mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,292,259 | 0 | T | C | 61.5% | 17.0 / 30.2 | 27 | intergenic (+100/+44) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| * | REL606 | 3,691,844 | 0 | T | G | 41.9% | 57.9 / 15.9 | 43 | N226T (AAC→ACC) | yiaY | predicted Fe‑containing alcohol dehydrogenase |
| * | REL606 | 2,631,772 | 0 | A | C | 39.5% | 64.3 / 19.2 | 43 | intergenic (‑267/‑141) | rpoE/nadB | RNA polymerase, sigma 24 (sigma E) factor/L‑aspartate oxidase |
| * | REL606 | 3,492,082 | 0 | T | G | 38.3% | 77.2 / 16.1 | 47 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 4,393,061 | 0 | T | G | 33.3% | 106.1 / 35.9 | 67 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 2,296,329 | 0 | A | C | 28.1% | 148.7 / 22.0 | 64 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,484,105 | 0 | A | G | 26.3% | 71.7 / 11.2 | 38 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 4,195,874 | 0 | A | C | 23.5% | 268.2 / 18.1 | 103 | T318P (ACC→CCC) | aceB | malate synthase |
| * | REL606 | 3,733,719 | 0 | C | G | 21.4% | 111.8 / 13.8 | 43 | G63G (GGC→GGG) | gumD | ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding |
| * | REL606 | 1,875,483 | 0 | G | C | 21.2% | 212.3 / 48.0 | 80 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| Marginal new junction evidence (lowest skew 10 of 195 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2039480 | 116 (1.890) | 18 (0.330) | 12/134 | 3.6 | 18.1% | coding (215/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | = 2039680 | 60 (1.100) | coding (15/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | 3737856 = | 77 (1.260) | 16 (0.290) | 10/136 | 4.3 | 16.3% | intergenic (‑30/+16) | waaL/waaV | Lipid A‑core, surface polymer ligase/putative beta1,3‑glucosyltransferase |
| ? | REL606 | 3738065 = | 95 (1.710) | coding (791/984 nt) | waaV | putative beta1,3‑glucosyltransferase | |||||
| * | ? | REL606 | 2041277 = | 56 (0.910) | 16 (0.290) | 10/136 | 4.3 | 15.9% | coding (107/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041470 = | 118 (2.130) | coding (1351/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2040012 = | 61 (1.000) | 12 (0.220) | 9/132 | 4.5 | 15.4% | coding (117/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040259 = | 78 (1.450) | intergenic (‑131/+12) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| * | ? | REL606 | = 2039999 | 65 (1.060) | 10 (0.180) | 9/138 | 4.7 | 15.2% | coding (130/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | = 2040151 | 52 (0.920) | intergenic (‑23/+120) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| * | ? | REL606 | = 3582336 | 76 (1.240) | 14 (0.250) | 9/140 | 4.8 | 16.7% | coding (356/1224 nt) | yhiS | hypothetical protein |
| ? | REL606 | = 3582485 | 69 (1.210) | coding (505/1224 nt) | yhiS | hypothetical protein | |||||
| * | ? | REL606 | = 3021053 | 89 (1.450) | 11 (0.200) | 8/132 | 4.8 | 12.8% | coding (431/933 nt) | ECB_02820 | hypothetical protein |
| ? | REL606 | = 3021314 | 71 (1.320) | coding (170/933 nt) | ECB_02820 | hypothetical protein | |||||
| * | ? | REL606 | 2041245 = | 53 (0.870) | 16 (0.280) | 9/140 | 4.8 | 21.3% | coding (139/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041495 = | 69 (1.210) | coding (1326/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2041220 = | 54 (0.880) | 14 (0.240) | 9/142 | 4.8 | 13.9% | coding (164/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041465 = | 122 (2.110) | coding (1356/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2039283 = | 59 (0.960) | 10 (0.170) | 9/142 | 4.8 | 11.4% | coding (412/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | 2039547 = | 99 (1.710) | coding (148/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||