mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 32 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 832,048 | 0 | T | G | 64.3% | 2.7 / 12.2 | 14 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 3,594,920 | 0 | A | C | 64.3% | 8.9 / 12.5 | 14 | V176G (GTG→GGG) | ftsX | permease‑like cell division protein FtsX |
| * | NZ_CP009273 | 2,216,154 | 0 | T | G | 62.5% | 6.2 / 13.1 | 16 | V164G (GTG→GGG) | dld | D‑lactate dehydrogenase |
| * | NZ_CP009273 | 381,253 | 0 | T | G | 61.5% | 3.9 / 11.9 | 13 | V189G (GTG→GGG) | tauA | taurine ABC transporter substrate‑binding protein |
| * | NZ_CP009273 | 2,290,243 | 0 | T | G | 60.0% | 9.5 / 16.0 | 15 | L87F (TTA→TTC) | ccmB | heme exporter protein CcmB |
| * | NZ_CP009273 | 2,852,805 | 0 | T | G | 60.0% | 8.4 / 13.0 | 16 | V785G (GTT→GGT) | mutS | DNA mismatch repair protein MutS |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 60.0% | ‑5.4 / 11.7 | 15 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 4,098,337 | 0 | T | G | 58.3% | 7.6 / 10.3 | 12 | G286G (GGT→GGG) | pfkA | 6‑phosphofructokinase |
| * | NZ_CP009273 | 1,508,252 | 0 | A | G | 57.1% | ‑0.8 / 14.4 | 14 | G55G (GGA→GGG) | ydcU | ABC transporter permease |
| * | NZ_CP009273 | 1,454,362 | 0 | T | G | 56.2% | 10.9 / 16.0 | 16 | V351G (GTG→GGG) | paaC | 3‑hydroxyacyl‑CoA dehydrogenase PaaC |
| * | NZ_CP009273 | 2,380,331 | 0 | T | G | 56.2% | 10.2 / 15.0 | 16 | intergenic (+21/‑82) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 434,658 | 0 | C | A | 55.6% | 2.9 / 10.6 | 9 | G326C (GGC→TGC) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NZ_CP009273 | 1,548,257 | 0 | T | G | 55.6% | 7.2 / 15.1 | 18 | Y557S (TAC→TCC) | maeA | malate dehydrogenase |
| * | NZ_CP009273 | 2,319,929 | 0 | T | G | 55.6% | 6.0 / 23.3 | 18 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NZ_CP009273 | 6,981 | 0 | A | G | 54.5% | 4.9 / 10.6 | 11 | Y327H (TAC→CAC) | yaaJ | sodium:alanine symporter family protein |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 54.5% | 8.6 / 12.6 | 11 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 2,203,946 | 0 | T | C | 54.5% | 4.3 / 10.5 | 11 | pseudogene (1368/2001 nt) | yehQ | C69 family dipeptidase |
| * | NZ_CP009273 | 2,336,778 | 0 | T | A | 54.5% | 3.0 / 12.9 | 11 | M291L (ATG→TTG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 546,710 | 0 | T | G | 53.8% | 6.8 / 13.6 | 13 | G272G (GGT→GGG) | ybcF | carbamate kinase |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 53.8% | ‑2.6 / 14.5 | 13 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3516287 = | 18 (0.870) | 3 (0.160) | 3/154 | 1.6 | 17.0% | coding (58/2553 nt) | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| ? | NZ_CP009273 | 3516322 = | 13 (0.700) | coding (93/2553 nt) | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA | |||||
| * | ? | NZ_CP009273 | = 3015939 | 23 (1.120) | 4 (0.210) | 3/154 | 1.6 | 17.1% | coding (1265/2871 nt) | xdhD | molybdopterin‑dependent oxidoreductase Mo/Fe‑S‑binding subunit |
| ? | NZ_CP009273 | = 3015996 | 18 (0.970) | coding (1322/2871 nt) | xdhD | molybdopterin‑dependent oxidoreductase Mo/Fe‑S‑binding subunit | |||||
| * | ? | NZ_CP009273 | = 348602 | 33 (1.600) | 3 (0.160) | 3/156 | 1.6 | 9.1% | coding (186/1887 nt) | prpE | propionate‑‑CoA ligase |
| ? | NZ_CP009273 | = 348608 | 30 (1.590) | coding (192/1887 nt) | prpE | propionate‑‑CoA ligase | |||||
| * | ? | NZ_CP009273 | = 303074 | 21 (1.020) | 4 (0.210) | 3/154 | 1.6 | 16.3% | coding (1970/2526 nt) | ecpC | fimbrial usher EcpC |
| ? | NZ_CP009273 | = 303087 | 22 (1.180) | coding (1957/2526 nt) | ecpC | fimbrial usher EcpC | |||||