mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 512,643 | 0 | A | G | 51.0% | 14.6 / inf | 338 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 111,512 | 0 | A | G | 26.1% | 470.9 / 196.8 | 291 | S194S (TCA→TCG) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,516 | 0 | C | A | 24.0% | 538.1 / 149.9 | 284 | Q196K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 1,435,081 | 0 | T | A | 21.6% | 346.8 / 30.9 | 149 | N146K (AAT→AAA) | dapD | 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase |
| * | CP000730 | 1,435,065 | 0 | C | G | 21.3% | 355.7 / 24.1 | 152 | A141G (GCT→GGT) | dapD | 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase |
| * | CP000730 | 1,435,069 | 0 | A | C | 21.1% | 306.9 / 17.0 | 149 | T142T (ACA→ACC) | dapD | 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 68659 = | 160 (0.930) | 8 (0.050) | 8/260 | 10.6 | 5.5% | coding (775/852 nt) | USA300HOU_0065 | transposase |
| ? | CP000730 | = 68655 | 133 (0.880) | coding (771/852 nt) | USA300HOU_0065 | transposase | |||||
| * | ? | CP000730 | 2085296 = | 182 (1.060) | 9 (0.060) | 6/268 | 12.0 | 5.5% | intergenic (‑558/‑400) | mapW2/USA300HOU_1944 | cell surface protein MapW2/hypothetical protein |
| ? | CP000730 | = 2128343 | 144 (0.930) | intergenic (+57/+1062) | int/hlgB | bacteriophage integrase/possible leukocidin subunit | |||||
| * | ? | CP000730 | 895785 = | 125 (0.730) | 13 (0.090) | 5/262 | 12.4 | 9.2% | coding (806/822 nt) | metQ | ABC superfamily ATP binding cassette transporter, binding protein |
| ? | CP000730 | = 909740 | 147 (0.970) | intergenic (‑663/‑371) | ear/USA300HOU_0868 | Ear protein/hypothetical protein | |||||
| * | ? | CP000730 | = 514456 | 163 (0.950) | 263 (1.570) | 6/288 | 12.6 | 61.6% | intergenic (+124/‑250) | rrs1/rrl1 | 16S ribosomal RNA/23S ribosomal RNA |
| ? | CP000730 | 514473 = | 169 (1.010) | intergenic (+141/‑233) | rrs1/rrl1 | 16S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | CP000730 | = 503635 | 158 (0.920) | 41 (0.260) +TTTTACTAAT |
5/276 | 12.8 | 21.6% | noncoding (90/93 nt) | USA300HOU_t0003 | tRNA‑Ser |
| ? | CP000730 | = 1996883 | 161 (0.940) | noncoding (1/76 nt) | USA300HOU_t0035 | tRNA‑Asp | |||||
| * | ? | CP000730 | 2306141 = | 204 (1.190) | 7 (0.050) | 4/262 | 13.1 | 3.6% | coding (94/108 nt) | USA300HOU_2165 | hypothetical protein |
| ? | CP000730 | 2306185 = | 195 (1.280) | coding (50/108 nt) | USA300HOU_2165 | hypothetical protein | |||||
| * | ? | CP000730 | 2543221 = | 209 (1.220) | 4 (0.030) | 4/270 | 13.4 | 2.1% | intergenic (+15/‑49) | hlgA/USA300HOU_2403 | gamma‑hemolysin component A/hypothetical protein |
| ? | CP000730 | 2543266 = | 187 (1.190) | intergenic (+60/‑4) | hlgA/USA300HOU_2403 | gamma‑hemolysin component A/hypothetical protein | |||||
| * | ? | CP000730 | 52495 = | 148 (0.860) | 181 (1.060) +T |
5/294 | 13.4 | 55.5% | intergenic (+105/‑568) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator |
| ? | CP000730 | = 52988 | 144 (0.840) | intergenic (+598/‑75) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator | |||||
| * | ? | CP000730 | = 1996883 | 161 (0.940) | 5 (0.030) +ATTAGTAAAA |
4/276 | 13.5 | 3.0% | noncoding (1/76 nt) | USA300HOU_t0035 | tRNA‑Asp |
| ? | CP000730 | 1996984 = | 185 (1.080) | noncoding (90/93 nt) | USA300HOU_t0037 | tRNA‑Ser | |||||
| * | ? | CP000730 | = 614093 | 163 (0.950) | 11 (0.070) +CGATTCAGAT |
4/276 | 13.5 | 6.2% | coding (2405/2844 nt) | sdrC | Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrC |
| ? | CP000730 | 622324 = | 192 (1.120) | coding (2887/3465 nt) | sdrE | Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrE | |||||