mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,165,388 | A→G | I8T (ATC→ACC) | hexR ← | DNA‑binding transcriptional regulator |
| RA | 1,851,740 | G→T | G262C (GGC→TGC) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 3,256,582 | (C)8→9 | coding (615/1281 nt) | PP_2853 ← | hypothetical protein |
| RA | 3,578,651 | C→T | intergenic (+285/‑39) | PP_3158 → / → PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| RA | 4,635,632 | A→T | M57K (ATG→AAG) | uvrY ← | BarA/UvrY two‑componenent system response regulator |
| RA | 4,741,273 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,275 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,277 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,280 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,302 | A→G | intergenic (+493/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1114875 = | 28 (0.940) | 6 (0.240) | 6/230 | 2.2 | 20.7% | intergenic (‑64/+115) | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase |
| ? | NC_002947 | 1114951 = | 23 (0.940) | intergenic (‑140/+39) | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase | |||||
| * | ? | NC_002947 | = 2429960 | 25 (0.840) | 7 (0.310) | 7/214 | 1.8 | 24.5% | intergenic (+47/+66) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase |
| ? | NC_002947 | = 2429975 | 24 (1.050) | intergenic (+62/+51) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase | |||||
| * | ? | NC_002947 | 2444395 = | 21 (0.700) | 5 (0.180) | 5/264 | 2.9 | 21.4% | coding (224/234 nt) | PP_2141 | hypothetical protein |
| ? | NC_002947 | 2444416 = | 17 (0.600) | intergenic (+11/+40) | PP_2141/sulA | hypothetical protein/cell division inhibitor SulA | |||||
| * | ? | NC_002947 | = 3622266 | 25 (0.840) | 6 (0.220) | 6/256 | 2.5 | 20.4% | intergenic (‑186/+40) | PP_3192/PP_3193 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 3622288 | 24 (0.880) | intergenic (‑208/+18) | PP_3192/PP_3193 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | 4055050 = | 26 (0.870) | 7 (0.240) | 6/270 | 2.7 | 21.2% | coding (237/393 nt) | PP_3574 | hypothetical protein |
| ? | NC_002947 | 4055078 = | 27 (0.940) | coding (265/393 nt) | PP_3574 | hypothetical protein | |||||
| * | ? | NC_002947 | = 4721206 | 16 (0.540) | 6 (0.210) | 6/268 | 2.6 | 26.5% | coding (436/726 nt) | PP_4178 | dienelactone hydrolase family protein |
| ? | NC_002947 | = 4721212 | 18 (0.630) | coding (430/726 nt) | PP_4178 | dienelactone hydrolase family protein | |||||
| * | ? | NC_002947 | 4808219 = | 0 (0.000) | 9 (0.400) | 7/210 | 1.8 | 51.4% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988991 | 17 (0.760) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | = 4808224 | 0 (0.000) | 12 (0.440) | 9/256 | 1.8 | 39.3% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | 5988821 = | 37 (1.350) | intergenic (+59/‑487) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | 4896423 = | 15 (0.500) | 12 (0.470) | 8/238 | 1.8 | 39.5% | intergenic (+11/‑197) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947 | 4896512 = | 24 (0.940) | intergenic (+100/‑108) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||
| * | ? | NC_002947 | = 4896443 | 15 (0.500) | 9 (0.350) | 8/238 | 1.8 | 32.9% | intergenic (+31/‑177) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 4896490 | 24 (0.940) | intergenic (+78/‑130) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||
| * | ? | NC_002947 | = 5288471 | 19 (0.640) | 5 (0.210) | 5/220 | 2.4 | 21.8% | intergenic (‑104/+80) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B |
| ? | NC_002947 | = 5288505 | 21 (0.890) | intergenic (‑138/+46) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B | |||||
| * | ? | NC_002947 | = 5382480 | 15 (0.500) | 5 (0.220) | 5/210 | 2.3 | 27.6% | intergenic (+52/+81) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | = 5382508 | 15 (0.670) | intergenic (+80/+53) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
| * | ? | NC_002947 | = 5453186 | 9 (0.300) | 8 (0.410) +48 bp |
5/184 | 2.0 | 58.9% | intergenic (+151/‑204) | lnt/PP_4791 | apolipoprotein N‑acyltransferase/transposase |
| ? | NC_002947 | 5545674 = | 8 (0.270) | intergenic (‑766/+111) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
| * | ? | NC_002947 | 5477138 = | 40 (1.340) | 9 (0.430) | 7/198 | 1.6 | 33.2% | intergenic (+3/+109) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | 5477237 = | 8 (0.380) | intergenic (+102/+10) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||