Baym_M_2016: Manifold0-100gml-1mgml experiment stats

Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate	Flask count	Isolate count
0	1	1
1	2	54
2	3	55

ALE experiment mutation counts

Mutation Type	Unique	Observed
Single Base Substitutions	146	258
Multiple Base Substitutions	1	1
Deletions	10	68
Insertions	3	4
Mobile Element Insertions	0	0
Amplifications	77	90
Gene Conversions	0	0
Inversions	0	0
Total	237	421

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	3	57.3	3828570	94.4%	3614170	84.4
A1 F1 I2 R1	5	59.1	3845041	93.4%	3591268	82.4
A1 F1 I3 R1	24	0.0	21072	39.5%	8323	78.9
A1 F1 I5 R1	2	20.2	1215144	92.8%	1127653	83.6
A1 F1 I6 R1	4	13.9	847578	94.4%	800113	84.1
A1 F2 I10 R1	6	23.9	1417150	92.1%	1305195	82.9
A1 F2 I11 R1	4	60.0	3588558	94.0%	3373244	83.4
A1 F2 I12 R1	74	14.7	943510	90.0%	849159	81.2
A1 F2 I13 R1	9	22.1	1299734	95.2%	1237346	84.2
A1 F2 I14 R1	5	14.1	794338	96.0%	762564	85.1
A1 F2 I15 R1	7	31.6	1880952	95.1%	1788785	84.0
A1 F2 I16 R1	6	52.8	3360950	93.8%	3152571	83.1
A1 F2 I17 R1	8	17.2	1022680	94.7%	968477	83.6
A1 F2 I18 R1	3	16.6	979374	94.1%	921590	84.1
A1 F2 I19 R1	8	43.6	3005260	92.0%	2764839	81.3
A1 F2 I20 R1	6	11.0	657308	94.9%	623785	84.3
A1 F2 I21 R1	8	26.8	1599648	94.7%	1514866	85.2
A1 F2 I22 R1	5	16.3	953078	94.5%	900658	84.9
A1 F2 I23 R1	6	16.8	981532	94.4%	926566	84.5
A1 F2 I24 R1	6	18.7	1222084	92.9%	1135316	82.8
A1 F2 I25 R1	6	24.9	1467060	94.0%	1379036	84.1
A1 F2 I26 R1	3	23.0	1338740	93.4%	1250383	83.1
A1 F2 I27 R1	3	0.0	0	0.0%	0	0.0
A1 F2 I28 R1	5	21.0	1251414	94.9%	1187591	84.0
A1 F2 I29 R1	9	15.4	913984	94.7%	865542	83.9
A1 F2 I30 R1	8	21.3	1293976	94.4%	1221513	83.4
A1 F2 I31 R1	1	0.0	13922	44.5%	6195	79.9
A1 F2 I32 R1	5	53.5	3257850	94.2%	3068894	84.4
A1 F2 I33 R1	5	65.5	4329989	91.9%	3979259	81.4
A1 F2 I34 R1	5	11.5	658160	94.1%	619328	85.0
A1 F2 I35 R1	3	22.4	1324604	93.2%	1234530	82.6
A1 F2 I36 R1	7	24.1	1487292	90.8%	1350461	82.7
A1 F2 I37 R1	6	24.2	1407954	92.2%	1298133	82.7
A1 F2 I38 R1	7	11.9	669620	94.3%	631451	84.4
A1 F2 I39 R1	3	18.9	1065228	94.5%	1006640	85.1
A1 F2 I40 R1	5	13.3	752280	94.1%	707895	84.5
A1 F2 I41 R1	12	10.7	616892	95.7%	590365	85.0
A1 F2 I42 R1	7	0.0	0	0.0%	0	0.0
A1 F2 I43 R1	5	13.2	748806	94.4%	706872	84.0
A1 F2 I44 R1	6	12.9	726190	94.6%	686975	85.3
A1 F2 I45 R1	5	13.5	774870	93.9%	727602	84.4
A1 F2 I46 R1	10	13.3	780924	94.6%	738754	85.1
A1 F2 I47 R1	10	13.5	785686	94.4%	741687	84.9
A1 F2 I48 R1	4	20.8	1256080	93.1%	1169410	83.9
A1 F2 I49 R1	8	10.9	640500	94.8%	607194	84.1
A1 F2 I50 R1	5	9.1	549066	93.8%	515023	83.5
A1 F2 I51 R1	7	12.1	736542	93.8%	690876	84.1
A1 F2 I52 R1	7	111.6	6818764	95.4%	6505100	85.6
A1 F2 I53 R1	4	0.0	0	0.0%	0	0.0
A1 F2 I54 R1	14	0.0	0	0.0%	0	0.0
A1 F2 I55 R1	6	19.8	1175172	94.5%	1110537	84.2
A1 F2 I56 R1	8	14.9	871058	94.9%	826634	84.8
A1 F2 I57 R1	7	15.1	878748	95.9%	842719	84.5
A1 F2 I58 R1	8	76.0	5036090	91.0%	4582841	80.8
A1 F2 I59 R1	8	19.8	1219718	94.5%	1152633	84.5