mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,327,121 | 0 | C | T | 65.0% | 17.8 / 50.3 | 60 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 524,167 | 0 | A | G | 42.9% | 11.5 / 12.4 | 29 | intergenic (+34/‑782) | tyrS/PP_16SC | tyrosine‑‑tRNA ligase/16S ribosomal RNA |
| * | NC_002947 | 4,348,705 | 0 | A | G | 42.5% | 19.1 / 53.6 | 47 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 195,559 | 0 | C | A | 41.2% | 20.1 / 29.3 | 34 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,879 | 0 | G | A | 40.0% | 9.7 / 12.0 | 17 | V795V (GTG→GTA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 4,340,089 | 0 | G | C | 38.9% | 9.6 / 11.2 | 18 | intergenic (+74/‑257) | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| * | NC_002947 | 699,722 | 0 | A | G | 37.7% | 37.9 / 51.4 | 55 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 195,634 | 0 | C | T | 37.5% | 29.0 / 35.0 | 44 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 1,403,591 | 0 | T | C | 32.1% | 26.5 / 20.4 | 33 | intergenic (‑57/+24) | PP_1227/PP_1228 | membrane protein/methyl‑accepting chemotaxis transducer |
| * | NC_002947 | 197,590 | 0 | T | C | 29.7% | 49.8 / 24.2 | 40 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 1,403,590 | 0 | G | A | 27.3% | 51.5 / 14.9 | 33 | intergenic (‑56/+25) | PP_1227/PP_1228 | membrane protein/methyl‑accepting chemotaxis transducer |
| * | NC_002947 | 197,572 | 0 | G | A | 26.7% | 71.4 / 25.9 | 46 | K1026K (AAG→AAA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 2,067,783 | 0 | G | A | 20.7% | 54.2 / 10.8 | 29 | T91T (ACC→ACT) | plsC | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| Marginal new junction evidence (lowest skew 10 of 111 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 522020 = | 33 (1.140) | 6 (0.220) | 6/278 | 2.7 | 16.1% | coding (707/1428 nt) | PP_0435 | M23/M37 family peptidase |
| ? | NC_002947 | 522075 = | 31 (1.120) | coding (652/1428 nt) | PP_0435 | M23/M37 family peptidase | |||||
| * | ? | NC_002947 | 5874548 = | 36 (1.240) | 5 (0.190) | 5/268 | 2.9 | 14.4% | intergenic (‑40/+108) | PP_5148/ilvA‑II | membrane protein/threonine deaminase |
| ? | NC_002947 | 5874630 = | 26 (0.970) | intergenic (‑122/+26) | PP_5148/ilvA‑II | membrane protein/threonine deaminase | |||||
| * | ? | NC_002947 | = 5734844 | 28 (0.970) | 5 (0.180) | 5/276 | 3.0 | 16.5% | coding (820/1533 nt) | hutH | histidine ammonia‑lyase |
| ? | NC_002947 | = 5734851 | 24 (0.870) | coding (813/1533 nt) | hutH | histidine ammonia‑lyase | |||||
| * | ? | NC_002947 | = 2472115 | 16 (0.550) | 5 (0.180) | 5/276 | 3.0 | 21.6% | intergenic (+19/+130) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947 | 2472313 = | 21 (0.760) | coding (1783/1851 nt) | PP_2167 | PhoD‑like phosphatase | |||||
| * | ? | NC_002947 | = 3820884 | 24 (0.830) | 5 (0.180) | 5/282 | 3.1 | 18.4% | intergenic (+9/+34) | endA/ptxD | endonuclease I/phosphonate dehydrogenase |
| ? | NC_002947 | = 3820924 | 21 (0.750) | coding (957/963 nt) | ptxD | phosphonate dehydrogenase | |||||
| * | ? | NC_002947 | = 1967177 | 19 (0.660) | 3 (0.130) | 3/224 | 3.2 | 17.8% | intergenic (+47/+72) | PP_1762/yciK | hypothetical protein/putative oxidoreductase |
| ? | NC_002947 | = 1967207 | 13 (0.580) | intergenic (+77/+42) | PP_1762/yciK | hypothetical protein/putative oxidoreductase | |||||
| * | ? | NC_002947 | = 5759435 | 12 (0.410) | 3 (0.130) | 3/226 | 3.3 | 21.9% | intergenic (+44/+112) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
| ? | NC_002947 | = 5759463 | 12 (0.530) | intergenic (+72/+84) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB | |||||
| * | ? | NC_002947 | = 5305168 | 30 (1.040) | 4 (0.150) | 4/272 | 3.4 | 12.7% | coding (2084/3483 nt) | recC | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit |
| ? | NC_002947 | = 5305201 | 27 (0.990) | coding (2051/3483 nt) | recC | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit | |||||
| * | ? | NC_002947 | 5206022 = | 28 (0.970) | 4 (0.150) | 4/276 | 3.4 | 13.2% | coding (411/1209 nt) | PP_4586 | hypothetical protein |
| ? | NC_002947 | 5206064 = | 26 (0.940) | coding (369/1209 nt) | PP_4586 | hypothetical protein | |||||
| * | ? | NC_002947 | = 2787315 | 22 (0.760) | 4 (0.140) | 4/278 | 3.4 | 15.7% | coding (326/564 nt) | ahpC | peroxiredoxin/alkylhydroperoxide reductase small subunit |
| ? | NC_002947 | = 2787323 | 22 (0.790) | coding (334/564 nt) | ahpC | peroxiredoxin/alkylhydroperoxide reductase small subunit | |||||