mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 48 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM406671 | = 2143826 | 1063 (1.000) | 172 (0.170) +TTTTTTTTT |
45/266 | 17.1 | 14.2% | pseudogene (144/675 nt) | tnp1077 | pseudogene |
| ? | AM406671 | 2143827 = | 1104 (0.990) | pseudogene (143/675 nt) | tnp1077 | pseudogene | |||||
| * | ? | AM406671 | 1333548 = | NA (NA) | 117 (0.120) | 38/270 | 18.7 | 13.3% | intergenic (‑831/+481) | llmg_1358/llmg_1359 | conserved hypothetical protein/conserved hypothetical protein |
| ? | AM406671 | = 1380520 | 839 (0.760) | intergenic (‑457/+79) | llmg_1411/guaC | hypothetical protein/GMP reductase | |||||
| * | ? | AM406671 | = 1321046 | 724 (0.650) | 40 (0.040) | 34/248 | 18.8 | 5.8% | intergenic (‑192/+485) | xpt/llmg_1347 | xanthine phosphoribosyltransferase/hypothetical protein |
| ? | AM406671 | 1380521 = | 690 (0.740) | intergenic (‑458/+78) | llmg_1411/guaC | hypothetical protein/GMP reductase | |||||
| * | ? | AM406671 | = 84512 | NA (NA) | 46 (0.040) +AAAA |
32/288 | 20.8 | NA | pseudogene (177/729 nt) | tnp1077 | pseudogene |
| ? | AM406671 | 84526 = | NA (NA) | pseudogene (191/729 nt) | tnp1077 | pseudogene | |||||
| * | ? | AM406671 | = 544201 | 1032 (0.930) | 10 (0.020) +60 bp |
10/176 | 23.5 | 1.6% | coding (1760/2328 nt) | ctpE | cation‑transporting ATPase, E1‑E2 family |
| ? | AM406671 | 544262 = | 1067 (0.960) | coding (1821/2328 nt) | ctpE | cation‑transporting ATPase, E1‑E2 family | |||||
| * | ? | AM406671 | 495877 = | 124 (0.110) | 19 (0.020) +AAAAAAAAAAAAAAA |
19/266 | 23.8 | 14.6% | intergenic (+77/‑32) | llmg_0504/nifZ | putative membrane protein/pyridoxal‑phosphate dependent aminotransferase |
| ? | AM406671 | 988634 = | NA (NA) | intergenic (‑25/+49) | llmg_1021/tnp905 | putative membrane protein/pseudogene | |||||
| * | ? | AM406671 | 2481826 = | 1380 (1.240) | 21 (0.020) | 18/268 | 24.2 | 1.7% | coding (52/366 nt) | phnA | putative alkylphosphonate uptake protein |
| ? | AM406671 | = 2492410 | 1182 (1.180) | intergenic (+461/+99) | ps614/gapB | hypothetical protein predicted by Glimmer/Critica/glyceraldehyde 3‑phosphate dehydrogenase | |||||
| * | ? | AM406671 | 495877 = | 124 (0.110) | 17 (0.020) +AAAAAAAAAAAAAAAT |
17/264 | 24.5 | 3.1% | intergenic (+77/‑32) | llmg_0504/nifZ | putative membrane protein/pyridoxal‑phosphate dependent aminotransferase |
| ? | AM406671 | = 1647943 | 1061 (0.960) | intergenic (+48/+134) | tnp905/mleR | pseudogene/malolactic fermentation system transcriptional activator | |||||
| * | ? | AM406671 | 495875 = | 109 (0.100) | 18 (0.020) +ATATCACAAAAAAT |
17/268 | 24.6 | 2.8% | intergenic (+75/‑34) | llmg_0504/nifZ | putative membrane protein/pyridoxal‑phosphate dependent aminotransferase |
| ? | AM406671 | = 2450963 | 1260 (1.140) | intergenic (+48/+63) | tnp905/ywjF | transposase for insertion sequence element IS905N/Putative 3‑hydroxyisobutyrate dehydrogenase | |||||
| * | ? | AM406671 | 778852 = | 1015 (0.910) | 76 (0.120) +62 bp |
6/172 | 25.6 | 11.2% | intergenic (+11/+180) | rbsB/ps301 | ribose ABC transporter substrate binding protein RbsB/putative integrase |
| ? | AM406671 | 2063454 = | 1071 (0.970) | intergenic (‑244/+964) | sunL/ps461 | Ribosomal RNA small subunit methyltransferase B/bacteriophage lysin | |||||