mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 512,643 | 0 | A | G | 54.0% | 15.2 / 80.7 | 63 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 111,516 | 0 | C | A | 36.0% | 66.6 / 47.3 | 50 | Q196K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,512 | 0 | A | G | 33.3% | 53.1 / 46.2 | 52 | S194S (TCA→TCG) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 1,313,113 | 0 | A | T | 33.3% | 14.7 / 15.9 | 18 | intergenic (+17/+280) | rny/USA300HOU_1219 | possible hydrolase/hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 21 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2609406 | 42 (1.230) | 5 (0.160) | 5/252 | 4.2 | 11.3% | intergenic (‑236/‑199) | USA300HOU_2471/USA300HOU_2472 | hypothetical protein/hypothetical protein |
| ? | CP000730 | = 2609438 | 40 (1.280) | intergenic (‑268/‑167) | USA300HOU_2471/USA300HOU_2472 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000730 | = 2440052 | 35 (1.020) | 5 (0.160) | 5/252 | 4.2 | 12.7% | intergenic (+13/+53) | USA300HOU_2302/glvC | hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC |
| ? | CP000730 | = 2440086 | 37 (1.180) | intergenic (+47/+19) | USA300HOU_2302/glvC | hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC | |||||
| * | ? | CP000730 | = 370478 | 67 (1.960) | 4 (0.130) | 4/252 | 4.7 | 6.9% | intergenic (+26/+101) | nanE/USA300HOU_0339 | N‑acylglucosamine‑6‑phosphate 2‑epimerase/hypothetical membrane protein |
| ? | CP000730 | = 370534 | 47 (1.500) | intergenic (+82/+45) | nanE/USA300HOU_0339 | N‑acylglucosamine‑6‑phosphate 2‑epimerase/hypothetical membrane protein | |||||
| * | ? | CP000730 | 494152 = | 35 (1.020) | 4 (0.130) | 4/258 | 4.8 | 12.6% | intergenic (+101/+68) | ybbJ/yibF | GNAT family acetyltransferase/hypothetical protein |
| ? | CP000730 | 494194 = | 23 (0.720) | intergenic (+143/+26) | ybbJ/yibF | GNAT family acetyltransferase/hypothetical protein | |||||
| * | ? | CP000730 | = 234750 | 44 (1.290) | 4 (0.130) | 4/256 | 4.8 | 8.8% | intergenic (+48/+217) | USA300HOU_0211/USA300HOU_0212 | hypothetical protein/oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein |
| ? | CP000730 | = 234763 | 42 (1.320) | intergenic (+61/+204) | USA300HOU_0211/USA300HOU_0212 | hypothetical protein/oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein | |||||
| * | ? | CP000730 | = 539419 | 35 (1.020) | 5 (0.150) | 4/262 | 4.9 | 13.1% | coding (1730/3507 nt) | mfd | transcription‑repair coupling factor helicase |
| ? | CP000730 | = 539422 | 33 (1.020) | coding (1733/3507 nt) | mfd | transcription‑repair coupling factor helicase | |||||
| * | ? | CP000730 | 37410 = | 40 (1.170) | 4 (0.120) | 4/262 | 4.9 | 9.2% | intergenic (+106/‑403) | USA300HOU_0028/ugpQ1 | hypothetical protein/glycerophosphodiester phosphodiesterase |
| ? | CP000730 | 37432 = | 41 (1.260) | intergenic (+128/‑381) | USA300HOU_0028/ugpQ1 | hypothetical protein/glycerophosphodiester phosphodiesterase | |||||
| * | ? | CP000730 | = 1205323 | 43 (1.260) | 15 (0.440) | 4/276 | 5.1 | 26.6% | intergenic (+459/‑365) | yfiE/lspA | possible lactoylglutathione lyase/A8 family signal peptidase II |
| ? | CP000730 | 1205383 = | 40 (1.170) | intergenic (+519/‑305) | yfiE/lspA | possible lactoylglutathione lyase/A8 family signal peptidase II | |||||
| * | ? | CP000730 | 68659 = | 26 (0.760) | 3 (0.100) | 3/240 | 5.1 | 11.9% | coding (775/852 nt) | USA300HOU_0065 | transposase |
| ? | CP000730 | = 68655 | 22 (0.740) | coding (771/852 nt) | USA300HOU_0065 | transposase | |||||
| * | ? | CP000730 | 2494782 = | 42 (1.230) | 3 (0.100) | 3/254 | 5.3 | 6.8% | intergenic (+1/+62) | USA300HOU_2358/USA300HOU_2359 | hypothetical protein/hypothetical membrane protein |
| ? | CP000730 | 2494828 = | 43 (1.370) | intergenic (+47/+16) | USA300HOU_2358/USA300HOU_2359 | hypothetical protein/hypothetical membrane protein | |||||