mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 125,619 | C→T | 90.9% | R21C (CGT→TGT) | U712_00560 → | DNA‑directed RNA polymerase subunit beta' |
| RA | CP006881 | 126,246 | G→A | 5.8% | V230M (GTG→ATG) | U712_00560 → | DNA‑directed RNA polymerase subunit beta' |
| RA | CP006881 | 320,990 | T→C | 7.5% | intergenic (‑283/‑28) | U712_01530 ← / → U712_01535 | putative HTH‑type transcriptional regulator yceK/Glycine betaine transport ATP‑binding protein OpuAA |
| RA | CP006881 | 421,277 | A→G | 8.2% | A392A (GCA→GCG) | U712_01915 → | Spore germination protein KA |
| RA | CP006881 | 578,474 | G→A | 9.1% | R61R (CGC→CGT) | U712_02845 ← | UPF0721 transmembrane protein ydhB |
| RA | CP006881 | 659,048 | G→T | 5.6% | intergenic (+30/‑181) | U712_03215 → / → U712_03220 | Guanine/hypoxanthine permease pbuG/Uncharacterized protein yebC |
| RA | CP006881 | 659,049 | G→T | 10.9% | intergenic (+31/‑180) | U712_03215 → / → U712_03220 | Guanine/hypoxanthine permease pbuG/Uncharacterized protein yebC |
| RA | CP006881 | 906,641 | A→G | 6.5% | A44A (GCT→GCC) | U712_04430 ← | Glutamate‑1‑semialdehyde 2,1‑aminomutase 1 |
| RA | CP006881 | 907,728 | G→T | 19.9% | G70C (GGT→TGT) | U712_04440 → | Peroxide operon regulator |
| RA | CP006881 | 924,079 | T→A | 30.5% | intergenic (‑59/‑220) | U712_04490 ← / → U712_04495 | Vegetative catalase/Aliphatic sulfonates import ATP‑binding protein SsuB |
| RA | CP006881 | 952,652 | G→T | 5.7% | intergenic (+27/‑94) | U712_04665 → / → U712_04670 | Lipoprotein yhcN/Uncharacterized protein yhcO |
| RA | CP006881 | 1,051,313 | T→A | 11.6% | I28N (ATC→AAC) | U712_05170 → | Protoporphyrinogen oxidase |
| RA | CP006881 | 1,169,789 | T→C | 6.9% | W43R (TGG→CGG) | U712_05805 → | Transcriptional activator protein med |
| RA | CP006881 | 1,169,937 | A→G | 15.4% | H92R (CAT→CGT) | U712_05805 → | Transcriptional activator protein med |
| RA | CP006881 | 1,395,470 | A→G | 6.3% | L186P (CTA→CCA) | U712_07140 ← | Sporulation kinase D |
| RA | CP006881 | 1,462,729 | G→T | 10.2% | intergenic (+26/‑198) | U712_07520 → / → U712_07525 | Molybdopterin synthase sulfur carrier subunit/putative ABC transporter ATP‑binding protein YknU |
| RA | CP006881 | 1,653,593 | G→A | 7.5% | G146D (GGC→GAC) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| JC | CP006881 | 1,663,448 | Δ9 bp | 5.5% | coding (229‑237/795 nt) | U712_08555 → | Flagellar basal‑body rod protein flgG |
| RA | CP006881 | 1,663,565 | G→A | 14.8% | G116R (GGG→AGG) | U712_08555 → | Flagellar basal‑body rod protein flgG |
| RA | CP006881 | 1,666,671 | T→A | 18.3% | L321* (TTA→TAA) | U712_08575 → | Flagellar motor switch phosphatase FliY |
| RA | CP006881 | 1,667,358 | G→A | 15.9% | W37* (TGG→TAG) | U712_08585 → | Flagellar biosynthetic protein fliZ |
| JC | CP006881 | 1,668,072 | Δ12 bp | 34.3% | coding (172‑183/666 nt) | U712_08590 → | Flagellar biosynthetic protein fliP |
| RA | CP006881 | 2,141,255 | A→G | 9.7% | I66I (ATT→ATC) | U712_10695 ← | KHG/KDPG aldolase |
| RA | CP006881 | 2,370,927 | G→T | 9.6% | intergenic (+73/+20) | U712_12015 → / ← U712_12020 | HTH‑type transcriptional regulator sinR/Spore coat‑associated protein N |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,807,644 | C→A | 5.7% | intergenic (‑225/+110) | U712_14470 ← / ← U712_14475 | Acetyl‑coenzyme A carboxylase carboxyl transferase subunit beta/putative NAD‑dependent malic enzyme 4 |
| RA | CP006881 | 2,839,753 | A→G | 5.0% | I223V (ATC→GTC) | U712_14660 → | putative inorganic polyphosphate/ATP‑NAD kinase 2 |
| RA | CP006881 | 2,909,199 | C→T | 11.2% | G49E (GGA→GAA) | U712_14990 ← | Biotin synthase |
| RA | CP006881 | 2,963,937 | G→A | 19.2% | intergenic (‑124/+156) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| RA | CP006881 | 2,963,948 | G→A | 64.1% | intergenic (‑135/+145) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| RA | CP006881 | 3,153,615 | G→C | 5.9% | S171C (TCC→TGC) | U712_16195 ← | putative xanthine dehydrogenase subunit E |
| RA | CP006881 | 3,350,137 | C→G | 11.1% | P59P (CCC→CCG) | U712_17215 → | Hypothetical Protein |
| RA | CP006881 | 3,350,164 | G→T | 5.4% | intergenic (+12/+15) | U712_17215 → / ← U712_17220 | Hypothetical Protein/Phenolic acid decarboxylase padC |
| RA | CP006881 | 3,350,165 | G→T | 9.0% | intergenic (+13/+14) | U712_17215 → / ← U712_17220 | Hypothetical Protein/Phenolic acid decarboxylase padC |
| RA | CP006881 | 3,438,133 | T→A | 5.6% | I439K (ATA→AAA) | U712_17650 → | putative MFS‑type transporter yvkA |
| RA | CP006881 | 3,438,172 | G→C | 5.4% | intergenic (+20/+28) | U712_17650 → / ← U712_17655 | putative MFS‑type transporter yvkA/Swarming motility protein swrAB |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,581,984 | C→G | 7.5% | intergenic (+18/+3) | U712_18395 → / ← U712_18400 | putative cardiolipin synthase 2/HTH‑type transcriptional activator mta |
| RA | CP006881 | 3,581,989 | A→T | 16.2% | *258K (TAA→AAA) | U712_18400 ← | HTH‑type transcriptional activator mta |
| RA | CP006881 | 3,586,470 | C→T | 15.7% | R60H (CGT→CAT) | U712_18425 ← | Urease subunit beta |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,066:1 | +A | 90.3% | intergenic (‑180/‑121) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | G→T | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | pSIJ663_pHT315_araE_xy | 2,039 | C→T | 100% | intergenic (–/‑939) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,205 | G→A | 100% | intergenic (+474/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,478 | G→A | 100% | intergenic (+747/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 245129 | 246164 | 1036 | 221 [219] | [220] 223 | U712_01140–[U712_01145] | U712_01140,[U712_01145] |
| * | * | ÷ | CP006881 | 1067397 | 1068669 | 1273 | 221 [220] | [214] 221 | [U712_05245]–U712_05250 | [U712_05245],U712_05250 |
| * | * | ÷ | CP006881 | 1148990 | 1150759 | 1770 | 222 [217] | [219] 224 | U712_05685–[U712_05690] | U712_05685,[U712_05690] |
| * | * | ÷ | CP006881 | 1503011 | 1504703 | 1693 | 222 [219] | [220] 223 | [U712_07735]–U712_07740 | [U712_07735],U712_07740 |
| * | * | ÷ | CP006881 | 1562243 | 1566690 | 4448 | 221 [220] | [218] 222 | U712_08060 | U712_08060 |
| * | * | ÷ | CP006881 | 2261212 | 2262125 | 914 | 223 [220] | [220] 225 | U712_11400–[U712_11405] | U712_11400,[U712_11405] |
| * | * | ÷ | CP006881 | 3302004–3303322 | 3304612 | 1291–2609 | 223 [216] | [0] 373 | [U712_16990]–[U712_16995] | [U712_16990],[U712_16995] |
| * | * | ÷ | CP006881 | 3725629 | 3728172 | 2544 | 222 [220] | [219] 227 | U712_19210–[U712_19215] | U712_19210,[U712_19215] |
| * | * | ÷ | CP006881 | 3757672 | 3759722 | 2051 | 223 [217] | [216] 223 | U712_19375 | U712_19375 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 3304613 = | 0 (0.000) | 227 (0.050) +50 bp |
128/178 | NT | 5.5% | intergenic (+1/+48) | U712_16995/U712_17000 | Arabinose metabolism transcriptional repressor/Uncharacterized protein yvbT |
| ? | pSIJ663_pHT315_araE_xy | 9781 = | 12343 (0.960) | intergenic (+5050/–) | ampR/– | –/– | |||||