgsA ← phosphatidylglycerophosphate synthetase
RA 1,990,667 C→T Q58Q (CAG→CAA pgsA ← phosphatidylglycerophosphate synthetase
RA 1,998,039 A→G Y124H (TAC→CAC)  fliY ← putative periplasmic binding transport protein
RA 1,999,772 T→C H4R (CAC→CGC)  b1922 ← sigma factor 28
RA 2,008,480 +A coding (637/654 nt) yedK → hypothetical protein
RA 2,013,946 G→A Q26Q (CAG→CAA fliH → FliH
RA 2,017,469 G→A T354T (ACG→ACA fliK → flagellar hook‑length control protein
RA 2,025,930 G→A S42F (TCC→TTC)  b1956 ← hypothetical protein
RA 2,026,680 T→C T237A (ACG→GCG)  yedI ← hypothetical protein
RA 2,028,708 A→G V78A (GTG→GCG)  vsr ← DNA mismatch endonuclease
RA 2,037,676 (C)5→6 coding (177/1005 nt) b1971 → putative reductase
RA 2,043,272 A→G S130G (AGT→GGT)  b1978 → hypothetical protein
RA 2,044,033 (C)5→6 coding (1149/7152 nt) b1978 → hypothetical protein
RA 2,063,343 T→C A148A (GCA→GCG cobU ← cobinamide kinase/cobinamide phosphate guanylyltransferase
RA 2,066,300 T→C intergenic (‑957/‑330) trs56 ← / → b1995 IS5 transposase/hypothetical protein
RA 2,069,029 T→C S169S (AGT→AGC yeeP → putative histone
RA 2,071,598 A→G R680G (AGG→GGG)  b2000 → outer membrane fluffing protein
RA 2,072,030 T→A C824S (TGC→AGC)  b2000 → outer membrane fluffing protein
RA 2,072,384 (C)6→5 coding (2824/3120 nt) b2000 → outer membrane fluffing protein
RA 2,074,403 T→C V25A (GTG→GCG)  yeeS → putative DNA repair protein, RADC family
RA 2,075,196 (G)5→4 coding (63/369 nt) yeeU → putative structural protein
RA 2,078,049 A→G F189L (TTC→CTC)  yeeA ← hypothetical protein
RA 2,078,857 T→C Y143C (TAC→TGC)  sbmC ← SbmC
RA 2,081,054 A→G T93A (ACC→GCC)  sbcB → exonuclease I
RA 2,088,609 T→C P132P (CCT→CCC hisG → ATP phosphoribosyltransferase
RA 2,089,888 T→C L257P (CTC→CCC)  hisD → L‑histidinal:NAD+ oxidoreductase
RA 2,092,192 A→G T235A (ACC→GCC)  b2022 → imidazoleglycerolphosphate dehydratase
RA 2,094,539 T→C V225A (GTT→GCT)  hisF → imidazole glycerol phosphate synthase holoenzyme
RA 2,097,074 T→C T188A (ACC→GCC)  ugd ← UDP‑glucose 6‑dehydrogenase
RA 2,106,960 T→C D216G (GAC→GGC)  rfbX ← putative O‑antigen transporter
RA 2,107,690 C→T W157* (TGG→TGA rfbC ← dTDP‑6‑deoxy‑D‑glucose‑3,5 epimerase
RA 2,108,194 T→C Q283R (CAG→CGG)  rfbA ← glucose‑1‑phosphate thymidylyltransferase
RA 2,109,166 A→G V278A (GTC→GCC)  rfbD ← dTDP‑6‑deoxy‑L‑mannose‑dehydrogenase
RA 2,111,589 A→G M254T (ATG→ACG)  galF ← putative a UDP‑gal transferase
RA 2,111,654 T→C A232A (GCA→GCG galF ← putative a UDP‑gal transferase
RA 2,115,180 T→C Q416R (CAG→CGG)  wcaK ← putative galactokinase
RA 2,123,880 T→C Q123R (CAG→CGG)  wcaH ← GDP‑mannose mannosyl hydrolase
RA 2,133,804 T→C H106R (CAC→CGC)  wzb ← putative protein‑tyrosine‑phosphatase
RA 2,143,530 T→C L748P (CTG→CCG)  yegE → putative sensor‑type protein
RA 2,151,093 A→G C20R (TGC→CGC)  b2073 ← hypothetical protein
RA 2,153,900 +C coding (616/3123 nt) yegN → hypothetical protein
RA 2,162,354 A→G E19E (GAA→GAG baeR → BaeR
RA 2,164,290 T→C Y201H (TAC→CAC)  yegQ → hypothetical protein
RA 2,165,874 T→C L50L (TTA→TTG b2084 ← hypothetical protein
RA 2,170,345 C→T G184E (GGA→GAA)  gatD ← galactitol‑1‑phosphate dehydrogenase
RA 2,172,208 T→C M31V (ATG→GTG)  gatC ← PTS system galactitol‑specific enzyme IIC
JC 2,183,895 (G)7→10 intergenic (‑79/‑42) yohL ← / → yohM hypothetical protein/hypothetical protein
RA 2,185,017 Δ1 bp coding (38/339 nt) b2107 → hypothetical protein
RA 2,185,099 T→C S40S (AGT→AGC b2107 → hypothetical protein
RA 2,195,623 T→C intergenic (+1270/‑2676) metG → / → yehI methionine tRNA synthetase/putative regulator
RA 2,204,258 T→C W182R (TGG→CGG)  yehM → hypothetical protein
RA 2,207,023 A→G D346G (GAC→GGC)  yehP → hypothetical protein
RA 2,208,197 A→C T360P (ACC→CCC)  b2122 → hypothetical protein
RA 2,208,331 A→G S404S (TCA→TCG b2122 → hypothetical protein
RA 2,208,505 G→A R462R (CGG→CGA b2122 → hypothetical protein
RA 2,209,048 A→G intergenic (+84/‑185) b2122 → / → yehR hypothetical protein/hypothetical protein
RA 2,210,781 T→C M68V (ATG→GTG)  b2125 ← hypothetical protein
RA 2,216,746 G→C S252S (TCC→TCG yehZ ← putative transport system permease protein
RA 2,223,632 A→G L15P (CTG→CCG)  yohC ← hypothetical protein
RA 2,225,197 T→C T32A (ACC→GCC)  yohF ← putative oxidoreductase
RA 2,246,351 T→C S68G (AGT→GGT)  lysP ← lysine‑specific permease
RA 2,247,350 T→C S97G (AGT→GGT)  yeiE ← putative transcriptional regulator LYSR‑type
RA 2,250,142 T→C R141R (CGT→CGC yeiI → putative kinase
RA 2,254,317 T→C T347A (ACG→GCG)  yeiM ← putative transport system permease protein
RA 2,259,919 C→T R156H (CGC→CAC)  fruK ← fructose‑1‑phosphate kinase
RA 2,261,454 G→A A21V (GCG→GTG)  fruB ← PTS system, fructose‑specific IIA/fpr component
RA 2,264,802 T→C F180L (TTT→CTT)  yeiQ → putative oxidoreductase
RA 2,265,885 A→G S13G (AGC→GGC)  yeiR → hypothetical protein
RA 2,268,593 T→C intergenic (+28/‑153) spr → / → rtn putative lipoprotein/hypothetical protein
RA 2,276,343 T→C intergenic (‑86/+247) yejG ← / ← bcr hypothetical protein/bicyclomycin resistance protein
RA 2,281,515 A→G R151R (CGT→CGC yejK ← hypothetical protein
RA 2,281,741 T→C D76G (GAC→GGC)  yejK ← hypothetical protein
RA 2,284,989 (C)5→4 coding (1932/2511 nt) yejO ← putative ATP‑binding component of a transport system
RA 2,289,578 G→A L285L (CTG→TTG)  ccmH ← CcmH
RA 2,290,493 A→G N164N (AAT→AAC dsbE ← disulfide oxidoreductase
RA 2,296,123 T→C T53A (ACC→GCC)  napC ← cytochrome c‑type protein
RA 2,297,335 A→G G88G (GGT→GGC napH ← ferredoxin‑type protein: electron transfer
RA 2,299,266 T→C N503S (AAC→AGC)  napA ← putative nitrate reductase 3
RA 2,306,256 T→C E127G (GAA→GGA)  yojI ← putative ATP‑binding component of a transport system
RA 2,309,476 C→T A27T (GCC→ACC)  yojL ← hypothetical protein
RA 2,311,335 (T)5→4 intergenic (‑566/‑173) ompC ← / → yojN outer membrane protein 1b (Ib;c)/putative 2‑component sensor protein
RA 2,317,837 T→C A4A (GCA→GCG rcsC ← RcsC
RA 2,321,092 G→A A403T (GCC→ACC)  atoC → ornithine decarboxylase antizyme
RA 2,324,469 (G)6→7 coding (341/1185 nt) atoB → acetyl‑CoA acetyltransferase
RA 2,325,759 A→G G135G (GGT→GGC b2225 ← hypothetical protein
RA 2,327,687 A→G V44A (GTG→GCG)  b2226 ← hypothetical protein
RA 2,331,739 A→G intergenic (‑3922/+617) b2226 ← / ← b2229 hypothetical protein/hypothetical protein
RA 2,343,154 T→C R90R (CGT→CGC nrdA → ribonucleoside diphosphate reductase 1 alpha subunit, B1
RA 2,345,161 T→C C759C (TGT→TGC nrdA → ribonucleoside diphosphate reductase 1 alpha subunit, B1
RA 2,349,989 T→C M136V (ATG→GTG)  glpT ← sn‑glycerol‑3‑phosphate permease
RA 2,360,682 T→C A324A (GCA→GCG b2249 ← hypothetical protein
RA 2,362,769 G→A E66K (GAA→AAA)  yfaO → hypothetical protein
RA 2,365,769 T→C C227R (TGC→CGC)  b2254 → putative sugar transferase
RA 2,370,869 C→T A98V (GCG→GTG)  b4533 → hypothetical protein
RA 2,370,890 T→C V105A (GTG→GCG)  b4533 → hypothetical protein
RA 2,375,871 T→C N470S (AAC→AGC)  menD ← 2‑oxoglutarate decarboxylase
RA 2,387,335 T→C V68A (GTA→GCA)  b2275 → hypothetical protein
RA 2,391,348 A→G A573A (GCT→GCC nuoL ← NADH dehydrogenase I chain L
RA 2,392,487 T→C T194A (ACC→GCC)  nuoL ← NADH dehydrogenase I chain L
RA 2,393,734 A→G G61G (GGT→GGC nuoJ ← NADH dehydrogenase I chain J
RA 2,406,831 A→G intergenic (+33/‑51) b2290 → / → b2291 putative aminotransferase/putative alpha helix protein
RA 2,409,290 G→A A28V (GCG→GTG)  yfbS ← putative transport protein
RA 2,409,738 T→C A130A (GCA→GCG yfbT ← putative phosphatase
RA 2,413,512 T→C I249T (ATC→ACC)  pta → phosphotransacetylase
RA 2,417,813 T→C intergenic (‑8/+48) b2300 ← / ← yfcF hypothetical protein/hypothetical protein
JC 2,419,010 (C)6→9 coding (370/648 nt) yfcG → putative S‑transferase
RA 2,419,074 A→G N145S (AAC→AGC)  yfcG → putative S‑transferase
RA 2,425,773 A→G G13G (GGT→GGC argT ← ArgT
RA 2,429,483 T→C E65E (GAA→GAG dedD ← putative lipoprotein
RA 2,438,697 A→C L310R (CTG→CGG)  fabB ← 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
RA 2,442,106 A→G S28S (AGT→AGC b2325 ← hypothetical protein
RA 2,448,171 T→C N147S (AAC→AGC)  b2333 ← putative fimbrial‑like protein
RA 2,448,289 C→T A108T (GCA→ACA)  b2333 ← putative fimbrial‑like protein
RA 2,449,280 T→C T109A (ACC→GCC)  b2335 ← putative fimbrial protein
RA 2,458,272 (G)5→4 coding (218/1311 nt) b2342 ← putative acyltransferase
RA 2,458,650 +G intergenic (‑161/+20) b2342 ← / ← b2343 putative acyltransferase/hypothetical protein
RA 2,461,706 T→C S225S (AGT→AGC b2345 → hypothetical protein
RA 2,464,010 T→C H230H (CAT→CAC yfdC → putative transport
RA 2,465,657 T→C Y365H (TAT→CAT)  intC → putative prophage Sf6‑like integrase
RA 2,469,173 T→C D122G (GAC→GGC)  b2354 ← hypothetical protein
RA 2,470,298 A→G I37T (ATT→ACT)  b2356 ← hypothetical protein
RA 2,472,861 T→C G270G (GGT→GGC b2360 → hypothetical protein
RA 2,476,636 G→A G257D (GGT→GAT)  dsdX → transport system permease
RA 2,487,208 (A)6→5 coding (20/1185 nt) yfdE ← hypothetical protein
RA 2,488,381 A→G I530I (ATT→ATC b2373 ← hypothetical protein
RA 2,501,888 +C coding (618/2496 nt) b2383 ← putative PTS system enzyme IIA component, enzyme I
RA 2,505,495 C→T Q140Q (CAG→CAA b2386 ← putative transport protein
RA 2,515,312 T→C M181V (ATG→GTG)  b2395 ← hypothetical protein
RA 2,519,341 A→G noncoding (69/76 nt) lysV → tRNA‑Lys
RA 2,531,984 C→T G67G (GGC→GGT ptsH → PTS system protein HPr
RA 2,532,993 A→G D303G (GAC→GGC)  ptsI → PEP‑protein phosphotransferase system enzyme I
RA 2,534,957 A→G S101P (TCG→CCG)  pdxK ← pyridoxal/pyridoxine/pyridoxamine kinase
RA 2,552,312 T→C V297V (GTA→GTG yfeG ← putative ARAC‑type regulatory protein
RA 2,555,272 A→G S16P (TCA→CCA)  eutC ← ethanolamine ammonia‑lyase, light chain
RA 2,556,088 G→A R204R (CGC→CGT b2441 ← ethanolamine ammonia‑lyase, heavy chain
RA 2,557,200 T→C V137A (GTG→GCG)  b2442 → putative prophage integrase
RA 2,559,003 G→A intergenic (+85/‑385) b2443 → / → b2444 hypothetical protein/hypothetical protein
RA 2,560,887 T→C V115A (GTG→GCG)  b2447 → hypothetical protein
RA 2,561,503 A→G intergenic (+366/‑94) b2447 → / → b2448 hypothetical protein/hypothetical protein
RA 2,562,351 G→A G118S (GGC→AGC)  b2449 → hypothetical protein
RA 2,563,585 (C)5→6 coding (1320/1404 nt) b2451 ← hypothetical protein
RA 2,574,803 A→G L532P (CTG→CCG)  b2463 ← putative multimodular enzyme
RA 2,579,447 T→C S598P (TCG→CCG)  tktB → transketolase 2 isozyme
RA 2,582,538 A→G G336G (GGT→GGC yffG ← putative oxidoreductase Fe‑S subunit
RA 2,583,799 (T)7→6 coding (49/1701 nt) narQ → NarQ
RA 2,585,577 G→A intergenic (+126/‑38) narQ → / → acrD NarQ/AcrD
RA 2,586,558 A→G Q315R (CAG→CGG)  acrD → AcrD
RA 2,590,989 T→C intergenic (+7/+103) b4537 → / ← ypfH hypothetical protein/hypothetical protein
RA 2,596,487 T→C Q133Q (CAA→CAG nlpB ← lipoprotein‑34
RA 2,597,825 A→G intergenic (‑45/‑101) dapA ← / → b2479 dihydrodipicolinate synthase/GcvR
RA 2,613,076 T→C T276A (ACT→GCT)  perM ← putative permease
RA 2,621,188 A→G Y42C (TAT→TGT)  ppk → polyphosphate kinase
RA 2,630,942 T→C K383K (AAA→AAG guaB ← IMP dehydrogenase
RA 2,631,832 (T)6→5 coding (259/1467 nt) guaB ← IMP dehydrogenase
RA 2,644,603 (G)6→5 coding (743/2313 nt) pbpC ← putative peptidoglycan enzyme
RA 2,645,360 T→C I1650V (ATT→GTT)  b2520 ← hypothetical protein
RA 2,647,298 T→C T1004A (ACG→GCG)  b2520 ← hypothetical protein
RA 2,655,220 T→C D579G (GAC→GGC)  hscA ← HscA
RA 2,661,865 T→A L135Q (CTG→CAG)  suhB → SuhB
RA 2,665,031 A→G V279A (GTG→GCG)  hcaT ← HcaT
RA 2,666,143 A→G I258I (ATT→ATC hcaR ← HcaR
RA 2,669,800 T→C C186R (TGT→CGT)  hcaB → 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase
RA 2,673,594 T→C Y74C (TAC→TGC)  yphC ← putative oxidoreductase
RA 2,675,068 T→C E438E (GAA→GAG yphE ← putative ATP‑binding component of a transport system
RA 2,690,602 T→C T988A (ACT→GCT)  purL ← phosphoribosylformyl‑glycineamide synthetase
RA 2,691,024 A→T F847Y (TTT→TAT)  purL ← phosphoribosylformyl‑glycineamide synthetase
RA 2,693,606 A→G intergenic (‑43/‑353) purL ← / → yfhD phosphoribosylformyl‑glycineamide synthetase/putative periplasmic binding transport protein
RA 2,694,050 A→G Y31C (TAC→TGC)  yfhD → putative periplasmic binding transport protein
RA 2,696,865 T→C P53P (CCT→CCC yfhH → hypothetical protein
RA 2,699,813 T→C E226G (GAA→GGA)  recO ← RecO
RA 2,711,991 T→C L359P (CTG→CCG)  srmB → ATP‑dependent RNA helicase
RA 2,718,460 T→C I163T (ATC→ACC)  yfiQ → hypothetical protein
RA 2,720,435 A→G L821L (TTA→TTG yfiQ → hypothetical protein
RA 2,729,373 +C intergenic (‑195/+247) rrsG ← / ← clpB 16S ribosomal RNA/ClpB
RA 2,732,197 T→C intergenic (‑4/+126) clpB ← / ← yfiH ClpB/hypothetical protein
RA 2,732,361 T→C T232A (ACC→GCC)  yfiH ← hypothetical protein
RA 2,736,290 A→G T176A (ACC→GCC)  pheA → chorismate mutase‑P
RA 2,746,200 T→C S73S (AGT→AGC b2611 → hypothetical protein
RA 2,747,389 Δ1 bp coding (572/591 nt) b4540 → hypothetical protein
RA 2,748,983 T→C A44A (GCT→GCC yfjB → hypothetical protein
RA 2,751,091 G→C A426P (GCT→CCT)  recN → RecN
RA 2,753,655 T→C intergenic (+256/‑525) smpB → / → intA small protein B/prophage CP4‑57 integrase
RA 2,754,691 T→C V171A (GTT→GCT)  intA → prophage CP4‑57 integrase
RA 2,757,775 T→C L257P (CTC→CCC)  yfjI → hypothetical protein
RA 2,766,382 C→G P218A (CCC→GCC)  b2632 → putative GTP‑binding protein
RA 2,766,423 G→A R231R (CGG→CGA b2632 → putative GTP‑binding protein
RA 2,766,427 2 bp→AC coding (697‑698/864 nt) b2632 → putative GTP‑binding protein
RA 2,766,473 A→G D248G (GAT→GGT)  b2632 → putative GTP‑binding protein
RA 2,766,475 A→G T249A (ACC→GCC)  b2632 → putative GTP‑binding protein
RA 2,774,233 T→C G98G (GGT→GGC yfjX → hypothetical protein
RA 2,778,911 T→C T656A (ACT→GCT)  ypjA ← putative ATP‑binding component of a transport system
RA 2,781,020 +G intergenic (‑144/+65) ypjA ← / ← b2648 putative ATP‑binding component of a transport system/hypothetical protein
RA 2,781,027 C→G intergenic (‑151/+58) ypjA ← / ← b2648 putative ATP‑binding component of a transport system/hypothetical protein
RA 2,785,180 Δ1 bp coding (413/495 nt) b2655 → hypothetical protein
RA 2,790,474 T→C L394P (CTG→CCG)  gabD → succinate‑semialdehyde dehydrogenase, NADP‑dependent activity
RA 2,794,501 A→G S103P (TCT→CCT)  ygaU ← hypothetical protein
RA 2,796,091 A→G intergenic (+26/+21) ygaP → / ← stpA hypothetical protein/StpA
RA 2,798,359 A→G T65A (ACT→GCT)  b2672 → hypothetical protein
RA 2,806,271 T→C intergenic (+126/‑1367) proX → / → b2682 high‑affinity transport system for glycine betaine and proline/hypothetical protein
RA 2,812,859 Δ1 bp intergenic (‑105/+46) ygaG ← / ← gshA hypothetical protein/gamma‑glutamate‑cysteine ligase
RA 2,820,144 Δ1 bp intergenic (+24/+18) b4542 → / ← oraA hypothetical protein/OraA
RA 2,822,541 T→C Q353Q (CAA→CAG mltB ← membrane‑bound lytic murein transglycosylase B
RA 2,823,915 A→G K21E (AAG→GAG)  srlA → PTS system, glucitol/sorbitol‑specific IIC component
RA 2,824,797 T→C F128S (TTT→TCT)  srlE → PTS system glucitol/sorbitol‑specific enzyme IIBC component
RA 2,825,077 T→C C221C (TGT→TGC srlE → PTS system glucitol/sorbitol‑specific enzyme IIBC component
RA 2,825,102 T→C F230L (TTC→CTC)  srlE → PTS system glucitol/sorbitol‑specific enzyme IIBC component
RA 2,834,144 T→C L435L (TTA→TTG hypF ← transcriptional regulatory protein
RA 2,838,044 +G coding (498/1458 nt) ascF → PTS system enzyme IIBC
RA 2,838,055 Δ1 bp coding (509/1458 nt) ascF → PTS system enzyme IIBC
RA 2,840,573 T→C intergenic (+136/+23) ascB → / ← hycI 6‑phospho‑beta‑glucosidase/HycI
RA 2,842,033 G→T R67R (CGC→CGA hycG ← hydrogenase activity
RA 2,842,316 T→C T154A (ACT→GCT)  hycF ← putative iron‑sulfur protein of hydrogenase 3
RA 2,844,596 A→G R280R (CGT→CGC hycD ← membrane‑spanning protein of hydrogenase 3
RA 2,851,044 A→G T296A (ACG→GCG)  hypD → HypD
RA 2,862,683 T→C V142A (GTT→GCT)  ygbM → hypothetical protein
RA 2,862,881 T→C L208P (CTA→CCA)  ygbM → hypothetical protein
RA 2,868,544 T→C S262G (AGT→GGT)  ygbO ← putative hydrogenase subunit
RA 2,872,502 T→C D314G (GAT→GGT)  cysN ← ATP‑sulfurylase subunit 1
RA 2,877,392 T→C E135G (GAG→GGG)  b2755 ← hypothetical protein
RA 2,885,388 A→G intergenic (‑146/+213) ygcB ← / ← cysH hypothetical protein/3'‑phosphoadenosine 5'‑phosphosulfate reductase
RA 2,885,561 (C)5→4 intergenic (‑319/+40) ygcB ← / ← cysH hypothetical protein/3'‑phosphoadenosine 5'‑phosphosulfate reductase
RA 2,896,819 +C coding (622/657 nt) ygcU ← putative oxidoreductase subunit
RA 2,902,688 A→G intergenic (+1292/+81) ygcE → / ← ygcF putative kinase/hypothetical protein
RA 2,915,759 A→G D894G (GAT→GGT)  barA → sensor‑regulator
RA 2,925,058 A→C E243D (GAA→GAC ygdH → hypothetical protein
RA 2,933,024 T→C R256R (CGT→CGC fucP → fucose permease
RA 2,935,409 T→C intergenic (+28/‑51) fucI → / → fucK L‑fucose isomerase/L‑fuculokinase
RA 2,940,324 G→A A89V (GCC→GTC)  gcvA ← GcvA
RA 2,941,864 T→C M169T (ATG→ACG)  b2810 → hypothetical protein
RA 2,947,112 T→C intergenic (‑80/‑152) b2817 ← / → argA putative amidase/N‑acetylglutamate synthase
RA 2,947,355 T→C M31T (ATG→ACG)  argA → N‑acetylglutamate synthase
RA 2,953,377 T→C T217A (ACG→GCG)  recB ← RecB
RA 2,954,264 A→T D881E (GAT→GAA ptr ← protease III
RA 2,958,357 G→A S698S (AGC→AGT recC ← RecC
RA 2,965,001 T→C M486V (ATG→GTG)  ptsP ← PtsP
RA 2,971,616 A→G L90P (CTG→CCG)  ygeD ← putative resistance protein
RA 2,973,807 A→G V77A (GTT→GCT)  aas ← 2‑acyl‑glycerophospho‑ethanolamine acyltransferase
RA 2,975,807 A→G L372P (CTG→CCG)  lysA ← diaminopimelate decarboxylase
RA 2,977,219 T→C H59H (CAT→CAC lysR → LysR
RA 2,977,854 T→C L271P (CTG→CCG)  lysR → LysR
RA 2,979,391 T→C T272A (ACC→GCC)  araE ← low‑affinity L‑arabinose transport system proton symport protein
RA 2,991,845 T→C N62N (AAT→AAC b2853 → hypothetical protein
RA 2,997,285 (T)6→7 coding (629/756 nt) b2865 ← putative lipoprotein
RA 2,997,977 T→C intergenic (‑64/‑390) b2865 ← / → b2866 putative lipoprotein/hypothetical protein
RA 3,005,399 +C coding (1044/1092 nt) ygeW → putative carbamoyl transferase
RA 3,008,642 C→T A198A (GCC→GCT b2873 → hypothetical protein
RA 3,011,893 G→A A123V (GCG→GTG)  b2875 ← putative synthases
RA 3,016,772 T→C C898R (TGC→CGC)  b2878 → putative oxidoreductase Fe‑S subunit
RA 3,018,800 T→C F80F (TTT→TTC b2880 → hypothetical protein
RA 3,019,825 G→A P163P (CCG→CCA b2881 → putative dehydrogenase
RA 3,025,603 T→C G154G (GGT→GGC ygfQ → hypothetical protein
RA 3,025,676 +C coding (535/570 nt) ygfQ → hypothetical protein
RA 3,026,063 A→G D129G (GAC→GGC)  ygfR → putative oxidoreductase
RA 3,036,938 T→C T276A (ACG→GCG)  xerD ← XerD
RA 3,046,045 T→C V339V (GTA→GTG gcvP ← glycine decarboxylase
RA 3,047,558 T→C V4V (GTA→GTG gcvH ← GcvH
RA 3,064,509 T→C M229V (ATG→GTG)  b2921 ← putative transcriptional regulator LYSR‑type
RA 3,071,928 T→C intergenic (‑217/+68) epd ← / ← yggC D‑erythrose 4‑phosphate dehydrogenase/putative kinase
RA 3,073,511 A→G L231P (CTG→CCG)  yggF ← hypothetical protein
RA 3,074,121 (T)5→6 coding (82/966 nt) yggF ← hypothetical protein
RA 3,075,220 (T)5→6 coding (256/357 nt) yggP ← hypothetical protein
RA 3,077,514 Δ1 bp intergenic (‑165/+149) cmtB ← / ← tktA PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme
RA 3,077,640 +G intergenic (‑291/+23) cmtB ← / ← tktA PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme
RA 3,077,905 A→G S584P (TCG→CCG)  tktA ← transketolase 1 isozyme
RA 3,078,245 C→G G470G (GGG→GGC tktA ← transketolase 1 isozyme
RA 3,082,961 A→G S324P (TCC→CCC)  speA ← biosynthetic arginine decarboxylase
RA 3,091,676 A→G Q53R (CAG→CGG)  yqgF → hypothetical protein
RA 3,099,661 (A)5→6 intergenic (‑19/+164) yggN ← / ← b2959 hypothetical protein/hypothetical protein
RA 3,100,603 A→G F90L (TTC→CTC)  yggH ← hypothetical protein
RA 3,107,469 +C intergenic (‑296/‑101) b2965 ← / → yqgA ornithine decarboxylase isozyme/putative transport protein
RA 3,108,438 C→A noncoding (56/76 nt) pheV → tRNA‑Phe
RA 3,112,040 T→C A110A (GCA→GCG b2972 ← putative peptidase
RA 3,115,116 +C coding (2013/2028 nt) b2974 ← putative endoglucanase
RA 3,123,585 +G coding (953/2286 nt) glcF ← glycolate oxidase iron‑sulfur subunit
RA 3,125,293 T→C G248G (GGA→GGG glcD ← glycolate oxidase subunit D
RA 3,125,359 T→C K226K (AAA→AAG glcD ← glycolate oxidase subunit D
RA 3,126,892 T→C H202H (CAT→CAC glcC → GlcC
RA 3,127,469 G→A G254G (GGC→GGT b2981 ← hypothetical protein
RA 3,129,641 C→T V261V (GTG→GTA b2983 ← hypothetical protein
RA 3,130,334 A→G V30V (GTT→GTC b2983 ← hypothetical protein
RA 3,141,722 A→G L153P (CTG→CCG)  hybB ← putative cytochrome Ni/Fe component of hydrogenase‑2
RA 3,145,571 A→G intergenic (‑819/‑341) b2998 ← / → b3001 hypothetical protein/putative reductase
RA 3,152,247 +C intergenic (+10/+29) yghB → / ← yqhC hypothetical protein/putative ARAC‑type regulatory protein
JC 3,156,257 (CCA)2→1 coding (594‑596/930 nt) yqhG → hypothetical protein
RA 3,158,202 +C coding (961/975 nt) ygiRQ ← Fe‑S oxidoreductase
RA 3,160,251 A→G T145T (ACT→ACC sufI ← suppressor of ftsI
RA 3,162,333 A→G Y553H (TAT→CAT)  parC ← DNA topoisomerase IV subunit A
RA 3,166,935 2 bp→CG coding (312‑313/483 nt) b3023 ← hypothetical protein
RA 3,175,525 (C)6→7 coding (402/630 nt) yqiE ← hypothetical protein
RA 3,183,028 T→C V70A (GTC→GCC)  b3042 → hypothetical protein
RA 3,184,181 (T)5→6 intergenic (+200/‑22) ygiL → / → yi215 putative fimbrial‑like protein/IS2 hypothetical protein
RA 3,185,776 T→C F121L (TTC→CTC)  yqiG → putative membrane protein
RA 3,185,807 T→C F131S (TTT→TCT)  yqiG → putative membrane protein
RA 3,186,266 T→C V284A (GTC→GCC)  yqiG → putative membrane protein
RA 3,188,237 T→C V114A (GTG→GCG)  b3047 → putative membrane protein
RA 3,191,015 G→A G46S (GGT→AGT)  b3051 → putative membrane protein
RA 3,202,618 T→C I95T (ATC→ACC)  ygiH → hypothetical protein
RA 3,211,779 T→C R364R (CGT→CGC rpoD → RNA polymerase sigma(70)
RA 3,212,918 A→G V66A (GTC→GCC)  ygjF ← hypothetical protein
RA 3,215,450 T→C Q423R (CAG→CGG)  aer ← Aer
RA 3,221,097 2 bp→GC coding (824‑825/3093 nt) b3076 → evolved beta‑D‑galactosidase alpha subunit
RA 3,221,280 T→C L336P (CTG→CCG)  b3076 → evolved beta‑D‑galactosidase alpha subunit
RA 3,222,944 4 bp→AGCA coding (2671‑2674/3093 nt) b3076 → evolved beta‑D‑galactosidase alpha subunit
RA 3,223,631 A→G E90G (GAA→GGA)  ebgC → evolved beta‑D‑galactosidase beta subunit
RA 3,224,879 Δ1 bp coding (1005/1434 nt) ygjI → putative oxidoreductase
RA 3,224,926 +C coding (1052/1434 nt) ygjI → putative oxidoreductase
RA 3,228,614 G→A A696T (GCT→ACT)  ygjK → putative isomerase
RA 3,233,455 T→C D21G (GAC→GGC)  b3084 ← hypothetical protein
RA 3,236,177 Δ1 bp intergenic (+239/‑45) ygjR → / → ygjT hypothetical protein/putative transport protein
RA 3,236,735 +C coding (514/966 nt) ygjT → putative transport protein
RA 3,236,758 Δ1 bp coding (537/966 nt) ygjT → putative transport protein
RA 3,237,242 +C intergenic (+55/‑342) ygjT → / → ygjU putative transport protein/putative transport protein
RA 3,237,247 +C intergenic (+60/‑337) ygjT → / → ygjU putative transport protein/putative transport protein
RA 3,243,762 T→C V340A (GTT→GCT)  exuT → ExuT
RA 3,251,140 G→C L239V (CTT→GTT)  yhaJ ← putative transcriptional regulator LYSR‑type
RA 3,251,675 A→G R60R (CGT→CGC yhaJ ← putative transcriptional regulator LYSR‑type
RA 3,253,742 Δ1 bp coding (551/552 nt) yhaNM ← hypothetical protein
RA 3,253,781 T→C E171G (GAG→GGG)  yhaNM ← hypothetical protein
RA 3,255,594 Δ1 bp coding (4/1278 nt) yhaO ← putative transport system permease protein
RA 3,255,616 Δ1 bp intergenic (‑19/+312) yhaO ← / ← yhaP putative transport system permease protein/putative L‑serine dehydratase
RA 3,256,893 +C coding (405/423 nt) yhaQ ← putative L‑serine dehydratase
RA 3,257,838 +G coding (2222/2241 nt) tdcE ← putative formate acetyltransferase 3
RA 3,263,134 A→G V179A (GTG→GCG)  tdcB ← threonine dehydratase
RA 3,277,670 T→C R372R (CGT→CGC agaZ → putative tagatose‑6‑phosphate kinase 2
RA 3,279,197 A→C R145S (AGA→AGC agaA → putative N‑acetylgalactosamine‑6‑phosphate deacetylase
RA 3,284,393 A→G E161E (GAA→GAG agaI → putative galactosamine‑6‑phosphate isomerase
RA 3,286,677 A→G T75A (ACT→GCT)  yraJ → putative outer membrane protein
RA 3,289,431 T→C G150G (GGT→GGC yraK → putative fimbrial protein
RA 3,289,828 G→A V283I (GTA→ATA)  yraK → putative fimbrial protein
RA 3,295,175 T→C Q202R (CAG→CGG)  yraQ ← hypothetical protein
RA 3,300,625 G→A V172I (GTC→ATC)  yhbV → hypothetical protein
RA 3,305,090 C→T D155N (GAC→AAC)  deaD ← inducible ATP‑independent RNA helicase
RA 3,309,164 A→G R54R (CGT→CGC rpsO ← 30S ribosomal subunit protein S15
RA 3,316,316 T→C R13R (CGT→CGC argG → argininosuccinate synthetase
RA 3,316,615 T→C M113T (ATG→ACG)  argG → argininosuccinate synthetase
RA 3,327,704 (C)5→6 coding (1101/1434 nt) dacB → D‑alanyl‑D‑alanine carboxypeptidase fraction B
RA 3,333,953 A→G G61G (GGT→GGC murA ← UDP‑N‑glucosamine 1‑carboxyvinyltransferase
RA 3,334,354 T→C I36V (ATT→GTT)  yrbA ← hypothetical protein
RA 3,337,699 T→C Q3R (CAG→CGG)  yrbF ← putative ATP‑binding component of a transport system
RA 3,339,304 +C coding (398/987 nt) yrbH → putative isomerase
RA 3,340,190 A→G T93A (ACT→GCT)  yrbI → hypothetical protein
RA 3,345,920 C→T intergenic (+41/‑173) ptsO → / → yrbL phosphocarrier protein HPr‑like NPr/hypothetical protein
RA 3,351,337 T→C T117A (ACC→GCC)  yhcC ← hypothetical protein
RA 3,352,254 2 bp→GC intergenic (‑569/‑12) yhcC ← / → gltB hypothetical protein/glutamate synthase large subunit
RA 3,352,410 C→T I48I (ATC→ATT gltB → glutamate synthase large subunit
RA 3,353,950 A→G T562A (ACC→GCC)  gltB → glutamate synthase large subunit
RA 3,356,616 T→C A1450A (GCT→GCC gltB → glutamate synthase large subunit
RA 3,358,838 G→A A10T (GCT→ACT)  gltF → GltF
RA 3,359,299 T→C G163G (GGT→GGC gltF → GltF
RA 3,362,693 T→C L751P (CTC→CCC)  yhcD → putative outer membrane protein
RA 3,365,636 A→G R59G (AGG→GGG)  yhcG → hypothetical protein
RA 3,366,054 A→G H198R (CAC→CGC)  yhcG → hypothetical protein
RA 3,367,240 T→C Y249C (TAT→TGT)  yhcI ← putative NAGC‑like transcriptional regulator
RA 3,370,778 A→G V145A (GTA→GCA)  nanA ← N‑acetylneuraminate lyase
RA 3,374,263 T→C Q50R (CAA→CGA)  sspB ← stringent starvation protein B
RA 3,374,589 A→G L156P (CTG→CCG)  sspA ← stringent starvation protein A
RA 3,383,369 C→T T83M (ACG→ATG)  yhcN → hypothetical protein
RA 3,389,812 Δ1 bp intergenic (‑149/+4151) tldD ← / ← cafA TldD/CafA
RA 3,393,106 Δ1 bp intergenic (‑3443/+857) tldD ← / ← cafA TldD/CafA
RA 3,393,906 T→C intergenic (‑4243/+57) tldD ← / ← cafA TldD/CafA
RA 3,403,945 T→C V131A (GTA→GCA)  accC → acetyl CoA carboxylase
RA 3,405,469 T→C W76R (TGG→CGG)  b3258 → sodium/pantothenate symporter
RA 3,407,232 G→A A176T (GCG→ACG)  prmA → PrmA
RA 3,410,192 T→C intergenic (+18/‑66) b3262 → / → yhdU putative methyltransferase/hypothetical protein
RA 3,411,069 T→C T12A (ACC→GCC)  envR ← putative transcriptional regulator
RA 3,418,628 A→G A286A (GCA→GCG b3269 → putative transport system permease protein
RA 3,418,840 +G coding (1070/1089 nt) b3269 → putative transport system permease protein
RA 3,421,120 Δ1 bp noncoding (60/121 nt) rrfF ← 5S ribosomal RNA
RA 3,427,075 T→C V68A (GTC→GCC)  b3279 → putative transferase
RA 3,427,261 T→C V130A (GTC→GCC)  b3279 → putative transferase
RA 3,429,527 Δ1 bp coding (40/510 nt) yrdD ← putative DNA topoisomerase
RA 3,430,453 +C coding (745/747 nt) smf ← putative Rossmann‑fold nucleotide‑binding protein
RA 3,433,176 T→C R111R (CGT→CGC sun → hypothetical protein
RA 3,434,055 A→G P404P (CCA→CCG sun → hypothetical protein
RA 3,450,109 G→A P152L (CCG→CTG)  rplC ← 50S ribosomal subunit protein L3
RA 3,454,538 T→C N175N (AAT→AAC b3325 → YheF
RA 3,456,098 A→G Q41Q (CAA→CAG yheG → YheG
RA 3,463,677 C→T G166G (GGC→GGT hofD → leader peptidase
RA 3,472,167 A→C V8G (GTA→GGA)  rpsL ← 30S ribosomal subunit protein S12
RA 3,475,807 T→C T110A (ACT→GCT)  slyD ← FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA 3,483,814 C→T H20Y (CAC→TAC)  crp → cyclic AMP receptor protein
RA 3,484,054 T→C Y100H (TAC→CAC)  crp → cyclic AMP receptor protein
RA 3,490,327 T→C P41P (CCT→CCC yhfC → putative transport
RA 3,494,690 A→G A17A (GCA→GCG nirC → Nitrite transporter
RA 3,496,430 T→C I322I (ATT→ATC cysG → uroporphyrinogen III methylase
RA 3,500,309 Δ1 bp coding (333/363 nt) b3372 → hypothetical protein
RA 3,507,831 T→C T262A (ACT→GCT)  yhfX ← hypothetical protein
RA 3,509,089 T→C N5S (AAC→AGC) 
E225E (GAA→GAG
yhfY ←
yhfZ ←
hypothetical protein
hypothetical protein
RA 3,509,958 Δ1 bp intergenic (‑195/+314) yhfZ ← / ← trpS hypothetical protein/tryptophan tRNA synthetase
RA 3,510,121 +G intergenic (‑358/+151) yhfZ ← / ← trpS hypothetical protein/tryptophan tRNA synthetase
RA 3,525,330 T→C T408T (ACT→ACC yrfF → putative dehydrogenase
RA 3,533,160 A→G L116P (CTG→CCG)  envZ ← protein histidine kinase
RA 3,537,405 +GC intergenic (+61/‑394) b3407 → / → feoA hypothetical protein/ferrous iron transport protein A
RA 3,539,774 G→A A578T (GCC→ACC)  feoB → ferrous iron transport protein B
RA 3,544,357 +G coding (163/1314 nt) gntT → gluconate permease
RA 3,544,360 +G coding (166/1314 nt) gntT → gluconate permease
RA 3,544,363 +C coding (169/1314 nt) gntT → gluconate permease
RA 3,544,971 T→C G259G (GGT→GGC gntT → gluconate permease
RA 3,548,005 C→T G701D (GGT→GAT)  malP ← maltodextrin phosphorylase
RA 3,554,088 +C coding (2/624 nt) yhgKJ ← RNA phosphage cyclase
RA 3,554,113 Δ1 bp coding (372/396 nt) yhgKJ ← RNA phosphage cyclase
RA 3,554,118 +C coding (367/396 nt) yhgKJ ← RNA phosphage cyclase
RA 3,558,932 2 bp→GC coding (153‑154/831 nt) glpG ← GlpG
RA 3,566,875 A→G R29R (CGT→CGC glgC ← glucose‑1‑phosphate adenylyltransferase
RA 3,568,434 A→G R173R (CGT→CGC glgX ← GlgX
RA 3,573,700 +C intergenic (+403/+997) yhgN → / ← gntK hypothetical protein/gluconokinase 2
RA 3,575,446 +G coding (912/942 nt) gntR ← GntR
RA 3,579,597 A→G H35R (CAT→CGT)  yhhZ → hypothetical protein
RA 3,582,668 G→A L93L (TTG→TTA yrhB → hypothetical protein
RA 3,586,561 T→C N97S (AAC→AGC)  ugpC ← ATP‑binding component of sn‑glycerol 3‑phosphate transport system
RA 3,588,897 A→G Y354H (TAT→CAT)  ugpB ← UgpB
RA 3,590,502 A→G T189T (ACT→ACC b3454 ← ATP‑binding component of leucine transport
RA 3,595,797 A→G G61G (GGA→GGG yhhK → hypothetical protein
RA 3,596,295 A→G V332A (GTG→GCG)  b3460 ← LivJ
RA 3,597,072 T→C D73G (GAC→GGC)  b3460 ← LivJ
RA 3,597,539 T→C intergenic (‑250/+21) b3460 ← / ← rpoH LivJ/sigma(32) factor
RA 3,602,962 A→G Y94H (TAC→CAC)  yhhM ← putative receptor
RA 3,604,952 T→C S291P (TCC→CCC)  zntA → zinc‑transporting ATPase
RA 3,614,182 T→C F124L (TTC→CTC)  nikC → NikC
RA 3,620,852 A→G T1344A (ACT→GCT)  rhsB → RhsB
RA 3,621,415 T→C intergenic (+2/‑594) yhhH → / → yhhI hypothetical protein/putative receptor
RA 3,624,135 A→G N100N (AAT→AAC b3485 ← putative transporter
RA 3,624,700 T→C I807V (ATT→GTT)  yhiH ← putative ATP‑binding component of a transport system, fragment 1
RA 3,627,142 +G intergenic (‑24/+23) yhiH ← / ← yhiI putative ATP‑binding component of a transport system, fragment 1/putative membrane protein
RA 3,628,759 G→A R488C (CGT→TGT)  yhiJ ← hypothetical protein
RA 3,634,228 A→G R271R (CGT→CGC yhiN ← hypothetical protein
RA 3,637,944 T→C H68H (CAT→CAC uspA → universal stress protein
RA 3,638,755 A→G A88A (GCA→GCG yhiP → putative transport protein
RA 3,639,342 T→C L284P (CTC→CCC)  yhiP → putative transport protein
RA 3,648,042 T→C L59P (CTG→CCG)  arsC → arsenate reductase
RA 3,649,511 G→A E197E (GAG→GAA yhiS → hypothetical protein
RA 3,660,679 T→C L879P (CTG→CCG)  yhiV → putative transport system permease protein
RA 3,665,586 T→C A411A (GCA→GCG yhjA ← putative cytochrome C peroxidase
RA 3,666,629 T→C T64A (ACG→GCG)  yhjA ← putative cytochrome C peroxidase
RA 3,676,601 T→C T74A (ACC→GCC)  yhjH ← hypothetical protein
RA 3,678,204 G→A P456L (CCG→CTG)  yhjJ ← hypothetical protein
RA 3,679,306 T→C S89G (AGC→GGC)  yhjJ ← hypothetical protein
RA 3,683,091 A→G V42A (GTC→GCC)  yhjK ← hypothetical protein
RA 3,686,775 +T intergenic (‑23/+9) b3530 ← / ← yhjM putative oxidoreductase subunit/putative endoglucanase
RA 3,698,466 A→G N92S (AAC→AGC)  yhjV → putative transporter protein
RA 3,703,602 2 bp→GC intergenic (‑183/+124) dppB ← / ← dppA dipeptide transport system permease protein 1/dipeptide transport protein
RA 3,704,229 (T)5→4 coding (1106/1608 nt) dppA ← dipeptide transport protein
RA 3,704,865 T→C K157R (AAG→AGG)  dppA ← dipeptide transport protein
RA 3,705,464 T→C intergenic (‑130/+781) dppA ← / ← proK dipeptide transport protein/tRNA‑Pro
RA 3,714,436 2 bp→GC coding (261‑262/660 nt) yiaD → putative outer membrane protein
RA 3,724,581 T→C Q137R (CAG→CGG)  yiaA ← hypothetical protein
RA 3,725,180 G→A I70I (ATC→ATT yiaB ← hypothetical protein
RA 3,730,104 T→C L92P (CTG→CCG)  xylG → putative ATP‑binding protein of xylose transport system
RA 3,731,386 T→C V13A (GTA→GCA)  xylH → XylH
RA 3,734,264 2 bp→GC coding (542‑543/825 nt) bax ← putative ATP‑binding protein
RA 3,735,415 G→A R97H (CGC→CAC)  malS → alpha‑amylase
RA 3,737,956 2 bp→CG coding (623‑624/1254 nt) avtA → alanine‑alpha‑ketoisovalerate transaminase
RA 3,739,740 A→G M141T (ATG→ACG)  yiaJ ← putative regulator
RA 3,740,514 T→C R51R (CGT→CGC yiaK → putative dehydrogenase
RA 3,743,603 Δ1 bp coding (1171/1275 nt) yiaN → putative membrane protein
RA 3,744,796 G→A G28D (GGC→GAC)  lyxK → L‑xylulose kinase
RA 3,744,958 G→A G82E (GGA→GAA)  lyxK → L‑xylulose kinase
RA 3,745,316 C→T I201I (ATC→ATT lyxK → L‑xylulose kinase
RA 3,749,710 T→C L30P (CTT→CCT)  yiaU → putative transcriptional regulator LYSR‑type
RA 3,754,310 C→A R382M (AGG→ATG)  yiaY ← putative oxidoreductase
JC 3,754,317 +GCG coding (1138/1149 nt) yiaY ← putative oxidoreductase
RA 3,755,517 T→C intergenic (‑63/+127) yiaY ← / ← selB putative oxidoreductase/selenocysteinyl‑tRNA‑specific translation factor
RA 3,765,203 A→T Q119L (CAG→CTG)  yibJ → hypothetical protein
RA 3,765,234 G→A G129G (GGG→GGA yibJ → hypothetical protein
RA 3,765,916 A→G Y38C (TAT→TGT)  yibG → hypothetical protein
RA 3,772,157 T→C V36A (GTA→GCA)  mtlD → mannitol‑1‑phosphate dehydrogenase
RA 3,774,290 A→G intergenic (‑283/‑2) b4550 ← / → yibL hypothetical protein/hypothetical protein
RA 3,775,779 A→G I252V (ATT→GTT)  lldP → L‑lactate permease
RA 3,776,340 G→A G439S (GGT→AGT)  lldP → L‑lactate permease
RA 3,778,658 (C)5→4 intergenic (+14/‑184) lldD → / → yibK L‑lactate dehydrogenase/hypothetical protein
RA 3,785,382 G→A T306T (ACG→ACA b3613 → putative membrane protein
RA 3,786,097 A→G M124V (ATG→GTG)  b3614 → hypothetical protein
RA 3,786,415 A→G T230A (ACG→GCG)  b3614 → hypothetical protein
RA 3,787,263 C→G G149A (GGC→GCC)  yibD ← putative regulator
RA 3,791,583 T→C intergenic (‑258/‑31) htrL ← / → rfaD HtrL/ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase
RA 3,793,037 A→G Q161R (CAG→CGG)  rfaF → ADP‑heptose‑‑lps heptosyltransferase II
RA 3,795,233 T→C L220P (CTG→CCG)  rfaL → O‑antigen ligase
RA 3,795,982 A→G S320P (TCC→CCC)  rfaK ← putative hexose transferase
RA 3,800,657 T→C E10G (GAG→GGG)  rfaI ← UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase
RA 3,802,880 A→G M233T (ATG→ACG)  rfaP ← RfaP
RA 3,804,224 A→G T157T (ACT→ACC rfaG ← glucosyltransferase I
RA 3,804,546 T→C E50G (GAG→GGG)  rfaG ← glucosyltransferase I
RA 3,806,424 G→A T86T (ACG→ACA kdtA → 3‑deoxy‑D‑manno‑octulosonic‑acid transferase
RA 3,806,842 C→T R226C (CGC→TGC)  kdtA → 3‑deoxy‑D‑manno‑octulosonic‑acid transferase
RA 3,812,423 T→C R101R (CGT→CGC b3641 → putative transcriptional regulator
RA 3,814,809 A→G K169K (AAA→AAG yicC → putative alpha helix protein
RA 3,816,555 (G)5→6 coding (55/618 nt) b3646 → hypothetical protein
RA 3,817,156 T→C S550G (AGT→GGT)  yicF ← hypothetical protein
RA 3,819,792 A→G V20V (GTA→GTG rpoZ → RNA polymerase omega subunit
RA 3,822,652 T→C Y171H (TAC→CAC)  spoU → putative RNA methylase
RA 3,822,805 T→C W222R (TGG→CGG)  spoU → putative RNA methylase
RA 3,827,834 C→T G421G (GGC→GGT yicE → putative transport protein
RA 3,829,419 C→T R446C (CGC→TGC)  yicH → hypothetical protein
RA 3,837,057 G→A L188L (CTC→CTT nlpA ← lipoprotein‑28
RA 3,838,233 T→C T433T (ACA→ACG yicM ← putative transport protein
RA 3,838,693 A→G I280T (ATC→ACC)  yicM ← putative transport protein
RA 3,845,193 G→A T354T (ACC→ACT uhpC ← UhpC
RA 3,847,265 A→G W167R (TGG→CGG)  b3668 ← sensor histidine protein kinase
RA 3,847,491 T→C L91L (TTA→TTG b3668 ← sensor histidine protein kinase
RA 3,849,668 G→A G248G (GGC→GGT ilvB ← acetolactate synthase I large subunit
RA 3,850,058 G→A G118G (GGC→GGT ilvB ← acetolactate synthase I large subunit
RA 3,850,750 A→G intergenic (‑135/‑793) ivbL ← / → emrD ilvB operon leader peptide/2‑module integral membrane pump
RA 3,851,411 A→G intergenic (‑796/‑132) ivbL ← / → emrD ilvB operon leader peptide/2‑module integral membrane pump
RA 3,851,510 T→C intergenic (‑895/‑33) ivbL ← / → emrD ilvB operon leader peptide/2‑module integral membrane pump
RA 3,857,508 T→C E79G (GAA→GGA)  yidK ← putative cotransporter
RA 3,858,839 C→T intergenic (+36/+137) yidL → / ← glvG putative ARAC‑type regulatory protein/putative 6‑phospho‑beta‑glucosidase
RA 3,860,862 T→C A123A (GCA→GCG b4553 ← hypothetical protein
RA 3,862,488 G→A A471A (GCC→GCT yidE ← putative transport protein
RA 3,863,429 T→C M158V (ATG→GTG)  yidE ← putative transport protein
RA 3,868,477 A→G L294P (CTG→CCG)  b3691 ← D‑galactonate transport
RA 3,869,012 T→C I116V (ATT→GTT)  b3691 ← D‑galactonate transport
RA 3,870,631 Δ1 bp coding (610/1764 nt) dgoA ← 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase
RA 3,870,765 +G coding (476/1764 nt) dgoA ← 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase
RA 3,870,876 Δ1 bp coding (365/1764 nt) dgoA ← 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase
RA 3,872,450 +G coding (338/387 nt) yidW ← regulator protein for dgo operon
RA 3,873,493 T→C C124C (TGT→TGC yidX → putative replicase
RA 3,873,627 Δ1 bp coding (506/672 nt) yidX → putative replicase
RA 3,874,579 A→G M1T (ATG→ACG) † yidA ← hypothetical protein
RA 3,875,213 T→C intergenic (‑120/+120) b3698 ← / ← gyrB hypothetical protein/DNA gyrase subunit B
RA 3,876,595 G→C P385A (CCG→GCG)  gyrB ← DNA gyrase subunit B
RA 3,881,483 Δ1 bp intergenic (‑126/‑482) dnaA ← / → rpmH DnaA/50S ribosomal subunit protein L34
RA 3,883,067 T→C D121D (GAT→GAC yidC → 60 KD inner‑membrane protein
RA 3,886,722 G→A G122S (GGC→AGC)  b3708 → tryptophanase
RA 3,888,869 G→A A335A (GCG→GCA tnaB → low affinity tryptophan permease
RA 3,892,505 T→C G75G (GGT→GGC yieF → hypothetical protein
RA 3,893,993 A→G A82A (GCT→GCC yieG ← putative membrane/transport protein
RA 3,894,054 G→T A62D (GCC→GAC)  yieG ← putative membrane/transport protein
RA 3,896,324 +G coding (698/711 nt) b3718 ← putative isomerase
RA 3,897,445 T→C N265S (AAC→AGC)  yieL ← putative xylanase
RA 3,899,975 G→A A452V (GCA→GTA)  bglB ← phospho‑beta‑glucosidase B
RA 3,901,321 T→G A3A (GCA→GCC bglB ← phospho‑beta‑glucosidase B
RA 3,902,432 G→A P265L (CCG→CTG)  bglF ← PTS system beta‑glucosides‑specific enzyme IIABC component
RA 3,902,722 G→A G168G (GGC→GGT bglF ← PTS system beta‑glucosides‑specific enzyme IIABC component
RA 3,905,748 A→G S83P (TCT→CCT)  pstB ← ATP‑binding component of high‑affinity phosphate‑specific transport system
RA 3,911,767 A→G R354R (CGT→CGC glmU ← N‑acetyl glucosamine‑1‑phosphate uridyltransferase
RA 3,912,542 T→C D96G (GAT→GGT)  glmU ← N‑acetyl glucosamine‑1‑phosphate uridyltransferase
RA 3,913,076 (G)6→7 intergenic (‑248/+105) glmU ← / ← atpC N‑acetyl glucosamine‑1‑phosphate uridyltransferase/membrane‑bound ATP synthase, F1 sector, epsilon‑subunit
RA 3,915,043 G→C A284G (GCC→GGC)  atpG ← membrane‑bound ATP synthase, F1 sector, gamma‑subunit
RA 3,915,661 T→C Y78C (TAC→TGC)  atpG ← membrane‑bound ATP synthase, F1 sector, gamma‑subunit
RA 3,916,382 A→G V368V (GTT→GTC atpA ← membrane‑bound ATP synthase, F1 sector, alpha‑subunit
RA 3,917,055 T→C Q144R (CAG→CGG)  atpA ← membrane‑bound ATP synthase, F1 sector, alpha‑subunit
RA 3,918,274 T→C K81K (AAA→AAG atpF ← membrane‑bound ATP synthase, F0 sector, subunit b
RA 3,923,857 T→C Q76R (CAG→CGG)  mioC ← MioC
RA 3,925,742 T→C A320A (GCT→GCC asnA → asparagine synthetase A
RA 3,927,062 +G coding (2/1284 nt)
coding (169/183 nt)
yieM ←
b4564 ←
hypothetical protein
hypothetical protein
RA 3,929,460 T→C M173T (ATG→ACG)  kup → low affinity potassium transport system
RA 3,930,457 Δ1 bp coding (1515/1560 nt) kup → low affinity potassium transport system
RA 3,930,568 +G intergenic (+66/‑373) kup → / → rbsD low affinity potassium transport system/RbsD
RA 3,930,677 +G intergenic (+175/‑264) kup → / → rbsD low affinity potassium transport system/RbsD
RA 3,931,938 T→C S179P (TCC→CCC)  rbsA → ATP‑binding component of D‑ribose high‑affinity transport system
RA 3,934,276 C→T H125Y (CAC→TAC)  rbsB → D‑ribose periplasmic binding protein
RA 3,934,461 A→G P186P (CCA→CCG rbsB → D‑ribose periplasmic binding protein
RA 3,934,526 T→C V208A (GTT→GCT)  rbsB → D‑ribose periplasmic binding protein
RA 3,937,523 A→G L239P (CTG→CCG)  yieO ← putative transport protein
RA 3,938,374 C→T D145N (GAC→AAC)  yiePs ← hypothetical protein
JC 3,938,587 +TGC coding (220/546 nt) yiePs ← hypothetical protein
RA 3,938,723 C→T R28R (CGG→CGA yiePs ← hypothetical protein
RA 3,941,531 T→C noncoding (206/2906 nt) rrlC → 23S ribosomal RNA
RA 3,941,734 Δ1 bp noncoding (409/2906 nt) rrlC → 23S ribosomal RNA
RA 3,944,244 C→A intergenic (+13/‑80) rrlC → / → rrfC 23S ribosomal RNA/5S ribosomal RNA
RA 3,944,676 2 bp→GC intergenic (+20/+75) trpT → / ← yifDA tRNA‑Trp/transcription regulator
RA 3,945,351 +C coding (1/600 nt)
coding (240/240 nt)
yifDA ←
yifDA ←
transcription regulator
transcription regulator
RA 3,945,896 T→C V63A (GTA→GCA)  yifE → hypothetical protein
RA 3,948,221 A→G A13A (GCA→GCG ilvG → acetolactate synthase II large subunit
RA 3,950,224 A→G I40V (ATC→GTC)  ilvE → branched‑chain amino‑acid aminotransferase
RA 3,950,400 T→C R98R (CGT→CGC ilvE → branched‑chain amino‑acid aminotransferase
RA 3,950,557 2 bp→GC coding (451‑452/930 nt) ilvE → branched‑chain amino‑acid aminotransferase
RA 3,951,166 +C coding (35/1818 nt) ilvD → dihydroxyacid dehydratase
RA 3,951,168 +G coding (37/1818 nt) ilvD → dihydroxyacid dehydratase
RA 3,953,910 A→G N320S (AAC→AGC)  ilvA → threonine deaminase
RA 3,957,092 +CC intergenic (+26/+58) ilvC → / ← ppiC ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C
RA 3,957,124 +G intergenic (+58/+26) ilvC → / ← ppiC ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C
RA 3,957,548 1 bp→GG intergenic (‑117/‑744) ppiC ← / → rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase
RA 3,957,551 +T intergenic (‑120/‑741) ppiC ← / → rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase
RA 3,957,560 +C intergenic (‑129/‑732) ppiC ← / → rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase
RA 3,958,261 T→C intergenic (‑830/‑31) ppiC ← / → rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase
RA 3,958,877 2 bp→CG coding (586‑587/2022 nt) rep → rep helicase
RA 3,960,578 2 bp→CG coding (1266‑1267/1485 nt) gppA ← guanosine pentaphosphatase
RA 3,961,588 C→G R86T (AGG→ACG)  gppA ← guanosine pentaphosphatase
RA 3,961,605 G→A R80R (CGC→CGT gppA ← guanosine pentaphosphatase
RA 3,961,966 A→G intergenic (‑122/+14) gppA ← / ← rhlB guanosine pentaphosphatase/putative ATP‑dependent RNA helicase
RA 3,962,662 A→G M195T (ATG→ACG)  rhlB ← putative ATP‑dependent RNA helicase
RA 3,964,041 A→G T4A (ACC→GCC)  rho → transcription termination factor Rho
RA 3,964,245 T→C Y72H (TAC→CAC)  rho → transcription termination factor Rho
RA 3,965,229 A→G I400V (ATT→GTT)  rho → transcription termination factor Rho
RA 3,966,992 A→G E117G (GAG→GGG)  wzzE → putative transport protein
RA 3,967,307 A→G D222G (GAC→GGC)  wzzE → putative transport protein
JC 3,968,317 +CGT coding (612/1170 nt) wecB → UDP‑N‑acetyl glucosamine ‑2‑epimerase
RA 3,968,566 A→G L287L (TTA→TTG wecB → UDP‑N‑acetyl glucosamine ‑2‑epimerase
RA 3,969,103 2 bp→GC coding (232‑233/1263 nt) wecC → UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase
RA 3,971,075 2 bp→GC coding (942‑943/1068 nt) rffG → dTDP‑glucose 4,6‑dehydratase
RA 3,972,637 2 bp→GC coding (430‑431/546 nt) wecD → hypothetical protein
RA 3,972,641 G→A R145H (CGC→CAC)  wecD → hypothetical protein
RA 3,973,216 C→T A153A (GCC→GCT wecE → putative regulator
RA 3,974,008 C→T A40V (GCG→GTG)  wzxE → putative cytochrome
RA 3,975,313 Δ1 bp intergenic (+173/‑901) wzxE → / → wecF putative cytochrome/TDP‑Fuc4NAc:lipidII transferase
RA 3,978,570 (G)6→7 coding (71/1386 nt) yifK → putative amino acid/amine transport protein
RA 3,978,702 C→T S68F (TCC→TTC)  yifK → putative amino acid/amine transport protein
RA 3,979,535 +G coding (1036/1386 nt) yifK → putative amino acid/amine transport protein
RA 3,979,546 Δ1 bp coding (1047/1386 nt) yifK → putative amino acid/amine transport protein
RA 3,980,297 (C)8→9 noncoding (79/87 nt) leuT → tRNA‑Leu
RA 3,980,918 2 bp→CG coding (348‑349/1236 nt) aslB → putative arylsulfatase regulator
RA 3,980,954 A→G L128L (TTA→TTG aslB → putative arylsulfatase regulator
RA 3,985,741 T→C V313V (GTA→GTG hemX ← uroporphyrinogen III methylase
RA 3,987,586 2 bp→GC coding (814‑815/963 nt) hemC ← porphobilinogen deaminase
RA 3,987,807 A→G I198I (ATT→ATC hemC ← porphobilinogen deaminase
RA 3,987,822 2 bp→CG coding (578‑579/963 nt) hemC ← porphobilinogen deaminase
RA 3,989,898 A→G Q378R (CAG→CGG)  cyaA → adenylate cyclase
RA 3,991,539 T→C N45S (AAT→AGT) 
I26T (ATT→ACT) 
cyaY ←
b3808 →
hypothetical protein
hypothetical protein
RA 3,992,894 A→G T175A (ACG→GCG)  dapF → diaminopimelate epimerase
RA 3,998,290 +G coding (379/486 nt) b4566 ← hypothetical protein
RA 4,001,421 2 bp→GC coding (381‑382/903 nt) rarD ← hypothetical protein
RA 4,001,486 2 bp→GC coding (316‑317/903 nt) rarD ← hypothetical protein
RA 4,001,717 +C coding (86/903 nt) rarD ← hypothetical protein
RA 4,004,812 T→C R448R (CGT→CGC recQ → ATP‑dependent DNA helicase
RA 4,004,979 +G coding (1511/1833 nt) recQ → ATP‑dependent DNA helicase
RA 4,004,984 +CG coding (1516/1833 nt) recQ → ATP‑dependent DNA helicase
RA 4,005,219 T→C V584A (GTT→GCT)  recQ → ATP‑dependent DNA helicase
RA 4,005,601 +C coding (237/282 nt) b4568 → hypothetical protein
RA 4,006,483 +C coding (183/207 nt) b4554 ← hypothetical protein
RA 4,007,718 2 bp→CG coding (943‑944/1023 nt) pldB → lysophospholipase L(2)
RA 4,007,907 +GG intergenic (+109/‑11) pldB → / → b4555 lysophospholipase L(2)/hypothetical protein
RA 4,008,375 +A coding (458/516 nt) b4555 → hypothetical protein
RA 4,008,391 +C coding (474/516 nt) b4555 → hypothetical protein
RA 4,008,393 C→G A159G (GCT→GGT)  b4555 → hypothetical protein
RA 4,008,400 +GAAA coding (483/516 nt) b4555 → hypothetical protein
RA 4,008,404 +G coding (487/516 nt) b4555 → hypothetical protein
RA 4,008,411 +C coding (494/516 nt) b4555 → hypothetical protein
RA 4,008,421 +T coding (504/516 nt) b4555 → hypothetical protein
RA 4,008,429 +TG coding (512/516 nt) b4555 → hypothetical protein
RA 4,008,469 +G intergenic (+36/‑197) b4555 → / → yigM hypothetical protein/hypothetical protein
RA 4,008,473 +G intergenic (+40/‑193) b4555 → / → yigM hypothetical protein/hypothetical protein
RA 4,008,491 2 bp→CG intergenic (+58/‑174) b4555 → / → yigM hypothetical protein/hypothetical protein
RA 4,008,525 +G intergenic (+92/‑141) b4555 → / → yigM hypothetical protein/hypothetical protein
RA 4,008,990 C→T R109C (CGT→TGT)  yigM → hypothetical protein
RA 4,011,430 A→G H263R (CAT→CGT)  metE → tetrahydropteroyltriglutamate methyltransferase
RA 4,011,749 A→G A369A (GCA→GCG metE → tetrahydropteroyltriglutamate methyltransferase
RA 4,013,176 C→G G182R (GGA→CGA)  ysgA ← hypothetical protein
RA 4,013,177 +C coding (543/999 nt) ysgA ← hypothetical protein
RA 4,013,717 +G coding (3/999 nt) ysgA ← hypothetical protein
RA 4,013,772 +C intergenic (‑53/‑246) ysgA ← / → udp hypothetical protein/uridine phosphorylase
RA 4,016,743 C→T P101L (CCC→CTC)  ubiE → UbiE
RA 4,017,557 A→G E116G (GAG→GGG)  yigP → hypothetical protein
RA 4,019,057 A→G V415V (GTA→GTG yigR → hypothetical protein
RA 4,019,857 C→T intergenic (+56/‑28) b3836 → / → b3838 hypothetical protein/hypothetical protein
RA 4,019,860 Δ2 bp intergenic (+59/‑24) b3836 → / → b3838 hypothetical protein/hypothetical protein
RA 4,021,493 C→T A121A (GCC→GCT
A117A (GCC→GCT
tatD →
b4556 →
Mg‑dependent DNase
hypothetical protein
RA 4,021,684 Δ1 bp coding (542/609 nt)|coding (1/243 nt) b4556 →
tatD →
hypothetical protein
Mg‑dependent DNase
RA 4,023,531 T→C H318H (CAT→CAC yigC → putative oxidoreductase
RA 4,026,252 2 bp→GC coding (110‑111/1164 nt) fadA ← thiolase I
RA 4,031,984 +C coding (1250/1299 nt) trkH → TrkH
RA 4,032,327 A→G Q44R (CAG→CGG)  hemG → protoporphyrin oxidase
RA 4,032,390 C→T A65V (GCG→GTG)  hemG → protoporphyrin oxidase
RA 4,035,428 A→G noncoding (330/2905 nt) rrlA → 23S ribosomal RNA
RA 4,039,960 Δ1 bp intergenic (+42/‑36) yihD → / → yihE hypothetical protein/hypothetical protein
RA 4,041,654 G→A intergenic (+29/‑125) dsbA → / → b3861 protein disulfide isomerase I/putative GTP‑binding protein
RA 4,041,671 (T)6→7 intergenic (+46/‑108) dsbA → / → b3861 protein disulfide isomerase I/putative GTP‑binding protein
RA 4,041,927 A→G Y50C (TAC→TGC)  b3861 → putative GTP‑binding protein
RA 4,043,403 A→G H260H (CAT→CAC yihG ← putative endonuclease
RA 4,043,629 A→G I185T (ATT→ACT)  yihG ← putative endonuclease
RA 4,049,140 A→G I72V (ATT→GTT)  yihI → hypothetical protein
RA 4,049,149 G→A G75S (GGC→AGC)  yihI → hypothetical protein
RA 4,051,144 Δ1 bp intergenic (+146/+305) hemN → / ← glnG O2‑independent coproporphyrinogen III oxidase/GlnG
RA 4,051,170 +C intergenic (+172/+279) hemN → / ← glnG O2‑independent coproporphyrinogen III oxidase/GlnG
RA 4,052,844 T→C I5M (ATA→ATG glnG ← GlnG
RA 4,056,373 A→G K129K (AAA→AAG yihK → putative GTP‑binding factor
RA 4,057,759 +C coding (1773/1776 nt) yihK → putative GTP‑binding factor
RA 4,057,859 (T)9→8 intergenic (+97/‑167) yihK → / → yihL putative GTP‑binding factor/putative transcriptional regulator
RA 4,060,112 A→G Y96C (TAT→TGT)  yihN → putative resistance protein
RA 4,061,961 Δ1 bp coding (1386/1458 nt) b3876 ← putative permease
RA 4,067,548 T→C H137R (CAC→CGC)  b3879 ← putative aldose‑1‑epimerase
RA 4,071,901 G→A A197T (GCC→ACC)  yihV → putative kinase
RA 4,074,827 A→G Q78R (CAG→CGG)  yihZ → hypothetical protein
RA 4,076,069 T→C intergenic (+51/‑775) yiiD → / → yiiE putative acetyltransferase/hypothetical protein
RA 4,080,195 A→G C49R (TGT→CGT)  fdoH ← formate dehydrogenase‑O, iron‑sulfur subunit
RA 4,080,532 A→G R957R (CGT→CGC fdoG ← formate dehydrogenase‑O, major subunit
RA 4,081,716 A→G F563L (TTC→CTC)  fdoG ← formate dehydrogenase‑O, major subunit
RA 4,083,471 A→G intergenic (‑69/‑125) fdoG ← / → fdhD formate dehydrogenase‑O, major subunit/affects formate dehydrogenase‑N
RA 4,085,675 Δ1 bp intergenic (+38/+13) yiiG → / ← frvR hypothetical protein/putative frv operon regulatory protein
RA 4,085,695 T→C K581R (AAG→AGG)  frvR ← putative frv operon regulatory protein
RA 4,091,351 C→T G168D (GGC→GAC)  rhaD ← rhamnulose‑phosphate aldolase
MC JC 4,091,572 3461 bp→29 bp [rhaD]rhaB [rhaD], rhaA, rhaB
RA 4,095,111 G→A intergenic (‑82/‑206) rhaB ← / → rhaS rhamnulokinase/RhaS
RA 4,097,623 T→C M162V (ATG→GTG)  rhaT ← RhaT
RA 4,099,309 (G)7→8 coding (48/993 nt) kdgT → 2‑keto‑3‑deoxy‑D‑gluconate transport system
RA 4,103,519 +T intergenic (‑268/‑530) cpxR ← / → yiiP transcriptional regulator in 2‑component system/putative transport system permease protein
RA 4,103,641 T→C intergenic (‑390/‑408) cpxR ← / → yiiP transcriptional regulator in 2‑component system/putative transport system permease protein
RA 4,106,773 A→G V120V (GTA→GTG sbp → periplasmic sulfate‑binding protein
RA 4,108,133 A→G G208G (GGA→GGG cdh → CDP‑diacylglycerol phosphotidylhydrolase
RA 4,112,113 T→C intergenic (‑61/+36) fpr ← / ← glpX ferredoxin‑NADP reductase/GlpX
RA 4,113,690 C→T G371G (GGG→GGA glpK ← glycerol kinase
RA 4,116,372 T→C intergenic (+32/+53) yiiU → / ← menG hypothetical protein/MenG
RA 4,120,133 T→C T263A (ACG→GCG)  ftsN ← essential cell division protein
RA 4,120,575 T→C T115T (ACA→ACG ftsN ← essential cell division protein
RA 4,128,011 C→T A199A (GCC→GCT metL → aspartokinase II
RA 4,128,355 A→G H314R (CAC→CGC)  metL → aspartokinase II
RA 4,128,799 T→C V462A (GTA→GCA)  metL → aspartokinase II
RA 4,130,739 A→G T182A (ACT→GCT)  metF → 5,10‑methylenetetrahydrofolate reductase
RA 4,134,509 A→G E274E (GAA→GAG b3943 → hypothetical protein
RA 4,137,208 A→G T27T (ACT→ACC talC ← putative transaldolase
RA 4,137,219 C→T G24R (GGG→AGG)  talC ← putative transaldolase
RA 4,139,669 +C coding (233/330 nt)
coding (132/159 nt)
yijI →
b4558 ←
hypothetical protein
hypothetical protein
RA 4,140,312 G→A M68I (ATG→ATA frwC → PTS system fructose‑like enzyme IIC component
RA 4,149,200 G→A A493V (GCG→GTG)  ppc ← phosphoenolpyruvate carboxylase
RA 4,149,444 A→G Y412H (TAC→CAC)  ppc ← phosphoenolpyruvate carboxylase
RA 4,152,979 G→A G134S (GGT→AGT)  argC → N‑acetyl‑gamma‑glutamylphosphate reductase
RA 4,158,827 G→T G61V (GGC→GTC)  yijC → hypothetical protein
RA 4,158,977 T→C V111A (GTC→GCC)  yijC → hypothetical protein
RA 4,161,702 C→G A162G (GCA→GGA)  btuB → BtuB
RA 4,173,376 A→G noncoding (44/76 nt) thrT → tRNA‑Thr
RA 4,175,853 G→A V178I (GTT→ATT)  nusG → NusG
RA 4,175,949 +G intergenic (+82/‑76) nusG → / → rplK NusG/50S ribosomal subunit protein L11
RA 4,178,668 A→G intergenic (+165/‑155) rplL → / → rpoB 50S ribosomal subunit protein L7/L12/RNA polymerase beta subunit
RA 4,185,057 C→T D710D (GAC→GAT rpoC → RNA polymerase beta prime subunit
RA 4,185,074 A→G Q716R (CAG→CGG)  rpoC → RNA polymerase beta prime subunit
RA 4,194,577 2 bp→GC coding (97‑98/774 nt) yjaD → hypothetical protein
RA 4,198,118 A→G D87G (GAC→GGC)  hupA → DNA‑binding protein HU‑alpha
RA 4,201,958 G→A W354* (TGG→TAG)  hydG → HydG
RA 4,203,198 Δ1 bp coding (312/1290 nt) purD ← phosphoribosylglycinamide synthetase
RA 4,203,421 A→G V30A (GTT→GCT)  purD ← phosphoribosylglycinamide synthetase
RA 4,205,438 T→C intergenic (‑328/‑287) purH ← / → rrsE phosphoribosylaminoimidazolecarboxamideformyltra nsferase/16S ribosomal RNA
RA 4,211,571 A→G R44R (CGT→CGC yjaB ← hypothetical protein
RA 4,215,052 A→G E122G (GAG→GGG)  aceA → isocitrate lyase
RA 4,216,494 A→G Y107C (TAC→TGC)  aceK → isocitrate dehydrogenase kinase/phosphatase
RA 4,219,434 A→G A211A (GCT→GCC arp ← Arp
RA 4,225,050 A→G E1215G (GAG→GGG)  metH → B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase
RA 4,225,139 T→C intergenic (+49/‑171) metH → / → yjbB B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase/putative alpha helix protein
RA 4,227,795 A→G intergenic (‑74/‑138) pepE ← / → yjbC peptidase E/hypothetical protein
RA 4,236,786 A→G Y525C (TAC→TGC)  yjbH → hypothetical protein
RA 4,244,543 T→C F61L (TTC→CTC)  malK → ATP‑binding component of transport system for maltose
RA 4,246,188 A→G E213E (GAA→GAG lamB → phage lambda receptor protein
RA 4,250,949 A→G I119V (ATT→GTT)  ubiA → 4‑hydroxybenzoate‑octaprenyltransferase
RA 4,251,782 A→G V755A (GTG→GCG)  plsB ← glycerol‑3‑phosphate acyltransferase
RA 4,259,162 A→G intergenic (+277/‑86) yjbM → / → yjbN hypothetical protein/hypothetical protein
RA 4,261,143 T→C E223G (GAA→GGA)  qor ← quinone oxidoreductase
RA 4,265,202 A→G L170L (TTA→TTG tyrB → tyrosine aminotransferase
RA 4,270,212 A→G R413R (CGT→CGC uvrA ← excision nuclease subunit A
RA 4,270,235 A→G C406R (TGC→CGC)  uvrA ← excision nuclease subunit A
RA 4,284,295 A→G V219A (GTA→GCA)  acs ← acetyl‑CoA synthetase
RA 4,293,960 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate‑aspartate symport protein/hypothetical protein
RA 4,295,417 G→A P510L (CCG→CTG)  fdhF ← selenopolypeptide subunit of formate dehydrogenase H
RA 4,297,280 T→C T444A (ACC→GCC)  yjcP ← hypothetical protein
RA 4,298,670 A→G L616S (TTG→TCG)  yjcQ ← hypothetical protein
RA 4,302,652 A→G Y513H (TAT→CAT)  yjcS ← hypothetical protein
RA 4,307,603 T→C E319E (GAA→GAG yjcW ← putative ATP‑binding component of a transport system
RA 4,307,748 A→G V271A (GTC→GCC)  yjcW ← putative ATP‑binding component of a transport system
RA 4,311,496 +C coding (301/408 nt) phnQ ← hypothetical protein
RA 4,315,907 +A coding (436/759 nt) phnK ← ATP‑binding component of phosphonate transport
RA 4,316,203 T→A Q47L (CAG→CTG)  phnK ← ATP‑binding component of phosphonate transport
RA 4,328,807 A→G Q243R (CAG→CGG)  proP → proline permease II
RA 4,333,152 A→G L16P (CTA→CCA)  yjdB ← hypothetical protein
RA 4,348,017 C→T A408A (GCG→GCA yjdH ← putative 2‑component sensor protein
RA 4,348,109 C→T A378T (GCC→ACC)  yjdH ← putative 2‑component sensor protein
RA 4,356,775 C→T A279T (GCC→ACC)  cadB ← transport of lysine/cadaverine
RA 4,356,994 C→T A206T (GCA→ACA)  cadB ← transport of lysine/cadaverine
RA 4,363,427 T→C T309A (ACT→GCT)  dcuA ← anaerobic dicarboxylate transport
RA 4,366,832 T→C M387V (ATG→GTG)  yjeH ← putative transport
RA 4,368,258 A→G intergenic (‑268/‑8) yjeH ← / → mopB putative transport/GroES
RA 4,369,183 A→G Q194R (CAG→CGG)  mopA → GroEL
RA 4,369,637 T→C R345R (CGT→CGC mopA → GroEL
RA 4,370,182 A→G N527S (AAC→AGC)  mopA → GroEL
RA 4,372,457 A→G V260A (GTG→GCG)  yjeK ← hypothetical protein
RA 4,381,510 T→C Y46H (TAC→CAC)  yjeM → putative transport
RA 4,382,443 A→G T357A (ACG→GCG)  yjeM → putative transport
RA 4,385,717 T→C N411S (AAC→AGC)  yjeP ← putative periplasmic binding protein
RA 4,388,932 A→G A52A (GCT→GCC b4161 ← hypothetical protein
RA 4,392,958 G→A G439S (GGC→AGC)  yjeF → hypothetical protein
RA 4,394,260 C→T G206G (GGC→GGT amiB → N‑acetylmuramoyl‑l‑alanine amidase II
RA 4,395,292 T→A S101R (AGT→AGA mutL → MutL
RA 4,406,298 A→G Q689Q (CAA→CAG b4179 → hypothetical protein
RA 4,408,560 G→A A144T (GCC→ACC)  yjfJ → hypothetical protein
RA 4,414,467 A→G intergenic (‑119/‑63) b4189 ← / → yjfP hypothetical protein/hypothetical protein
RA 4,422,211 T→C A53A (GCA→GCG yjfY ← hypothetical protein
RA 4,427,095 A→G T195A (ACC→GCC)  b4207 → FKBP‑type 22KD peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA 4,428,092 A→G G217G (GGA→GGG cycA → transport of D‑alanine, D‑serine, and glycine
RA 4,431,142 T→C H154R (CAC→CGC)  ytfG ← putative oxidoreductase
RA 4,431,925 A→G I79V (ATC→GTC)  b4212 → hypothetical protein
RA 4,435,684 +A coding (400/501 nt) ytfI → hypothetical protein
RA 4,435,689 C→T D135D (GAC→GAT ytfI → hypothetical protein
RA 4,437,861 A→G V311A (GTG→GCG)  ytfL ← putative transport protein
RA 4,440,519 A→G E187E (GAA→GAG ytfM → hypothetical protein
RA 4,441,383 T→C S475S (AGT→AGC ytfM → hypothetical protein
RA 4,444,690 T→C V1001A (GTA→GCA)  ytfN → hypothetical protein
RA 4,448,541 +C intergenic (+46/‑92) ytfQ → / → ytfR putative LACI‑type transcriptional regulator/YtfR
RA 4,448,543 +C intergenic (+48/‑90) ytfQ → / → ytfR putative LACI‑type transcriptional regulator/YtfR
RA 4,449,738 +G coding (1106/1254 nt) ytfR → YtfR
RA 4,450,334 G→A A64T (GCT→ACT)  ytfT → putative transport system permease protein
RA 4,472,408 A→G intergenic (+117/‑28) b4251 → / → b4252 hypothetical protein/hypothetical protein
RA 4,473,339 A→G E122G (GAA→GGA)  yjgL → hypothetical protein
RA 4,474,826 +A intergenic (+1/+44) yjgL → / ← argI hypothetical protein/ornithine carbamoyltransferase 1
MC JC 4,474,849 20 bp→30 bp intergenic (+24/+2) yjgL → / ← argI hypothetical protein/ornithine carbamoyltransferase 1
RA 4,474,882 C→T T331T (ACG→ACA argI ← ornithine carbamoyltransferase 1
RA 4,475,662 A→G G71G (GGT→GGC argI ← ornithine carbamoyltransferase 1
RA 4,476,619 A→G V91A (GTG→GCG)  b4256 ← hypothetical protein
RA 4,477,041 Δ1 bp intergenic (‑151/‑269) b4256 ← / → yjgN hypothetical protein/hypothetical protein
RA 4,477,068 +C intergenic (‑178/‑242) b4256 ← / → yjgN hypothetical protein/hypothetical protein
RA 4,477,281 Δ1 bp intergenic (‑391/‑29) b4256 ← / → yjgN hypothetical protein/hypothetical protein
RA 4,477,321 Δ1 bp coding (12/1182 nt) yjgN → hypothetical protein
RA 4,478,503 (A)7→6 intergenic (+12/+47) yjgN → / ← valS hypothetical protein/valine tRNA synthetase
RA 4,478,511 Δ1 bp intergenic (+20/+39) yjgN → / ← valS hypothetical protein/valine tRNA synthetase
RA 4,478,527 Δ1 bp intergenic (+36/+23) yjgN → / ← valS hypothetical protein/valine tRNA synthetase
RA 4,483,536 T→C intergenic (‑17/‑250) pepA ← / → yjgP aminopeptidase A/I/hypothetical protein
RA 4,484,261 T→C L159P (CTG→CCG)  yjgP → hypothetical protein
RA 4,484,843 T→C V353A (GTC→GCC)  yjgP → hypothetical protein
RA 4,484,849 G→A R355H (CGC→CAC)  yjgP → hypothetical protein
RA 4,502,304 (T)5→6 coding (679/1218 nt) b4279 → putative transport protein
RA 4,511,365 A→G L173P (CTT→CCT)  fecB ← FecB
RA 4,511,632 T→C Q84R (CAG→CGG)  fecB ← FecB
RA 4,519,062 A→G I176T (ATA→ACA)  yjhF ← putative transport system permease
RA 4,520,082 A→G H527H (CAT→CAC yjhG ← putative dehydratase
RA 4,542,643 Δ1 bp intergenic (+46/‑22) b4316 → / → fimD Pil/FimD
RA 4,544,170 T→C I502I (ATT→ATC fimD → FimD
RA 4,544,274 T→C L537P (CTC→CCC)  fimD → FimD
RA 4,549,566 A→G D121G (GAC→GGC)  uxuA → mannonate hydrolase
RA 4,551,614 T→C L382P (CTG→CCG)  uxuB → D‑mannonate oxidoreductase
RA 4,555,020 A→G M280T (ATG→ACG)  yjiE ← putative transcriptional regulator LYSR‑type
RA 4,562,600 T→C T274A (ACC→GCC)  yjiM ← hypothetical protein
RA 4,572,726 T→C P341P (CCT→CCC yjiU → hypothetical protein
RA 4,573,190 Δ1 bp coding (1487/1542 nt) yjiU → hypothetical protein
RA 4,575,878 A→G Y344H (TAT→CAT)  mcrB ← McrB
RA 4,583,050 G→A Q446* (CAA→TAA)  hsdR ← endonuclease R
RA 4,593,254 2 bp→GC coding (59‑60/807 nt) yjjM ← hypothetical protein
RA 4,593,336 +G intergenic (‑23/‑208) yjjM ← / → yjjN hypothetical protein/putative oxidoreductase
RA 4,600,078 C→T W135* (TGG→TAG)  yjjP ← putative structural protein
RA 4,601,614 (A)7→6 coding (569/726 nt) yjjQ → putative regulator
RA 4,603,785 A→G noncoding (71/87 nt) leuP ← tRNA‑Leu
RA 4,604,832 A→G R146R (CGT→CGC yjjT ← hypothetical protein
RA 4,606,400 G→A Q62Q (CAG→CAA yjjG → putative phosphatase
RA 4,608,595 2 bp→GC intergenic (+23/‑369) prfC → / → osmY peptide chain release factor RF‑3/OsmY
RA 4,614,238 G→T L133I (CTA→ATA)  yjjI ← hypothetical protein
RA 4,619,453 T→G V39G (GTG→GGG)  yjjJ → hypothetical protein
RA 4,621,644 A→G W15R (TGG→CGG)  lplA ← lipoate‑protein ligase A

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 363580 365526 1947 66 [63] [1] 276 lacZ beta‑D‑galactosidase
* * ÷ NC_000913 2067009–2068230 2068230 1–1222 64 [60] [63] 66 [b1995]–[yi213] [b1995],[yi223],[yi213]
* * ÷ NC_000913 2518996 2519104–2519071 76–109 65 [61] [63] 64 [valU]–[valX] [valU],[valX]
* * ÷ NC_000913 3421337–3421870 3422235–3421880 11–899 65 [62] [63] 65 [rrfD]–[rrlD] [rrfD],[rrlD]
* * ÷ NC_000913 3943596–3943706 3943801–3943771 66–206 64 [61] [63] 64 rrlC 23S ribosomal RNA

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 269765 =NA (NA)188 (1.040) 111/184 0.1 98.4% coding (300/405 nt) yi91a hypothetical protein
?NC_000913 = 370983 3 (0.020)coding (536/882 nt) mhpC 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase
* ? NC_000913 = 279335NA (NA)203 (1.120) 118/184 0.1 98.5% coding (252/339 nt) b4505 hypothetical protein
?NC_000913 370982 = 3 (0.020)coding (535/882 nt) mhpC 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase
* ? NC_000913 365527 =1 (0.010)260 (1.480) 129/178 0.0 72.5% coding (3/3075 nt) lacZ beta‑D‑galactosidase
?NC_000913 4589230 = 196 (1.120)coding (4/1656 nt) tsr methyl‑accepting chemotaxis protein I
* ? NC_000913 1207013 =61 (0.340)91 (0.610) 64/152 1.2 59.6% coding (290/630 nt) ycfK hypothetical protein
?NC_000913 1208842 = 73 (0.490)coding (40/540 nt) b1157 putative tail fiber protein
* ? NC_000913 = 120702861 (0.340)71 (0.470) 50/152 2.3 53.5% coding (305/630 nt) ycfK hypothetical protein
?NC_000913 = 1208825 73 (0.490)coding (57/540 nt) b1157 putative tail fiber protein
* ? NC_000913 3192559 =175 (0.960)163 (1.140)
+ATGTGTTAATGAAACCTTC
75/146 0.5 55.7% intergenic (+18/+402) b3051/b3052 putative membrane protein/putative kinase
?NC_000913 = 3192916 153 (0.840)intergenic (+375/+45) b3051/b3052 putative membrane protein/putative kinase
* ? NC_000913 3349258 =15 (0.080)201 (1.110) 110/184 0.1 93.1% coding (1403/2331 nt) arcB aerobic respiration sensor‑response protein
?NC_000913 = 3349263 NA (NA)coding (1398/2331 nt) arcB aerobic respiration sensor‑response protein