mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2665976 = | 71 (1.090) | 3 (0.050) | 3/238 | NT | 5.0% | coding (476/900 nt) | sdhA2 | L‑serine ammonia‑lyase alpha subunit |
| ? | CP000730 | 2666008 = | 49 (0.810) | coding (444/900 nt) | sdhA2 | L‑serine ammonia‑lyase alpha subunit | |||||
| * | ? | CP000730 | = 2588442 | 72 (1.100) | 3 (0.050) | 3/240 | NT | 4.4% | intergenic (+25/+143) | USA300HOU_2449/gltB2 | hypothetical protein/glutamate synthase (NADPH) |
| ? | CP000730 | = 2588473 | 63 (1.040) | intergenic (+56/+112) | USA300HOU_2449/gltB2 | hypothetical protein/glutamate synthase (NADPH) | |||||
| * | ? | CP000730 | 2460721 = | 74 (1.130) | 3 (0.050) | 3/250 | NT | 4.0% | coding (554/900 nt) | natA | ABC superfamily ATP binding cassette transporter, ABC protein |
| ? | CP000730 | 2460749 = | 71 (1.120) | coding (526/900 nt) | natA | ABC superfamily ATP binding cassette transporter, ABC protein | |||||
| * | ? | CP000730 | 2367584 = | 63 (0.970) | 3 (0.050) | 3/248 | NT | 4.8% | intergenic (‑701/+4857) | rpmC/pbuG | ribosomal protein L29/NCS2 family nucleobase:cation symporter‑2 |
| ? | CP000730 | 2367607 = | 59 (0.940) | intergenic (‑724/+4834) | rpmC/pbuG | ribosomal protein L29/NCS2 family nucleobase:cation symporter‑2 | |||||
| * | ? | CP000730 | 2186610 = | 71 (1.090) | 3 (0.050) | 3/240 | NT | 4.9% | coding (5/480 nt) | rsbW | anti‑sigma B factor |
| ? | CP000730 | 2186648 = | 50 (0.820) | coding (295/327 nt) | rsbV | anti‑sigma B factor antagonist | |||||
| * | ? | CP000730 | 2021630 = | 70 (1.070) | 3 (0.050) | 3/232 | NT | 4.6% | intergenic (+189/+71) | yfkA/ykhA | possible dehydrogenase/acyl‑CoA hydrolase |
| ? | CP000730 | 2021695 = | 61 (1.040) | intergenic (+254/+6) | yfkA/ykhA | possible dehydrogenase/acyl‑CoA hydrolase | |||||
| * | ? | CP000730 | 2017687 = | 67 (1.030) | 3 (0.050) | 3/248 | NT | 4.2% | coding (162/819 nt) | recX | hypothetical protein |
| ? | CP000730 | 2017716 = | 73 (1.160) | coding (133/819 nt) | recX | hypothetical protein | |||||
| * | ? | CP000730 | 1526523 = | 56 (0.860) | 2 (0.030) | 3/240 | NT | 3.8% | coding (1420/2694 nt) | dnaQ | DNA‑directed DNA polymerase III epsilon subunit |
| ? | CP000730 | 1526542 = | 48 (0.790) | coding (1401/2694 nt) | dnaQ | DNA‑directed DNA polymerase III epsilon subunit | |||||
| * | ? | CP000730 | 1368504 = | 65 (1.000) | 3 (0.050) | 3/236 | NT | 4.9% | intergenic (+2803/‑1967) | rpmG2/tkt | ribosomal protein L33/transketolase |
| ? | CP000730 | 1368533 = | 56 (0.940) | intergenic (+2832/‑1938) | rpmG2/tkt | ribosomal protein L33/transketolase | |||||
| * | ? | CP000730 | 782409 = | 60 (0.920) | 3 (0.050) | 3/246 | NT | 4.9% | intergenic (‑204/+138) | USA300HOU_0730/USA300HOU_0731 | hypothetical membrane protein/hypothetical lipoprotein |
| ? | CP000730 | 782460 = | 59 (0.950) | intergenic (‑255/+87) | USA300HOU_0730/USA300HOU_0731 | hypothetical membrane protein/hypothetical lipoprotein | |||||